Wall clock time and date at job start Wed Apr 1 2020 03:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 C 1.50697 * 109.47491 * 179.97438 * 11 10 9 13 13 C 1.38237 * 119.99934 * 269.72981 * 12 11 10 14 14 C 1.38235 * 119.99947 * 179.76211 * 13 12 11 15 15 C 1.38233 * 120.00063 * 0.50577 * 14 13 12 16 16 C 1.50702 * 120.00207 * 179.72075 * 15 14 13 17 17 N 1.46492 * 109.47265 * 270.02325 * 16 15 14 18 18 C 1.34783 * 120.00115 * 179.97438 * 17 16 15 19 19 O 1.21281 * 119.99680 * 359.97438 * 18 17 16 20 20 C 1.50695 * 120.00413 * 179.97438 * 18 17 16 21 21 H 1.09005 * 110.66535 * 56.78136 * 20 18 17 22 22 C 1.55004 * 110.74781 * 293.37036 * 20 18 17 23 23 C 1.55817 * 102.78671 * 241.67417 * 22 20 18 24 24 H 1.09000 * 115.39171 * 158.83199 * 23 22 20 25 25 C 1.55818 * 105.32869 * 287.30817 * 23 22 20 26 26 C 1.55012 * 102.78703 * 72.68977 * 25 23 22 27 27 C 1.55815 * 110.74961 * 179.97438 * 20 18 17 28 28 H 1.08993 * 115.38846 * 319.48743 * 27 20 18 29 29 O 1.46533 * 101.24604 * 32.41768 * 23 22 20 30 30 C 1.38234 * 119.99883 * 359.74711 * 15 14 13 31 31 C 1.38231 * 120.00088 * 359.97438 * 30 15 14 32 32 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 34 34 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 35 35 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 36 36 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 37 37 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 38 38 H 1.08002 * 119.99812 * 359.97438 * 13 12 11 39 39 H 1.08005 * 119.99882 * 180.22514 * 14 13 12 40 40 H 1.09006 * 109.46921 * 30.02421 * 16 15 14 41 41 H 1.08996 * 109.46923 * 150.01763 * 16 15 14 42 42 H 0.96995 * 120.00459 * 359.97438 * 17 16 15 43 43 H 1.09005 * 110.75169 * 359.97438 * 22 20 18 44 44 H 1.08994 * 110.75332 * 123.35106 * 22 20 18 45 45 H 1.08998 * 110.74735 * 314.36792 * 25 23 22 46 46 H 1.08995 * 110.75300 * 191.01193 * 25 23 22 47 47 H 1.09003 * 110.74548 * 241.67543 * 26 25 23 48 48 H 1.09000 * 110.74644 * 118.32434 * 26 25 23 49 49 H 1.08008 * 120.00070 * 179.97438 * 30 15 14 50 50 H 1.08004 * 119.99945 * 179.97438 * 31 30 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 6 1.8170 -6.1248 0.0190 13 6 2.1578 -6.7319 -1.1753 14 6 2.8531 -7.9266 -1.1696 15 6 3.1986 -8.5195 0.0304 16 6 3.9512 -9.8252 0.0367 17 7 2.9985 -10.9380 0.0419 18 6 3.4468 -12.2090 0.0474 19 8 4.6391 -12.4314 0.0476 20 6 2.4668 -13.3538 0.0534 21 1 1.7916 -13.2866 -0.7997 22 6 1.6739 -13.3908 1.3847 23 6 2.0689 -14.7743 1.9830 24 1 1.9276 -14.8757 3.0590 25 6 1.3252 -15.8285 1.1092 26 6 2.1182 -15.7914 -0.2222 27 6 3.2147 -14.7207 0.0585 28 1 4.0951 -14.7741 -0.5818 29 8 3.4428 -14.9155 1.4935 30 6 2.8533 -7.9151 1.2247 31 6 2.1630 -6.7175 1.2189 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3880 0.0005 34 1 2.6849 -3.7190 -0.8822 35 1 2.6842 -3.7101 0.8977 36 1 0.4367 -4.7574 0.9022 37 1 0.4373 -4.7664 -0.8777 38 1 1.8837 -6.2711 -2.1128 39 1 3.1225 -8.3991 -2.1027 40 1 4.5779 -9.8876 -0.8530 41 1 4.5778 -9.8791 0.9269 42 1 2.0450 -10.7601 0.0413 43 1 1.9879 -12.5815 2.0440 44 1 0.6013 -13.3435 1.1968 45 1 0.2878 -15.5347 0.9491 46 1 1.3818 -16.8170 1.5649 47 1 1.4758 -15.4791 -1.0457 48 1 2.5698 -16.7615 -0.4298 49 1 3.1229 -8.3785 2.1623 50 1 1.8929 -6.2454 2.1521 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662813509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:02 Heat of formation + Delta-G solvation = -65.502265 kcal Electronic energy + Delta-G solvation = -28467.756443 eV Core-core repulsion = 24458.806661 eV Total energy + Delta-G solvation = -4008.949782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.10263 -40.68601 -39.81596 -37.21564 -36.02896 -34.36164 -33.44618 -32.61305 -31.85516 -31.76786 -30.62030 -29.75257 -27.05514 -25.33229 -24.04789 -23.64786 -23.10727 -22.56467 -21.63404 -21.54064 -20.79801 -19.23406 -18.62863 -17.65765 -17.37219 -16.88077 -16.79908 -16.52085 -16.24060 -16.06408 -15.78426 -15.45404 -15.39856 -15.12290 -15.03175 -14.96202 -14.29749 -14.27377 -13.75637 -13.68517 -13.53992 -13.51143 -12.96653 -12.90399 -12.76392 -12.56600 -12.54266 -12.43644 -12.37081 -12.10871 -12.04679 -12.02902 -11.87664 -11.81339 -11.69434 -11.48342 -10.97280 -10.94862 -10.78864 -10.15272 -9.83227 -9.55788 -9.03779 -7.97954 -5.27585 0.25182 0.49392 1.46865 1.47497 1.57940 1.60023 2.16976 2.54213 2.83116 2.92899 3.35811 3.42157 3.56717 3.61457 3.73603 3.81378 3.86469 3.93686 4.01788 4.13395 4.13476 4.16698 4.27123 4.37070 4.39862 4.44808 4.47866 4.48630 4.55924 4.60734 4.70022 4.74361 4.77283 4.87838 4.99055 5.02387 5.05693 5.10153 5.11081 5.15650 5.23921 5.24497 5.26312 5.36049 5.44933 5.49123 5.60931 5.65931 5.77551 6.05728 6.24809 6.51855 7.21720 7.30960 8.05219 8.29718 9.25639 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.034209 B = 0.001449 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.309652 B =19316.489010 C =19575.372576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.161 3.839 11 C -0.079 4.079 12 C -0.070 4.070 13 C -0.124 4.124 14 C -0.095 4.095 15 C -0.114 4.114 16 C 0.169 3.831 17 N -0.713 5.713 18 C 0.518 3.482 19 O -0.582 6.582 20 C -0.135 4.135 21 H 0.140 0.860 22 C -0.132 4.132 23 C 0.048 3.952 24 H 0.140 0.860 25 C -0.143 4.143 26 C -0.144 4.144 27 C 0.075 3.925 28 H 0.118 0.882 29 O -0.405 6.405 30 C -0.097 4.097 31 C -0.125 4.125 32 H 0.253 0.747 33 H 0.375 0.625 34 H 0.017 0.983 35 H 0.016 0.984 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.128 0.872 39 H 0.140 0.860 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.414 0.586 43 H 0.068 0.932 44 H 0.119 0.881 45 H 0.101 0.899 46 H 0.074 0.926 47 H 0.100 0.900 48 H 0.075 0.925 49 H 0.137 0.863 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 -35.490 0.056 35.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.382 4.382 8 H 0.091 0.909 9 N -0.390 5.390 10 C 0.035 3.965 11 C -0.117 4.117 12 C -0.071 4.071 13 C -0.142 4.142 14 C -0.114 4.114 15 C -0.115 4.115 16 C 0.046 3.954 17 N -0.365 5.365 18 C 0.306 3.694 19 O -0.461 6.461 20 C -0.156 4.156 21 H 0.158 0.842 22 C -0.170 4.170 23 C -0.009 4.009 24 H 0.158 0.842 25 C -0.181 4.181 26 C -0.181 4.181 27 C 0.017 3.983 28 H 0.136 0.864 29 O -0.325 6.325 30 C -0.115 4.115 31 C -0.143 4.143 32 H 0.061 0.939 33 H 0.207 0.793 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.146 0.854 39 H 0.158 0.842 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.251 0.749 43 H 0.087 0.913 44 H 0.137 0.863 45 H 0.120 0.880 46 H 0.092 0.908 47 H 0.118 0.882 48 H 0.093 0.907 49 H 0.155 0.845 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.993 -35.591 0.180 35.606 hybrid contribution -0.285 1.558 -0.022 1.584 sum 0.708 -34.034 0.158 34.041 Atomic orbital electron populations 1.69820 1.06577 1.26144 1.59314 1.25584 0.96463 1.01124 1.03419 0.85056 0.78152 0.79604 0.76836 1.19195 1.21768 1.21799 1.19674 0.91503 0.85436 1.41568 0.90851 1.42591 1.05722 1.01191 1.89499 1.20701 0.93835 0.84522 0.97462 1.20635 0.97170 0.90774 1.03075 1.19904 0.97861 0.95228 0.94122 1.21222 0.99220 0.95986 0.97796 1.21192 0.97066 0.94936 0.98168 1.19758 1.01384 0.96730 0.93579 1.20031 0.90681 0.82104 1.02560 1.46012 1.11026 1.04597 1.74845 1.20967 0.89366 0.84469 0.74583 1.90706 1.19001 1.85306 1.51126 1.23149 0.97228 0.92724 1.02515 0.84202 1.23302 1.01794 0.98096 0.93822 1.24981 0.80902 0.94694 1.00317 0.84230 1.23278 1.00317 0.99639 0.94857 1.23272 0.96890 0.98977 0.98991 1.24579 0.97799 0.92665 0.83224 0.86434 1.90128 1.28461 1.92875 1.21009 1.21177 0.97211 0.94886 0.98228 1.21207 0.99279 0.96022 0.97755 0.93865 0.79270 0.96476 0.96557 0.90934 0.90860 0.85389 0.84211 0.91003 0.91495 0.74948 0.91290 0.86313 0.88048 0.90751 0.88187 0.90663 0.84515 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.30 13.06 21.65 0.28 -59.02 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.75 -38.63 5.60 -343.46 -1.92 -40.55 16 10 C 0.16 6.55 6.24 86.38 0.54 7.09 16 11 C -0.08 -2.49 5.46 29.85 0.16 -2.32 16 12 C -0.07 -1.82 5.13 -19.87 -0.10 -1.92 16 13 C -0.12 -2.82 9.70 22.27 0.22 -2.61 16 14 C -0.10 -1.77 9.70 22.27 0.22 -1.56 16 15 C -0.11 -2.03 5.25 -19.87 -0.10 -2.14 16 16 C 0.17 2.90 5.80 85.64 0.50 3.40 16 17 N -0.71 -10.10 5.55 -466.80 -2.59 -12.69 16 18 C 0.52 9.43 6.98 87.65 0.61 10.05 16 19 O -0.58 -16.33 15.92 -3.03 -0.05 -16.38 16 20 C -0.13 -1.49 2.89 -9.88 -0.03 -1.51 16 21 H 0.14 0.66 7.81 -2.38 -0.02 0.64 16 22 C -0.13 -1.07 6.16 32.25 0.20 -0.87 16 23 C 0.05 0.52 5.71 32.54 0.19 0.70 16 24 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 25 C -0.14 -0.92 6.52 32.26 0.21 -0.71 16 26 C -0.14 -1.13 6.52 32.25 0.21 -0.92 16 27 C 0.08 1.11 4.59 32.54 0.15 1.26 16 28 H 0.12 2.08 7.80 -2.39 -0.02 2.06 16 29 O -0.41 -8.16 11.65 -148.98 -1.74 -9.89 16 30 C -0.10 -1.84 9.70 22.27 0.22 -1.62 16 31 C -0.12 -2.87 9.70 22.27 0.22 -2.66 16 32 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.38 20.32 7.67 -92.71 -0.71 19.61 16 34 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 2.27 8.09 -2.38 -0.02 2.25 16 37 H 0.07 2.29 8.08 -2.39 -0.02 2.27 16 38 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 39 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.07 1.31 8.09 -2.38 -0.02 1.29 16 41 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 42 H 0.41 3.89 8.46 -92.71 -0.78 3.11 16 43 H 0.07 0.73 7.76 -2.38 -0.02 0.71 16 44 H 0.12 0.23 7.80 -2.39 -0.02 0.21 16 45 H 0.10 0.20 7.80 -2.39 -0.02 0.18 16 46 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.10 0.35 7.81 -2.39 -0.02 0.33 16 48 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 50 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -75.93 408.54 0.16 -75.76 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -0.55 Total: 27.97 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 4.70 Total: -13.55 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -4.23 Total: -112.26 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -1.78 Total: -26.27 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -75.93 0.16 -75.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662813509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.262 kcal (2) G-P(sol) polarization free energy of solvation -75.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds