Wall clock time and date at job start Wed Apr 1 2020 02:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99760 * 2 1 4 4 H 1.48500 * 109.47227 * 240.00033 * 3 2 1 5 5 H 1.48507 * 109.47431 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47335 * 119.99829 * 3 2 1 7 7 C 1.38810 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99791 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00225 * 359.97438 * 7 2 1 10 10 C 1.47028 * 125.64518 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.26785 * 178.99496 * 10 9 7 12 12 C 1.55160 * 102.94056 * 337.80196 * 11 10 9 13 13 H 1.09002 * 111.00122 * 277.38774 * 12 11 10 14 14 C 1.53002 * 111.00146 * 153.58265 * 12 11 10 15 15 C 1.52999 * 109.47008 * 178.18253 * 14 12 11 16 16 N 1.46500 * 109.46936 * 179.97438 * 15 14 12 17 17 C 1.34776 * 119.99868 * 179.72068 * 16 15 14 18 18 O 1.21282 * 119.99980 * 355.24349 * 17 16 15 19 19 C 1.50702 * 120.00052 * 175.24377 * 17 16 15 20 20 H 1.09004 * 109.33705 * 231.64638 * 19 17 16 21 21 O 1.42723 * 109.33820 * 351.32698 * 19 17 16 22 22 C 1.43219 * 113.11480 * 172.01230 * 21 19 17 23 23 C 1.52976 * 108.47299 * 289.27657 * 22 21 19 24 24 C 1.50747 * 109.76656 * 49.16322 * 23 22 21 25 25 C 1.38591 * 118.76629 * 163.22307 * 24 23 22 26 26 C 1.38072 * 120.27845 * 179.84998 * 25 24 23 27 27 C 1.38259 * 119.86127 * 359.96409 * 26 25 24 28 28 C 1.38048 * 119.89541 * 0.07473 * 27 26 25 29 29 C 1.37904 * 121.35178 * 343.15672 * 24 23 22 30 30 C 1.47462 * 125.63158 * 179.97438 * 9 7 2 31 31 H 0.97001 * 120.00161 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.88314 * 59.57405 * 10 9 7 33 33 H 1.08998 * 109.87785 * 298.40466 * 10 9 7 34 34 H 1.09001 * 110.71563 * 219.44223 * 11 10 9 35 35 H 1.08997 * 110.72016 * 96.16871 * 11 10 9 36 36 H 1.09001 * 109.47124 * 58.17646 * 14 12 11 37 37 H 1.09007 * 109.46984 * 298.17594 * 14 12 11 38 38 H 1.08993 * 109.47323 * 59.99177 * 15 14 12 39 39 H 1.09007 * 109.46710 * 299.99509 * 15 14 12 40 40 H 0.97001 * 120.00266 * 359.97438 * 16 15 14 41 41 H 1.09001 * 109.63570 * 48.96797 * 22 21 19 42 42 H 1.08995 * 109.63771 * 169.58159 * 22 21 19 43 43 H 1.08998 * 109.41970 * 169.24963 * 23 22 21 44 44 H 1.08993 * 109.42282 * 289.07214 * 23 22 21 45 45 H 1.08006 * 119.86428 * 359.82972 * 25 24 23 46 46 H 1.08002 * 120.07025 * 179.97438 * 26 25 24 47 47 H 1.08001 * 120.05077 * 180.02562 * 27 26 25 48 48 H 1.08005 * 119.84686 * 180.02562 * 28 27 26 49 49 H 1.08997 * 110.34716 * 85.23209 * 30 9 7 50 50 H 1.09005 * 110.40730 * 322.90093 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1375 -2.5328 0.0028 11 6 -0.4484 -4.0442 -0.0221 12 6 0.8516 -4.6567 -0.6072 13 1 0.8554 -4.5986 -1.6957 14 6 1.0370 -6.1010 -0.1375 15 6 2.3023 -6.6844 -0.7696 16 7 2.4801 -8.0671 -0.3193 17 6 3.5325 -8.7876 -0.7549 18 8 4.2840 -8.3221 -1.5853 19 6 3.7755 -10.1715 -0.2102 20 1 4.8062 -10.2471 0.1365 21 8 2.8902 -10.4112 0.8833 22 6 2.9236 -11.7658 1.3473 23 6 2.2647 -12.6560 0.2920 24 6 2.8405 -12.3476 -1.0666 25 6 2.6512 -13.2588 -2.0936 26 6 3.1624 -13.0065 -3.3512 27 6 3.8654 -11.8396 -3.5871 28 6 4.0550 -10.9318 -2.5644 29 6 3.5437 -11.1848 -1.3008 30 6 1.9341 -3.7313 0.0017 31 1 -0.4850 0.8400 0.0004 32 1 -0.5582 -2.0531 -0.8809 33 1 -0.5536 -2.0836 0.9046 34 1 -1.2989 -4.2522 -0.6714 35 1 -0.6308 -4.4170 0.9857 36 1 0.1736 -6.6945 -0.4381 37 1 1.1311 -6.1206 0.9484 38 1 3.1655 -6.0908 -0.4690 39 1 2.2081 -6.6648 -1.8554 40 1 1.8384 -8.4653 0.2895 41 1 3.9578 -12.0769 1.4950 42 1 2.3764 -11.8448 2.2866 43 1 2.4488 -13.7026 0.5346 44 1 1.1907 -12.4708 0.2810 45 1 2.1018 -14.1703 -1.9095 46 1 3.0132 -13.7190 -4.1489 47 1 4.2662 -11.6389 -4.5697 48 1 4.6040 -10.0203 -2.7497 49 1 2.1687 -4.0410 1.0201 50 1 2.8327 -3.7415 -0.6152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664731120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:09 Heat of formation + Delta-G solvation = -37.950405 kcal Electronic energy + Delta-G solvation = -29613.973843 eV Core-core repulsion = 25606.218799 eV Total energy + Delta-G solvation = -4007.755044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.14336 -39.28592 -37.96801 -37.74651 -35.23921 -33.53258 -32.92364 -32.13893 -30.85893 -29.87024 -28.92657 -27.13852 -26.07647 -24.62332 -24.24444 -22.90597 -22.18297 -20.98692 -20.36795 -19.94099 -19.41564 -17.81323 -17.62014 -16.90157 -16.65050 -15.99137 -15.77675 -15.62622 -15.37346 -14.95314 -14.62390 -14.54828 -14.29851 -13.99578 -13.72937 -13.64561 -13.45275 -13.02081 -12.89097 -12.41898 -12.34798 -12.22452 -12.15564 -11.89422 -11.78089 -11.61803 -11.48930 -11.12231 -11.03625 -10.83115 -10.70823 -10.23370 -10.15194 -10.11621 -9.92956 -9.79749 -9.71244 -9.56446 -9.10349 -9.06915 -8.97172 -8.53724 -6.75823 -5.64906 -2.97879 0.89493 1.03756 2.38812 3.00427 3.13987 3.41704 3.44953 3.48746 3.50171 4.17691 4.18900 4.37110 4.55340 4.58099 4.66296 4.73410 4.82401 4.88755 4.98615 5.00880 5.07675 5.16071 5.28978 5.32191 5.36768 5.40957 5.53629 5.61404 5.66023 5.72112 5.74576 5.81183 5.92123 6.07532 6.07963 6.13445 6.18006 6.21714 6.26817 6.39677 6.44686 6.49117 6.61075 6.64243 6.65632 6.79455 7.03776 7.43095 7.62569 7.70237 7.88940 8.05955 8.33159 9.29085 9.89633 10.56366 11.46870 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021704 B = 0.001903 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.766559 B =14706.609427 C =15035.400266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.100 4.100 13 H 0.075 0.925 14 C -0.116 4.116 15 C 0.115 3.885 16 N -0.710 5.710 17 C 0.531 3.469 18 O -0.534 6.534 19 C 0.118 3.882 20 H 0.105 0.895 21 O -0.369 6.369 22 C 0.061 3.939 23 C -0.117 4.117 24 C -0.067 4.067 25 C -0.124 4.124 26 C -0.111 4.111 27 C -0.124 4.124 28 C -0.101 4.101 29 C -0.118 4.118 30 C 0.140 3.860 31 H 0.252 0.748 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.408 0.592 41 H 0.060 0.940 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.146 0.854 49 H 0.018 0.982 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 -31.609 -0.481 31.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.334 5.334 10 C 0.052 3.948 11 C -0.177 4.177 12 C -0.120 4.120 13 H 0.094 0.906 14 C -0.154 4.154 15 C -0.008 4.008 16 N -0.361 5.361 17 C 0.316 3.684 18 O -0.412 6.412 19 C 0.057 3.943 20 H 0.122 0.878 21 O -0.288 6.288 22 C -0.015 4.015 23 C -0.154 4.154 24 C -0.068 4.068 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.142 4.142 28 C -0.118 4.118 29 C -0.119 4.119 30 C 0.013 3.987 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.244 0.756 41 H 0.078 0.922 42 H 0.125 0.875 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.163 0.837 49 H 0.035 0.965 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.929 -30.844 -0.969 31.108 hybrid contribution 0.243 0.417 0.108 0.494 sum 4.173 -30.427 -0.861 30.724 Atomic orbital electron populations 1.69964 1.04858 1.25014 1.57322 1.24804 0.95734 0.97649 1.02478 0.86197 0.78426 0.83243 0.77892 1.21192 1.21648 1.21216 1.19031 0.90417 0.82529 1.43490 0.90551 1.44499 1.01757 0.99959 1.87140 1.21132 0.84341 0.88389 1.00893 1.22902 0.95945 0.99468 0.99366 1.22267 0.97641 0.91963 1.00143 0.90637 1.21738 0.96118 0.96627 1.00900 1.21561 0.99193 0.80424 0.99617 1.46032 1.26967 1.14289 1.48829 1.19857 0.81292 0.85646 0.81647 1.90714 1.47349 1.70556 1.32551 1.21046 0.95644 0.91693 0.85961 0.87796 1.88011 1.63541 1.28839 1.48429 1.22694 1.00899 0.81018 0.96919 1.21169 1.01434 1.00890 0.91923 1.19445 0.97624 0.93809 0.95886 1.21020 1.01006 0.99346 0.92875 1.21193 0.97508 0.97324 0.96870 1.21170 0.99425 0.94263 0.99308 1.21574 0.98342 1.00144 0.91773 1.19691 1.01282 0.95539 0.95347 1.21618 0.94315 0.86092 0.96631 0.93801 0.93729 0.94120 0.92369 0.92554 0.91665 0.91191 0.90813 0.91322 0.75593 0.92167 0.87529 0.89427 0.89334 0.85870 0.85872 0.85689 0.83677 0.96475 0.94475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.78 10.31 55.49 0.57 -27.21 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.51 10.28 -15.06 -0.15 -6.66 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.61 -16.00 3.40 -170.05 -0.58 -16.58 16 10 C 0.18 4.40 5.37 -3.06 -0.02 4.39 16 11 C -0.14 -2.58 6.42 -24.89 -0.16 -2.74 16 12 C -0.10 -1.72 3.03 -88.48 -0.27 -1.99 16 13 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 14 C -0.12 -1.51 4.84 -26.73 -0.13 -1.64 16 15 C 0.11 1.53 5.56 -4.04 -0.02 1.51 16 16 N -0.71 -8.44 5.47 -60.29 -0.33 -8.77 16 17 C 0.53 6.80 6.88 -10.98 -0.08 6.73 16 18 O -0.53 -8.41 14.77 5.56 0.08 -8.33 16 19 C 0.12 1.19 3.22 -29.05 -0.09 1.09 16 20 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 21 O -0.37 -3.24 9.20 -35.23 -0.32 -3.57 16 22 C 0.06 0.36 6.85 37.15 0.25 0.61 16 23 C -0.12 -0.67 6.00 -27.87 -0.17 -0.84 16 24 C -0.07 -0.57 5.78 -104.59 -0.60 -1.17 16 25 C -0.12 -0.95 9.67 -39.51 -0.38 -1.33 16 26 C -0.11 -0.87 10.05 -39.63 -0.40 -1.27 16 27 C -0.12 -1.12 10.05 -39.64 -0.40 -1.52 16 28 C -0.10 -1.08 9.06 -39.50 -0.36 -1.44 16 29 C -0.12 -1.19 5.46 -104.62 -0.57 -1.76 16 30 C 0.14 2.94 6.04 -2.52 -0.02 2.92 16 31 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16 33 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 38 H 0.07 1.09 7.59 -51.93 -0.39 0.69 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.41 4.14 7.34 -40.82 -0.30 3.84 16 41 H 0.06 0.31 8.07 -51.93 -0.42 -0.11 16 42 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 46 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 47 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 48 H 0.15 1.76 5.83 -52.48 -0.31 1.45 16 49 H 0.02 0.36 7.96 -51.93 -0.41 -0.05 16 50 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 395.37 15.07 5.96 5.96 Total: -1.00 -33.70 395.37 -11.36 -45.05 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -8.06 Total: 1.34 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -3.66 Total: -5.53 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.34 Total: -52.55 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.24 Total: -11.90 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.70 -11.36 -45.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664731120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.102 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds