Wall clock time and date at job start Wed Apr 1 2020 03:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48499 * 109.47232 * 270.00373 * 3 2 1 5 5 H 1.48502 * 109.46914 * 29.99751 * 3 2 1 6 6 H 1.48503 * 109.47628 * 149.99845 * 3 2 1 7 7 C 1.38812 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99959 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99735 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.64978 * 359.95602 * 9 7 2 11 11 C 1.54322 * 107.26923 * 181.09888 * 10 9 7 12 12 C 1.55153 * 102.94746 * 22.18845 * 11 10 9 13 13 H 1.09005 * 111.03240 * 82.58544 * 12 11 10 14 14 C 1.52997 * 111.00847 * 206.42573 * 12 11 10 15 15 N 1.46505 * 109.47212 * 178.65005 * 14 12 11 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99622 * 179.97438 * 16 15 14 19 19 C 1.50699 * 109.82352 * 84.43567 * 18 16 15 20 20 C 1.38236 * 119.99797 * 90.42569 * 19 18 16 21 21 C 1.38238 * 119.99780 * 179.76671 * 20 19 18 22 22 C 1.38233 * 119.99942 * 0.50697 * 21 20 19 23 23 C 1.38230 * 120.00182 * 359.74797 * 22 21 20 24 24 C 1.38233 * 120.00062 * 270.69938 * 19 18 16 25 25 C 1.54383 * 109.83157 * 205.41350 * 18 16 15 26 26 C 1.55311 * 102.25076 * 98.15766 * 25 18 16 27 27 C 1.54953 * 100.94083 * 34.13550 * 26 25 18 28 28 O 1.43236 * 109.83378 * 323.54895 * 18 16 15 29 29 C 1.47422 * 125.64445 * 179.97438 * 9 7 2 30 30 H 0.96996 * 120.00485 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.87972 * 300.51254 * 10 9 7 32 32 H 1.09002 * 109.88210 * 61.52354 * 10 9 7 33 33 H 1.09002 * 110.71590 * 263.82976 * 11 10 9 34 34 H 1.08994 * 110.71955 * 140.55764 * 11 10 9 35 35 H 1.09002 * 109.47153 * 58.64997 * 14 12 11 36 36 H 1.09001 * 109.46832 * 298.65188 * 14 12 11 37 37 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 38 38 H 1.08000 * 120.00657 * 0.02562 * 20 19 18 39 39 H 1.08001 * 119.99924 * 180.22910 * 21 20 19 40 40 H 1.08004 * 119.99837 * 179.72152 * 22 21 20 41 41 H 1.08008 * 120.00328 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.00165 * 0.02562 * 24 19 18 43 43 H 1.08997 * 110.85140 * 216.34839 * 25 18 16 44 44 H 1.08996 * 110.84774 * 339.97100 * 25 18 16 45 45 H 1.08997 * 111.12465 * 276.21375 * 26 25 18 46 46 H 1.09004 * 111.12086 * 152.05227 * 26 25 18 47 47 H 1.08998 * 110.30523 * 204.64163 * 27 26 25 48 48 H 1.08997 * 110.39172 * 82.51233 * 27 26 25 49 49 H 1.08999 * 110.36968 * 36.99622 * 29 9 7 50 50 H 1.09000 * 110.46132 * 274.71559 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5328 0.0009 11 6 -0.4483 -4.0442 0.0290 12 6 0.8522 -4.6557 0.6138 13 1 0.8578 -4.5954 1.7022 14 6 1.0373 -6.1007 0.1465 15 7 2.2887 -6.6336 0.6909 16 6 2.6611 -7.8981 0.4102 17 8 1.9607 -8.5946 -0.2934 18 6 3.9487 -8.4460 0.9697 19 6 3.7183 -8.9689 2.3642 20 6 3.3569 -10.2893 2.5563 21 6 3.1503 -10.7702 3.8357 22 6 3.2948 -9.9281 4.9224 23 6 3.6509 -8.6064 4.7299 24 6 3.8627 -8.1268 3.4508 25 6 4.4730 -9.5802 0.0631 26 6 5.5309 -8.8458 -0.8051 27 6 6.0811 -7.8143 0.2120 28 8 4.9445 -7.4168 0.9951 29 6 1.9336 -3.7310 0.0005 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5573 -2.0515 0.8842 32 1 -0.5547 -2.0828 -0.8999 33 1 -0.6316 -4.4189 -0.9780 34 1 -1.2981 -4.2510 0.6793 35 1 1.0739 -6.1285 -0.9426 36 1 0.2014 -6.7059 0.4975 37 1 2.8486 -6.0766 1.2540 38 1 3.2402 -10.9464 1.7071 39 1 2.8716 -11.8028 3.9861 40 1 3.1289 -10.3027 5.9217 41 1 3.7634 -7.9482 5.5789 42 1 4.1403 -7.0939 3.3004 43 1 4.9373 -10.3680 0.6564 44 1 3.6725 -9.9817 -0.5582 45 1 5.0645 -8.3486 -1.6555 46 1 6.3134 -9.5301 -1.1330 47 1 6.5000 -6.9544 -0.3106 48 1 6.8369 -8.2745 0.8484 49 1 2.8336 -3.7401 0.6154 50 1 2.1673 -4.0435 -1.0172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663634790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:15 Heat of formation + Delta-G solvation = -30.193205 kcal Electronic energy + Delta-G solvation = -30733.015627 eV Core-core repulsion = 26725.596961 eV Total energy + Delta-G solvation = -4007.418666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.16121 -38.98142 -38.45601 -37.52196 -34.70359 -32.80205 -32.63687 -32.04983 -30.99911 -29.82276 -28.68050 -28.00615 -25.61619 -24.27871 -23.41425 -23.08763 -21.87907 -21.57431 -20.31135 -19.88886 -19.52352 -18.04379 -17.53451 -16.76036 -16.32974 -16.04732 -15.63052 -15.37311 -15.04065 -14.97047 -14.60612 -14.33223 -14.15041 -13.81967 -13.69415 -13.50044 -13.42004 -12.96038 -12.81491 -12.32350 -12.26607 -12.12394 -11.96815 -11.75183 -11.56478 -11.48966 -11.35650 -11.18248 -11.08709 -10.87888 -10.78169 -10.66521 -10.30580 -10.10916 -9.94797 -9.83976 -9.63612 -9.57043 -9.12223 -8.95506 -8.88371 -8.57999 -6.80811 -5.69202 -3.02512 1.03418 1.19712 2.56382 3.17958 3.30150 3.41146 3.45955 3.47979 3.59946 4.16967 4.30301 4.50933 4.58143 4.71051 4.75161 4.81033 4.86829 4.91674 5.06012 5.14473 5.25940 5.27870 5.35159 5.39192 5.44814 5.47082 5.47695 5.56504 5.68650 5.70381 5.72144 5.80472 5.83857 5.92853 6.06754 6.09212 6.22821 6.25161 6.30192 6.37150 6.47181 6.53907 6.56342 6.61960 6.73016 6.75392 6.94672 7.58189 7.59358 7.65386 7.84873 8.21629 8.28349 9.24364 9.84826 10.51177 11.42617 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.002635 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.934951 B =10621.717164 C =10841.745042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.117 4.117 13 H 0.079 0.921 14 C 0.131 3.869 15 N -0.706 5.706 16 C 0.522 3.478 17 O -0.540 6.540 18 C 0.136 3.864 19 C -0.095 4.095 20 C -0.103 4.103 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.089 4.089 25 C -0.139 4.139 26 C -0.157 4.157 27 C 0.051 3.949 28 O -0.360 6.360 29 C 0.143 3.857 30 H 0.252 0.748 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.407 0.593 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.065 0.935 49 H 0.036 0.964 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.618 -23.139 5.792 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.007 3.993 15 N -0.356 5.356 16 C 0.306 3.694 17 O -0.418 6.418 18 C 0.093 3.907 19 C -0.096 4.096 20 C -0.121 4.121 21 C -0.142 4.142 22 C -0.133 4.133 23 C -0.140 4.140 24 C -0.107 4.107 25 C -0.176 4.176 26 C -0.194 4.194 27 C -0.026 4.026 28 O -0.279 6.279 29 C 0.017 3.983 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.242 0.758 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.148 0.852 43 H 0.106 0.894 44 H 0.123 0.877 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.110 0.890 48 H 0.083 0.917 49 H 0.054 0.946 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 9.029 -23.166 5.396 25.442 hybrid contribution 0.714 1.067 0.207 1.300 sum 9.743 -22.099 5.603 24.793 Atomic orbital electron populations 1.69962 1.04873 1.24978 1.57185 1.24801 0.95721 0.97656 1.02353 0.86123 0.78576 0.83540 0.77551 1.21646 1.21698 1.20698 1.19061 0.90421 0.82449 1.43646 0.90489 1.44480 1.01726 0.99874 1.87158 1.21147 0.84342 0.88148 1.01107 1.22854 0.95429 0.99415 0.99635 1.22613 0.98624 0.91964 1.00526 0.90244 1.21443 0.85107 0.93919 0.98792 1.45986 1.24385 1.13382 1.51895 1.20287 0.86684 0.82158 0.80252 1.90680 1.54512 1.58480 1.38157 1.20906 0.87957 0.88869 0.92983 1.19709 1.02223 0.94311 0.93323 1.21045 0.98785 0.94693 0.97589 1.21109 1.00724 0.99916 0.92410 1.21219 0.99216 0.93978 0.98923 1.21197 0.99875 0.95834 0.97090 1.21049 0.97716 1.00128 0.91808 1.23215 0.99896 0.96791 0.97721 1.23304 0.98809 0.98448 0.98882 1.23476 0.88461 0.98533 0.92083 1.88437 1.27444 1.40157 1.71871 1.21549 0.93977 0.86055 0.96710 0.93788 0.93586 0.93893 0.92233 0.91995 0.91334 0.91681 0.75763 0.85609 0.85868 0.86020 0.85718 0.85200 0.89412 0.87695 0.89956 0.89380 0.88975 0.91714 0.94564 0.96381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.32 10.31 55.49 0.57 -26.75 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.40 10.28 -15.06 -0.15 -6.55 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.61 -15.60 3.39 -170.05 -0.58 -16.18 16 10 C 0.18 4.34 5.38 -3.06 -0.02 4.32 16 11 C -0.13 -2.50 6.42 -24.90 -0.16 -2.66 16 12 C -0.12 -2.02 3.11 -88.46 -0.27 -2.30 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 14 C 0.13 2.00 5.12 -4.04 -0.02 1.98 16 15 N -0.71 -10.08 5.32 -60.29 -0.32 -10.40 16 16 C 0.52 7.54 6.73 -10.99 -0.07 7.47 16 17 O -0.54 -9.16 15.56 5.56 0.09 -9.08 16 18 C 0.14 1.58 0.98 -92.20 -0.09 1.49 16 19 C -0.09 -1.07 4.80 -104.63 -0.50 -1.57 16 20 C -0.10 -1.04 8.75 -39.58 -0.35 -1.39 16 21 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 22 C -0.12 -1.01 10.05 -39.59 -0.40 -1.40 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.09 -0.97 9.36 -39.58 -0.37 -1.34 16 25 C -0.14 -1.33 4.99 -24.78 -0.12 -1.46 16 26 C -0.16 -1.30 7.16 -24.47 -0.18 -1.48 16 27 C 0.05 0.45 7.78 38.19 0.30 0.74 16 28 O -0.36 -4.14 9.11 -35.23 -0.32 -4.46 16 29 C 0.14 2.95 6.41 -2.52 -0.02 2.94 16 30 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 32 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 33 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.41 5.51 7.84 -40.82 -0.32 5.19 16 38 H 0.13 1.13 6.85 -52.49 -0.36 0.77 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.13 1.39 7.54 -52.49 -0.40 0.99 16 43 H 0.09 0.70 6.89 -51.93 -0.36 0.34 16 44 H 0.10 1.13 6.76 -51.93 -0.35 0.78 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 LS Contribution 397.80 15.07 5.99 5.99 Total: -1.00 -32.90 397.80 -10.91 -43.81 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -8.01 Total: 4.44 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -3.32 Total: -4.61 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.33 Total: -53.32 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.23 Total: -13.54 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.90 -10.91 -43.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663634790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.621 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds