Wall clock time and date at job start Wed Apr 1 2020 03:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00501 * 2 1 4 4 H 1.48503 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47276 * 59.99801 * 3 2 1 6 6 H 1.48496 * 109.47132 * 300.00094 * 3 2 1 7 7 C 1.38820 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99875 * 156.01271 * 7 2 1 9 9 N 1.36937 * 119.99784 * 336.01714 * 7 2 1 10 10 C 1.46931 * 120.62993 * 146.82137 * 9 7 2 11 11 C 1.53186 * 108.77741 * 126.36647 * 10 9 7 12 12 C 1.53036 * 109.31215 * 54.63465 * 11 10 9 13 13 C 1.53035 * 109.54058 * 298.63305 * 12 11 10 14 14 H 1.08997 * 109.50200 * 301.41583 * 13 12 11 15 15 N 1.46504 * 109.50178 * 181.31841 * 13 12 11 16 16 C 1.34777 * 120.00324 * 155.00263 * 15 13 12 17 17 O 1.21286 * 119.99578 * 359.97438 * 16 15 13 18 18 C 1.50694 * 120.00172 * 180.02562 * 16 15 13 19 19 O 1.42893 * 109.47182 * 179.97438 * 18 16 15 20 20 C 1.42903 * 114.00008 * 179.97438 * 19 18 16 21 21 C 1.50700 * 109.47338 * 180.02562 * 20 19 18 22 22 C 1.32564 * 120.00341 * 134.27283 * 21 20 19 23 23 C 1.47809 * 119.99800 * 8.38786 * 22 21 20 24 24 C 1.39536 * 120.14037 * 215.43445 * 23 22 21 25 25 C 1.37977 * 119.85657 * 179.76221 * 24 23 22 26 26 C 1.38346 * 120.14055 * 0.49151 * 25 24 23 27 27 C 1.38345 * 120.28555 * 359.76239 * 26 25 24 28 28 C 1.37968 * 120.14268 * 0.02562 * 27 26 25 29 29 C 1.46929 * 120.63325 * 326.54009 * 9 7 2 30 30 H 0.96991 * 120.00667 * 176.01108 * 1 2 3 31 31 H 1.08999 * 109.58394 * 246.15875 * 10 9 7 32 32 H 1.09003 * 109.58312 * 6.43479 * 10 9 7 33 33 H 1.08997 * 109.49847 * 174.59007 * 11 10 9 34 34 H 1.09006 * 109.49809 * 294.68537 * 11 10 9 35 35 H 1.08999 * 109.46076 * 58.65794 * 12 11 10 36 36 H 1.09010 * 109.46082 * 178.61643 * 12 11 10 37 37 H 0.97001 * 119.99390 * 335.00292 * 15 13 12 38 38 H 1.09009 * 109.47069 * 299.99909 * 18 16 15 39 39 H 1.08999 * 109.47309 * 59.99815 * 18 16 15 40 40 H 1.09006 * 109.47036 * 300.00058 * 20 19 18 41 41 H 1.09001 * 109.47135 * 59.99927 * 20 19 18 42 42 H 1.08005 * 119.99598 * 314.27341 * 21 20 19 43 43 H 1.07996 * 119.99754 * 188.38488 * 22 21 20 44 44 H 1.08002 * 120.07084 * 359.97438 * 24 23 22 45 45 H 1.07999 * 119.92842 * 180.23268 * 25 24 23 46 46 H 1.08000 * 119.85581 * 179.73613 * 26 25 24 47 47 H 1.07997 * 119.92892 * 179.97438 * 27 26 25 48 48 H 1.08006 * 120.07663 * 179.97438 * 28 27 26 49 49 H 1.08995 * 109.58509 * 353.41489 * 29 9 7 50 50 H 1.08989 * 109.58514 * 113.84646 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3461 0.0006 5 1 1.8916 2.3964 1.2125 6 1 1.8917 2.3963 -1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0202 -1.2429 -0.3797 9 7 1.4141 -2.3367 0.4831 10 6 1.7214 -3.6499 -0.1000 11 6 2.1566 -4.5979 1.0218 12 6 1.0768 -4.6287 2.1058 13 6 0.9049 -3.2277 2.6970 14 1 1.8542 -2.8886 3.1116 15 7 -0.1066 -3.2645 3.7562 16 6 -0.0880 -2.3417 4.7383 17 8 0.7666 -1.4810 4.7455 18 6 -1.1281 -2.3800 5.8281 19 8 -0.8980 -1.3076 6.7439 20 6 -1.8348 -1.2526 7.8217 21 6 -1.4995 -0.0900 8.7200 22 6 -2.4595 0.7225 9.1389 23 6 -3.8759 0.3873 8.8817 24 6 -4.7974 1.3993 8.6101 25 6 -6.1171 1.0793 8.3660 26 6 -6.5296 -0.2408 8.4001 27 6 -5.6221 -1.2484 8.6739 28 6 -4.2987 -0.9421 8.9155 29 6 0.4596 -2.2647 1.5978 30 1 -0.4851 -0.8379 -0.0584 31 1 0.8338 -4.0482 -0.5914 32 1 2.5267 -3.5472 -0.8275 33 1 2.2951 -5.6006 0.6175 34 1 3.0943 -4.2460 1.4523 35 1 0.1335 -4.9570 1.6694 36 1 1.3728 -5.3214 2.8937 37 1 -0.7898 -3.9531 3.7505 38 1 -2.1198 -2.2758 5.3877 39 1 -1.0640 -3.3302 6.3583 40 1 -2.8410 -1.1243 7.4224 41 1 -1.7861 -2.1795 8.3931 42 1 -0.4769 0.0813 9.0225 43 1 -2.2067 1.6294 9.6681 44 1 -4.4775 2.4306 8.5876 45 1 -6.8305 1.8614 8.1519 46 1 -7.5646 -0.4857 8.2125 47 1 -5.9504 -2.2770 8.6995 48 1 -3.5912 -1.7296 9.1296 49 1 0.4344 -1.2489 1.9921 50 1 -0.5329 -2.5479 1.2478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660829425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:56 Heat of formation + Delta-G solvation = -40.329854 kcal Electronic energy + Delta-G solvation = -29381.920624 eV Core-core repulsion = 25374.062400 eV Total energy + Delta-G solvation = -4007.858224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.10952 -40.37553 -39.34969 -38.46357 -36.01226 -35.61869 -34.60296 -31.99589 -31.84447 -31.35039 -30.67412 -28.78140 -27.10470 -26.81508 -23.97373 -23.72244 -23.45268 -23.22693 -21.65016 -21.04905 -20.28849 -19.40005 -18.44796 -17.96451 -17.46428 -17.32848 -16.78322 -16.61623 -16.29229 -16.11884 -15.84761 -15.68235 -15.42094 -15.34888 -15.16886 -14.70037 -14.33853 -14.29797 -14.21123 -14.06009 -13.58526 -13.55264 -13.38273 -13.23764 -13.06255 -12.62352 -12.57323 -12.48857 -11.97164 -11.96659 -11.87160 -11.86154 -11.71393 -11.66460 -11.30558 -11.13316 -10.85193 -10.54747 -10.50504 -10.20440 -9.80740 -9.22905 -8.92851 -8.28957 -5.51293 0.02426 0.48037 1.26512 1.49039 1.55860 1.60843 1.74139 1.88651 2.58504 2.88800 3.05235 3.20766 3.54147 3.71943 3.76874 3.84993 3.95523 4.02987 4.06275 4.09311 4.13800 4.19035 4.20264 4.25995 4.32432 4.33681 4.37947 4.43754 4.57521 4.59800 4.70267 4.76714 4.80299 4.98239 5.03214 5.06311 5.08932 5.10770 5.14082 5.18968 5.37000 5.39161 5.39749 5.52996 5.60247 5.63028 5.74875 5.83765 6.04657 6.09706 6.35689 6.57966 7.03939 7.27987 7.71960 8.18090 8.93665 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011290 B = 0.002349 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.544794 B =11916.691228 C =13033.038863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.071 4.071 3 Si 1.112 2.888 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.360 4.360 8 H 0.047 0.953 9 N -0.617 5.617 10 C 0.136 3.864 11 C -0.122 4.122 12 C -0.104 4.104 13 C 0.137 3.863 14 H 0.049 0.951 15 N -0.705 5.705 16 C 0.499 3.501 17 O -0.579 6.579 18 C 0.054 3.946 19 O -0.399 6.399 20 C 0.078 3.922 21 C -0.153 4.153 22 C -0.109 4.109 23 C -0.081 4.081 24 C -0.124 4.124 25 C -0.131 4.131 26 C -0.127 4.127 27 C -0.127 4.127 28 C -0.124 4.124 29 C 0.161 3.839 30 H 0.254 0.746 31 H 0.024 0.976 32 H 0.050 0.950 33 H 0.101 0.899 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.419 0.581 38 H 0.102 0.898 39 H 0.124 0.876 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.123 0.877 43 H 0.140 0.860 44 H 0.130 0.870 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.147 0.853 48 H 0.138 0.862 49 H 0.020 0.980 50 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.639 -10.345 20.430 26.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.268 4.268 3 Si 0.937 3.063 4 H -0.196 1.196 5 H -0.224 1.224 6 H -0.206 1.206 7 C -0.490 4.490 8 H 0.064 0.936 9 N -0.342 5.342 10 C 0.012 3.988 11 C -0.162 4.162 12 C -0.142 4.142 13 C 0.031 3.969 14 H 0.067 0.933 15 N -0.359 5.359 16 C 0.286 3.714 17 O -0.458 6.458 18 C -0.025 4.025 19 O -0.319 6.319 20 C 0.004 3.996 21 C -0.171 4.171 22 C -0.127 4.127 23 C -0.081 4.081 24 C -0.142 4.142 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.145 4.145 28 C -0.141 4.141 29 C 0.034 3.966 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.256 0.744 38 H 0.120 0.880 39 H 0.142 0.858 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.141 0.859 43 H 0.158 0.842 44 H 0.148 0.852 45 H 0.157 0.843 46 H 0.160 0.840 47 H 0.164 0.836 48 H 0.156 0.844 49 H 0.039 0.961 50 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -12.028 -7.966 20.440 25.018 hybrid contribution -0.144 -1.404 -0.318 1.447 sum -12.172 -9.370 20.121 25.314 Atomic orbital electron populations 1.70837 1.07546 1.29350 1.50068 1.27227 0.96742 1.05054 0.97827 0.82912 0.74532 0.72253 0.76595 1.19613 1.22443 1.20551 1.20146 0.96739 0.89624 1.42449 0.93554 1.44263 1.51785 1.03477 1.34654 1.21191 0.97752 0.85061 0.94801 1.21901 0.97899 1.00212 0.96153 1.21638 1.00497 0.93323 0.98743 1.21280 0.90871 0.97937 0.86831 0.93279 1.45746 1.33158 1.32084 1.24936 1.21190 0.86026 0.80827 0.83406 1.90754 1.40257 1.37518 1.77229 1.22287 0.96981 0.93135 0.90077 1.88008 1.54760 1.50702 1.38408 1.22177 0.91971 0.98342 0.87152 1.23103 1.00082 0.96453 0.97432 1.21853 0.90729 0.98730 1.01365 1.19322 0.93632 0.94158 1.01024 1.21530 0.93586 0.99508 0.99553 1.21418 0.95970 0.97615 0.99835 1.21586 1.00900 0.92849 0.99103 1.21434 0.92912 1.00717 0.99405 1.21686 0.96930 0.95489 1.00031 1.20905 0.91122 0.96932 0.87618 0.93578 0.95770 0.93177 0.88090 0.93336 0.90112 0.88923 0.74360 0.88046 0.85829 0.91087 0.89473 0.85877 0.84244 0.85220 0.84346 0.83991 0.83569 0.84431 0.96126 0.97157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.99 12.68 21.65 0.27 -60.72 16 2 C -0.07 -4.38 4.68 84.86 0.40 -3.98 16 3 Si 1.11 56.24 29.98 68.60 2.06 58.29 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 6 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.36 -21.62 9.43 84.04 0.79 -20.82 16 8 H 0.05 2.79 7.94 -2.91 -0.02 2.77 16 9 N -0.62 -32.63 2.78 -699.92 -1.94 -34.57 16 10 C 0.14 5.66 6.52 86.36 0.56 6.22 16 11 C -0.12 -3.82 6.08 30.67 0.19 -3.63 16 12 C -0.10 -2.93 5.36 30.62 0.16 -2.76 16 13 C 0.14 5.28 2.59 44.92 0.12 5.40 16 14 H 0.05 2.27 7.58 -2.39 -0.02 2.25 16 15 N -0.70 -21.42 5.08 -442.84 -2.25 -23.67 16 16 C 0.50 17.74 7.87 87.66 0.69 18.43 16 17 O -0.58 -28.77 16.16 15.99 0.26 -28.51 16 18 C 0.05 1.30 6.42 71.23 0.46 1.76 16 19 O -0.40 -12.03 9.86 -129.94 -1.28 -13.31 16 20 C 0.08 1.62 4.55 71.24 0.32 1.94 16 21 C -0.15 -3.22 9.83 24.53 0.24 -2.97 16 22 C -0.11 -2.07 9.80 23.65 0.23 -1.84 16 23 C -0.08 -1.54 5.16 -20.12 -0.10 -1.65 16 24 C -0.12 -2.25 9.79 22.52 0.22 -2.03 16 25 C -0.13 -2.06 10.03 22.23 0.22 -1.84 16 26 C -0.13 -1.78 10.04 22.32 0.22 -1.56 16 27 C -0.13 -1.75 10.03 22.23 0.22 -1.53 16 28 C -0.12 -1.98 7.40 22.52 0.17 -1.81 16 29 C 0.16 8.11 4.30 86.22 0.37 8.48 16 30 H 0.25 16.68 6.80 -92.71 -0.63 16.05 16 31 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 2.10 7.93 -2.39 -0.02 2.09 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.42 8.34 8.60 -92.71 -0.80 7.54 16 38 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 1.42 5.22 -2.38 -0.01 1.41 16 41 H 0.09 1.24 7.62 -2.39 -0.02 1.22 16 42 H 0.12 2.60 8.06 -2.91 -0.02 2.57 16 43 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 44 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 45 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 46 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 47 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 48 H 0.14 1.74 5.93 -2.91 -0.02 1.72 16 49 H 0.02 1.25 6.70 -2.39 -0.02 1.23 16 50 H 0.01 0.53 7.84 -2.39 -0.02 0.51 16 Total: -1.00 -88.59 405.26 2.88 -85.71 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.27 Total: 20.94 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 5.49 Total: -4.17 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -3.92 Total: -118.96 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -1.02 Total: -41.82 kcal Atomic # 14 Polarization: 56.24 SS G_CDS: 2.06 Total: 58.29 kcal Total: -88.59 2.88 -85.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660829425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.383 kcal (2) G-P(sol) polarization free energy of solvation -88.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds