Wall clock time and date at job start Wed Apr 1 2020 03:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48499 * 109.47232 * 270.00373 * 3 2 1 5 5 H 1.48502 * 109.46914 * 29.99751 * 3 2 1 6 6 H 1.48503 * 109.47628 * 149.99845 * 3 2 1 7 7 C 1.38812 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99959 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99735 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.64978 * 359.95602 * 9 7 2 11 11 C 1.54322 * 107.26923 * 181.09888 * 10 9 7 12 12 C 1.55153 * 102.94746 * 22.18845 * 11 10 9 13 13 H 1.09005 * 111.03240 * 82.58544 * 12 11 10 14 14 C 1.52997 * 111.00847 * 206.42573 * 12 11 10 15 15 N 1.46505 * 109.47212 * 178.65005 * 14 12 11 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99622 * 179.97438 * 16 15 14 19 19 C 1.50699 * 109.82352 * 84.43567 * 18 16 15 20 20 C 1.38236 * 119.99797 * 90.42569 * 19 18 16 21 21 C 1.38238 * 119.99780 * 179.76671 * 20 19 18 22 22 C 1.38233 * 119.99942 * 0.50697 * 21 20 19 23 23 C 1.38230 * 120.00182 * 359.74797 * 22 21 20 24 24 C 1.38233 * 120.00062 * 270.69938 * 19 18 16 25 25 C 1.54383 * 109.83157 * 205.41350 * 18 16 15 26 26 C 1.55311 * 102.25076 * 98.15766 * 25 18 16 27 27 C 1.54953 * 100.94083 * 34.13550 * 26 25 18 28 28 O 1.43236 * 109.83378 * 323.54895 * 18 16 15 29 29 C 1.47422 * 125.64445 * 179.97438 * 9 7 2 30 30 H 0.96996 * 120.00485 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.87972 * 300.51254 * 10 9 7 32 32 H 1.09002 * 109.88210 * 61.52354 * 10 9 7 33 33 H 1.09002 * 110.71590 * 263.82976 * 11 10 9 34 34 H 1.08994 * 110.71955 * 140.55764 * 11 10 9 35 35 H 1.09002 * 109.47153 * 58.64997 * 14 12 11 36 36 H 1.09001 * 109.46832 * 298.65188 * 14 12 11 37 37 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 38 38 H 1.08000 * 120.00657 * 0.02562 * 20 19 18 39 39 H 1.08001 * 119.99924 * 180.22910 * 21 20 19 40 40 H 1.08004 * 119.99837 * 179.72152 * 22 21 20 41 41 H 1.08008 * 120.00328 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.00165 * 0.02562 * 24 19 18 43 43 H 1.08997 * 110.85140 * 216.34839 * 25 18 16 44 44 H 1.08996 * 110.84774 * 339.97100 * 25 18 16 45 45 H 1.08997 * 111.12465 * 276.21375 * 26 25 18 46 46 H 1.09004 * 111.12086 * 152.05227 * 26 25 18 47 47 H 1.08998 * 110.30523 * 204.64163 * 27 26 25 48 48 H 1.08997 * 110.39172 * 82.51233 * 27 26 25 49 49 H 1.08999 * 110.36968 * 36.99622 * 29 9 7 50 50 H 1.09000 * 110.46132 * 274.71559 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5328 0.0009 11 6 -0.4483 -4.0442 0.0290 12 6 0.8522 -4.6557 0.6138 13 1 0.8578 -4.5954 1.7022 14 6 1.0373 -6.1007 0.1465 15 7 2.2887 -6.6336 0.6909 16 6 2.6611 -7.8981 0.4102 17 8 1.9607 -8.5946 -0.2934 18 6 3.9487 -8.4460 0.9697 19 6 3.7183 -8.9689 2.3642 20 6 3.3569 -10.2893 2.5563 21 6 3.1503 -10.7702 3.8357 22 6 3.2948 -9.9281 4.9224 23 6 3.6509 -8.6064 4.7299 24 6 3.8627 -8.1268 3.4508 25 6 4.4730 -9.5802 0.0631 26 6 5.5309 -8.8458 -0.8051 27 6 6.0811 -7.8143 0.2120 28 8 4.9445 -7.4168 0.9951 29 6 1.9336 -3.7310 0.0005 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5573 -2.0515 0.8842 32 1 -0.5547 -2.0828 -0.8999 33 1 -0.6316 -4.4189 -0.9780 34 1 -1.2981 -4.2510 0.6793 35 1 1.0739 -6.1285 -0.9426 36 1 0.2014 -6.7059 0.4975 37 1 2.8486 -6.0766 1.2540 38 1 3.2402 -10.9464 1.7071 39 1 2.8716 -11.8028 3.9861 40 1 3.1289 -10.3027 5.9217 41 1 3.7634 -7.9482 5.5789 42 1 4.1403 -7.0939 3.3004 43 1 4.9373 -10.3680 0.6564 44 1 3.6725 -9.9817 -0.5582 45 1 5.0645 -8.3486 -1.6555 46 1 6.3134 -9.5301 -1.1330 47 1 6.5000 -6.9544 -0.3106 48 1 6.8369 -8.2745 0.8484 49 1 2.8336 -3.7401 0.6154 50 1 2.1673 -4.0435 -1.0172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663634790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:13 Heat of formation + Delta-G solvation = -49.825915 kcal Electronic energy + Delta-G solvation = -30733.866966 eV Core-core repulsion = 26725.596961 eV Total energy + Delta-G solvation = -4008.270004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.05768 -40.03909 -39.36893 -38.99832 -36.13608 -34.36125 -33.59119 -32.95385 -31.70147 -31.60942 -30.04575 -29.12015 -27.33789 -25.66279 -24.50583 -23.83158 -22.88840 -22.28625 -21.93949 -21.43039 -20.69391 -19.15816 -18.66874 -18.29039 -17.42812 -16.89508 -16.76946 -16.57332 -16.47110 -16.06775 -15.68346 -15.65018 -15.35739 -14.98679 -14.68001 -14.59752 -14.35497 -14.13218 -13.95143 -13.82536 -13.63110 -13.41722 -13.05677 -13.01474 -12.79735 -12.76988 -12.64796 -12.32508 -12.24132 -12.02578 -11.93830 -11.90814 -11.86194 -11.80097 -11.56411 -11.49463 -11.41250 -10.71070 -10.51338 -10.13092 -9.83295 -9.70205 -8.90525 -7.85176 -5.20921 0.29940 0.48484 1.45457 1.47177 1.47567 1.56271 2.11269 2.49286 2.51812 2.85146 3.32837 3.42735 3.54052 3.57913 3.65279 3.84184 3.99325 3.99734 4.02604 4.07657 4.11418 4.17333 4.27080 4.34754 4.41376 4.59200 4.59859 4.66310 4.67048 4.70865 4.76112 4.78601 4.86674 4.88965 4.96409 5.01648 5.04202 5.05333 5.12369 5.15529 5.31669 5.41969 5.44920 5.52621 5.54147 5.60965 5.66640 5.76953 5.83420 6.06776 6.19693 6.46659 7.09061 7.10157 7.77418 8.42101 9.25373 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.002635 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.934951 B =10621.717164 C =10841.745042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.243 4.243 8 H 0.082 0.918 9 N -0.628 5.628 10 C 0.184 3.816 11 C -0.121 4.121 12 C -0.096 4.096 13 H 0.086 0.914 14 C 0.143 3.857 15 N -0.706 5.706 16 C 0.518 3.482 17 O -0.569 6.569 18 C 0.140 3.860 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.130 4.130 24 C -0.105 4.105 25 C -0.137 4.137 26 C -0.152 4.152 27 C 0.044 3.956 28 O -0.376 6.376 29 C 0.141 3.859 30 H 0.247 0.753 31 H 0.013 0.987 32 H 0.005 0.995 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.411 0.589 38 H 0.133 0.867 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.124 0.876 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.115 0.885 47 H 0.097 0.903 48 H 0.081 0.919 49 H 0.044 0.956 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.036 -25.055 6.881 28.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.372 4.372 8 H 0.100 0.900 9 N -0.354 5.354 10 C 0.058 3.942 11 C -0.160 4.160 12 C -0.115 4.115 13 H 0.104 0.896 14 C 0.019 3.981 15 N -0.356 5.356 16 C 0.304 3.696 17 O -0.449 6.449 18 C 0.097 3.903 19 C -0.111 4.111 20 C -0.132 4.132 21 C -0.143 4.143 22 C -0.134 4.134 23 C -0.148 4.148 24 C -0.123 4.123 25 C -0.174 4.174 26 C -0.189 4.189 27 C -0.032 4.032 28 O -0.295 6.295 29 C 0.016 3.984 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.024 0.976 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.247 0.753 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.142 0.858 43 H 0.124 0.876 44 H 0.109 0.891 45 H 0.086 0.914 46 H 0.133 0.867 47 H 0.115 0.885 48 H 0.099 0.901 49 H 0.062 0.938 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 10.482 -25.108 6.490 27.972 hybrid contribution 0.297 1.632 -0.122 1.663 sum 10.779 -23.476 6.368 26.606 Atomic orbital electron populations 1.70188 1.06318 1.25261 1.58316 1.25670 0.96641 1.01078 1.02640 0.85071 0.77729 0.79056 0.77437 1.21408 1.22030 1.19172 1.19470 0.91015 0.83755 1.42954 0.89991 1.44802 1.02512 1.01139 1.86996 1.20921 0.83773 0.91716 0.97744 1.22720 0.96986 0.95047 1.01256 1.22411 0.96245 0.92345 1.00545 0.89574 1.21222 0.86093 0.92502 0.98313 1.45965 1.24071 1.13659 1.51855 1.20861 0.87480 0.81687 0.79569 1.90658 1.55719 1.59098 1.39410 1.20830 0.86606 0.89150 0.93681 1.19756 1.03378 0.94975 0.92952 1.21237 0.98911 0.94457 0.98575 1.21444 0.99817 1.01159 0.91898 1.21564 0.98131 0.93571 1.00170 1.21455 0.99605 0.96680 0.97032 1.21125 0.98623 1.00007 0.92524 1.23228 0.99845 0.96724 0.97617 1.23305 0.99038 0.98559 0.98017 1.23683 0.88056 0.99095 0.92361 1.88416 1.28098 1.40652 1.72349 1.21683 0.95171 0.84520 0.96990 0.94420 0.96873 0.97638 0.90977 0.89536 0.92066 0.90708 0.75319 0.84944 0.83500 0.83565 0.84265 0.85817 0.87565 0.89057 0.91378 0.86680 0.88484 0.90072 0.93808 0.96514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.18 10.31 21.65 0.22 -57.95 16 2 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 3 Si 0.98 46.28 29.55 68.60 2.03 48.31 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.24 -13.85 10.28 84.03 0.86 -12.98 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.63 -32.84 3.39 -691.93 -2.35 -35.19 16 10 C 0.18 9.23 5.38 86.73 0.47 9.69 16 11 C -0.12 -4.43 6.42 31.78 0.20 -4.22 16 12 C -0.10 -3.19 3.11 -9.39 -0.03 -3.22 16 13 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 14 C 0.14 4.17 5.12 86.38 0.44 4.61 16 15 N -0.71 -19.54 5.32 -463.06 -2.46 -22.00 16 16 C 0.52 14.68 6.73 87.66 0.59 15.27 16 17 O -0.57 -19.09 15.56 -3.03 -0.05 -19.13 16 18 C 0.14 3.14 0.98 -11.82 -0.01 3.13 16 19 C -0.11 -2.34 4.80 -19.87 -0.10 -2.44 16 20 C -0.11 -2.11 8.75 22.27 0.19 -1.91 16 21 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 22 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 23 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 24 C -0.10 -2.17 9.36 22.27 0.21 -1.96 16 25 C -0.14 -2.46 4.99 31.86 0.16 -2.30 16 26 C -0.15 -2.29 7.16 32.06 0.23 -2.06 16 27 C 0.04 0.71 7.78 72.65 0.57 1.27 16 28 O -0.38 -8.33 9.11 -148.98 -1.36 -9.68 16 29 C 0.14 5.78 6.41 86.87 0.56 6.34 16 30 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.01 0.73 7.38 -2.39 -0.02 0.71 16 32 H 0.01 0.31 7.50 -2.39 -0.02 0.29 16 33 H 0.07 2.46 8.04 -2.39 -0.02 2.45 16 34 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.41 10.81 7.84 -92.71 -0.73 10.08 16 38 H 0.13 2.18 6.85 -2.91 -0.02 2.16 16 39 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 41 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.12 2.61 7.54 -2.91 -0.02 2.59 16 43 H 0.11 1.49 6.89 -2.39 -0.02 1.47 16 44 H 0.09 1.92 6.76 -2.39 -0.02 1.90 16 45 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.02 0.71 8.00 -2.39 -0.02 0.69 16 Total: -1.00 -72.66 397.80 1.72 -70.94 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.21 Total: 24.16 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 5.48 Total: 0.56 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -4.59 Total: -115.15 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -1.40 Total: -28.82 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -72.66 1.72 -70.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663634790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.111 kcal (2) G-P(sol) polarization free energy of solvation -72.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds