Wall clock time and date at job start Wed Apr 1 2020 02:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99760 * 2 1 4 4 H 1.48500 * 109.47227 * 240.00033 * 3 2 1 5 5 H 1.48507 * 109.47431 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47335 * 119.99829 * 3 2 1 7 7 C 1.38810 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99791 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00225 * 359.97438 * 7 2 1 10 10 C 1.47028 * 125.64518 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.26785 * 178.99496 * 10 9 7 12 12 C 1.55160 * 102.94056 * 337.80196 * 11 10 9 13 13 H 1.09002 * 111.00122 * 277.38774 * 12 11 10 14 14 C 1.53002 * 111.00146 * 153.58265 * 12 11 10 15 15 C 1.52999 * 109.47008 * 178.18253 * 14 12 11 16 16 N 1.46500 * 109.46936 * 179.97438 * 15 14 12 17 17 C 1.34776 * 119.99868 * 179.72068 * 16 15 14 18 18 O 1.21282 * 119.99980 * 355.24349 * 17 16 15 19 19 C 1.50702 * 120.00052 * 175.24377 * 17 16 15 20 20 H 1.09004 * 109.33705 * 231.64638 * 19 17 16 21 21 O 1.42723 * 109.33820 * 351.32698 * 19 17 16 22 22 C 1.43219 * 113.11480 * 172.01230 * 21 19 17 23 23 C 1.52976 * 108.47299 * 289.27657 * 22 21 19 24 24 C 1.50747 * 109.76656 * 49.16322 * 23 22 21 25 25 C 1.38591 * 118.76629 * 163.22307 * 24 23 22 26 26 C 1.38072 * 120.27845 * 179.84998 * 25 24 23 27 27 C 1.38259 * 119.86127 * 359.96409 * 26 25 24 28 28 C 1.38048 * 119.89541 * 0.07473 * 27 26 25 29 29 C 1.37904 * 121.35178 * 343.15672 * 24 23 22 30 30 C 1.47462 * 125.63158 * 179.97438 * 9 7 2 31 31 H 0.97001 * 120.00161 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.88314 * 59.57405 * 10 9 7 33 33 H 1.08998 * 109.87785 * 298.40466 * 10 9 7 34 34 H 1.09001 * 110.71563 * 219.44223 * 11 10 9 35 35 H 1.08997 * 110.72016 * 96.16871 * 11 10 9 36 36 H 1.09001 * 109.47124 * 58.17646 * 14 12 11 37 37 H 1.09007 * 109.46984 * 298.17594 * 14 12 11 38 38 H 1.08993 * 109.47323 * 59.99177 * 15 14 12 39 39 H 1.09007 * 109.46710 * 299.99509 * 15 14 12 40 40 H 0.97001 * 120.00266 * 359.97438 * 16 15 14 41 41 H 1.09001 * 109.63570 * 48.96797 * 22 21 19 42 42 H 1.08995 * 109.63771 * 169.58159 * 22 21 19 43 43 H 1.08998 * 109.41970 * 169.24963 * 23 22 21 44 44 H 1.08993 * 109.42282 * 289.07214 * 23 22 21 45 45 H 1.08006 * 119.86428 * 359.82972 * 25 24 23 46 46 H 1.08002 * 120.07025 * 179.97438 * 26 25 24 47 47 H 1.08001 * 120.05077 * 180.02562 * 27 26 25 48 48 H 1.08005 * 119.84686 * 180.02562 * 28 27 26 49 49 H 1.08997 * 110.34716 * 85.23209 * 30 9 7 50 50 H 1.09005 * 110.40730 * 322.90093 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1375 -2.5328 0.0028 11 6 -0.4484 -4.0442 -0.0221 12 6 0.8516 -4.6567 -0.6072 13 1 0.8554 -4.5986 -1.6957 14 6 1.0370 -6.1010 -0.1375 15 6 2.3023 -6.6844 -0.7696 16 7 2.4801 -8.0671 -0.3193 17 6 3.5325 -8.7876 -0.7549 18 8 4.2840 -8.3221 -1.5853 19 6 3.7755 -10.1715 -0.2102 20 1 4.8062 -10.2471 0.1365 21 8 2.8902 -10.4112 0.8833 22 6 2.9236 -11.7658 1.3473 23 6 2.2647 -12.6560 0.2920 24 6 2.8405 -12.3476 -1.0666 25 6 2.6512 -13.2588 -2.0936 26 6 3.1624 -13.0065 -3.3512 27 6 3.8654 -11.8396 -3.5871 28 6 4.0550 -10.9318 -2.5644 29 6 3.5437 -11.1848 -1.3008 30 6 1.9341 -3.7313 0.0017 31 1 -0.4850 0.8400 0.0004 32 1 -0.5582 -2.0531 -0.8809 33 1 -0.5536 -2.0836 0.9046 34 1 -1.2989 -4.2522 -0.6714 35 1 -0.6308 -4.4170 0.9857 36 1 0.1736 -6.6945 -0.4381 37 1 1.1311 -6.1206 0.9484 38 1 3.1655 -6.0908 -0.4690 39 1 2.2081 -6.6648 -1.8554 40 1 1.8384 -8.4653 0.2895 41 1 3.9578 -12.0769 1.4950 42 1 2.3764 -11.8448 2.2866 43 1 2.4488 -13.7026 0.5346 44 1 1.1907 -12.4708 0.2810 45 1 2.1018 -14.1703 -1.9095 46 1 3.0132 -13.7190 -4.1489 47 1 4.2662 -11.6389 -4.5697 48 1 4.6040 -10.0203 -2.7497 49 1 2.1687 -4.0410 1.0201 50 1 2.8327 -3.7415 -0.6152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664731120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:08 Heat of formation + Delta-G solvation = -58.799017 kcal Electronic energy + Delta-G solvation = -29614.877906 eV Core-core repulsion = 25606.218799 eV Total energy + Delta-G solvation = -4008.659107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.87769 -40.20701 -39.36718 -38.58131 -36.51315 -34.75059 -34.06442 -32.83389 -32.43920 -30.84976 -30.35756 -28.38366 -27.28499 -26.31842 -24.83576 -23.85154 -23.27025 -21.96745 -21.76746 -21.10891 -20.75188 -18.87042 -18.64644 -18.27960 -17.56444 -16.96113 -16.61846 -16.55531 -16.50689 -16.29695 -15.95276 -15.58229 -15.33995 -15.28451 -14.69493 -14.60314 -14.28969 -14.08238 -13.86670 -13.72349 -13.60783 -13.48138 -13.32158 -13.06467 -12.90246 -12.79415 -12.75286 -12.65263 -12.28368 -12.19195 -12.05087 -11.79840 -11.64310 -11.53869 -11.39480 -11.33239 -10.99140 -10.78367 -10.70051 -10.11220 -9.77113 -9.60707 -8.88839 -7.85145 -5.20514 0.24774 0.39411 1.41726 1.43764 1.47674 1.53894 2.09458 2.47304 2.49351 2.77747 3.32201 3.47797 3.62558 3.67486 3.78372 3.85172 3.89984 3.97255 4.07723 4.15596 4.18163 4.24483 4.33359 4.34890 4.36783 4.54611 4.59792 4.61136 4.68321 4.71928 4.76086 4.86334 4.90419 4.96663 4.99607 5.04524 5.11893 5.16255 5.17668 5.24543 5.39814 5.44286 5.46409 5.52278 5.54265 5.57588 5.71023 5.79295 5.85155 6.02584 6.20958 6.50000 7.11002 7.11711 7.79059 8.43564 9.25028 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021704 B = 0.001903 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.766559 B =14706.609427 C =15035.400266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.980 3.020 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.632 5.632 10 C 0.181 3.819 11 C -0.122 4.122 12 C -0.085 4.085 13 H 0.071 0.929 14 C -0.098 4.098 15 C 0.121 3.879 16 N -0.701 5.701 17 C 0.525 3.475 18 O -0.571 6.571 19 C 0.128 3.872 20 H 0.107 0.893 21 O -0.378 6.378 22 C 0.053 3.947 23 C -0.114 4.114 24 C -0.073 4.073 25 C -0.125 4.125 26 C -0.112 4.112 27 C -0.137 4.137 28 C -0.125 4.125 29 C -0.134 4.134 30 C 0.133 3.867 31 H 0.247 0.753 32 H 0.007 0.993 33 H 0.004 0.996 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.419 0.581 41 H 0.066 0.934 42 H 0.131 0.869 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.152 0.848 46 H 0.148 0.852 47 H 0.133 0.867 48 H 0.121 0.879 49 H 0.025 0.975 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 -34.820 0.342 34.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.358 5.358 10 C 0.056 3.944 11 C -0.161 4.161 12 C -0.105 4.105 13 H 0.090 0.910 14 C -0.136 4.136 15 C -0.003 4.003 16 N -0.352 5.352 17 C 0.311 3.689 18 O -0.451 6.451 19 C 0.067 3.933 20 H 0.124 0.876 21 O -0.297 6.297 22 C -0.022 4.022 23 C -0.150 4.150 24 C -0.073 4.073 25 C -0.143 4.143 26 C -0.130 4.130 27 C -0.155 4.155 28 C -0.143 4.143 29 C -0.135 4.135 30 C 0.009 3.991 31 H 0.056 0.944 32 H 0.025 0.975 33 H 0.023 0.977 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.257 0.743 41 H 0.084 0.916 42 H 0.149 0.851 43 H 0.131 0.869 44 H 0.113 0.887 45 H 0.170 0.830 46 H 0.166 0.834 47 H 0.151 0.849 48 H 0.139 0.861 49 H 0.043 0.957 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.346 -34.105 -0.123 34.269 hybrid contribution 0.449 1.350 -0.151 1.430 sum 3.795 -32.755 -0.274 32.975 Atomic orbital electron populations 1.70195 1.06251 1.25306 1.58327 1.25687 0.96711 1.01103 1.02717 0.85135 0.77146 0.78723 0.78232 1.20381 1.21819 1.20240 1.19433 0.90936 0.84026 1.43011 0.90342 1.44857 1.02702 1.01241 1.87005 1.20942 0.83571 0.92464 0.97396 1.22768 0.97343 0.94580 1.01363 1.22140 0.95033 0.93629 0.99675 0.91029 1.21575 0.96893 0.93791 1.01365 1.21357 0.98693 0.81140 0.99090 1.45909 1.27065 1.13567 1.48699 1.20389 0.80780 0.86674 0.81054 1.90695 1.48580 1.71700 1.34170 1.20795 0.96036 0.89920 0.86583 0.87559 1.87984 1.63131 1.30854 1.47723 1.22997 1.01870 0.79507 0.97849 1.21242 1.01419 1.02261 0.90127 1.19816 0.96785 0.93064 0.97604 1.21417 1.00448 1.00033 0.92403 1.21529 0.96531 0.96996 0.97945 1.21363 0.99997 0.94739 0.99370 1.21515 0.99577 1.00083 0.93123 1.19762 1.02387 0.96473 0.94904 1.21830 0.95353 0.84725 0.97230 0.94406 0.97457 0.97732 0.89978 0.90505 0.88838 0.90061 0.92658 0.92298 0.74280 0.91573 0.85102 0.86914 0.88713 0.83025 0.83409 0.84871 0.86095 0.95686 0.94894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.23 10.31 21.65 0.22 -59.00 16 2 C -0.07 -4.12 5.49 84.86 0.47 -3.65 16 3 Si 0.98 47.45 29.55 68.60 2.03 49.48 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.24 -14.42 10.28 84.03 0.86 -13.56 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 9 N -0.63 -34.02 3.40 -691.93 -2.35 -36.37 16 10 C 0.18 9.24 5.37 86.73 0.47 9.71 16 11 C -0.12 -4.37 6.42 31.78 0.20 -4.16 16 12 C -0.08 -2.79 3.03 -9.41 -0.03 -2.82 16 13 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 14 C -0.10 -2.31 4.84 30.59 0.15 -2.16 16 15 C 0.12 3.11 5.56 86.38 0.48 3.59 16 16 N -0.70 -15.89 5.47 -463.06 -2.54 -18.42 16 17 C 0.53 13.53 6.88 87.66 0.60 14.13 16 18 O -0.57 -18.84 14.77 -3.04 -0.04 -18.88 16 19 C 0.13 2.51 3.22 29.09 0.09 2.61 16 20 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 21 O -0.38 -5.87 9.20 -148.98 -1.37 -7.24 16 22 C 0.05 0.46 6.85 71.97 0.49 0.95 16 23 C -0.11 -0.91 6.00 29.85 0.18 -0.73 16 24 C -0.07 -1.06 5.78 -19.84 -0.11 -1.17 16 25 C -0.13 -1.55 9.67 22.31 0.22 -1.33 16 26 C -0.11 -1.53 10.05 22.24 0.22 -1.30 16 27 C -0.14 -2.45 10.05 22.23 0.22 -2.23 16 28 C -0.12 -2.78 9.06 22.32 0.20 -2.58 16 29 C -0.13 -2.64 5.46 -19.86 -0.11 -2.75 16 30 C 0.13 5.61 6.04 86.84 0.52 6.14 16 31 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.01 0.41 7.38 -2.39 -0.02 0.39 16 33 H 0.00 0.25 7.51 -2.39 -0.02 0.24 16 34 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.08 2.45 8.04 -2.39 -0.02 2.44 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 1.80 8.04 -2.38 -0.02 1.78 16 38 H 0.06 1.63 7.59 -2.39 -0.02 1.62 16 39 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.42 7.57 7.34 -92.71 -0.68 6.89 16 41 H 0.07 0.50 8.07 -2.39 -0.02 0.49 16 42 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 46 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 47 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 48 H 0.12 3.22 5.83 -2.91 -0.02 3.20 16 49 H 0.03 1.03 7.96 -2.39 -0.02 1.01 16 50 H 0.03 1.39 8.10 -2.38 -0.02 1.38 16 Total: -1.00 -77.12 395.37 1.34 -75.78 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.25 Total: 15.97 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 5.13 Total: -1.32 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -4.66 Total: -113.79 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -1.42 Total: -26.12 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -77.12 1.34 -75.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664731120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.979 kcal (2) G-P(sol) polarization free energy of solvation -77.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds