Wall clock time and date at job start Wed Apr 1 2020 02:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00089 * 2 1 4 4 H 1.48499 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47050 * 300.00279 * 3 2 1 6 6 H 1.48503 * 109.46924 * 59.99979 * 3 2 1 7 7 C 1.38811 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99806 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99756 * 174.60214 * 9 7 2 11 11 C 1.52996 * 110.01703 * 301.42001 * 10 9 7 12 12 N 1.46503 * 109.47160 * 303.90546 * 11 10 9 13 13 C 1.34778 * 119.99829 * 175.29552 * 12 11 10 14 14 O 1.21282 * 120.00100 * 0.27637 * 13 12 11 15 15 C 1.50701 * 119.99687 * 180.27303 * 13 12 11 16 16 C 1.53000 * 109.46902 * 180.02562 * 15 13 12 17 17 H 1.09003 * 110.13359 * 55.24401 * 16 15 13 18 18 O 1.43942 * 110.15592 * 293.54856 * 16 15 13 19 19 C 1.43943 * 104.95167 * 212.43673 * 18 16 15 20 20 C 1.51090 * 105.95695 * 28.44119 * 19 18 16 21 21 C 1.37967 * 132.68677 * 162.31227 * 20 19 18 22 22 C 1.38291 * 119.91657 * 179.97438 * 21 20 19 23 23 C 1.38263 * 120.04295 * 359.97438 * 22 21 20 24 24 C 1.38295 * 120.04151 * 0.03539 * 23 22 21 25 25 C 1.37966 * 119.91692 * 359.94139 * 24 23 22 26 26 C 1.54260 * 110.07140 * 62.83959 * 10 9 7 27 27 C 1.54895 * 104.19643 * 95.69777 * 26 10 9 28 28 C 1.54882 * 102.74832 * 37.93836 * 27 26 10 29 29 C 1.53876 * 110.02737 * 180.02562 * 10 9 7 30 30 H 0.96997 * 120.00636 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00303 * 354.60173 * 9 7 2 32 32 H 1.09004 * 109.47018 * 183.90445 * 11 10 9 33 33 H 1.09001 * 109.47318 * 63.90529 * 11 10 9 34 34 H 0.96994 * 120.00175 * 355.56721 * 12 11 10 35 35 H 1.09001 * 109.47499 * 299.99871 * 15 13 12 36 36 H 1.09002 * 109.47105 * 60.00129 * 15 13 12 37 37 H 1.08998 * 110.15834 * 147.56226 * 19 18 16 38 38 H 1.09007 * 110.15407 * 269.32077 * 19 18 16 39 39 H 1.07998 * 120.04231 * 359.97305 * 21 20 19 40 40 H 1.07998 * 119.97658 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.98136 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.04303 * 179.97438 * 24 23 22 43 43 H 1.09011 * 110.48282 * 214.37113 * 26 10 9 44 44 H 1.08999 * 110.49050 * 337.01741 * 26 10 9 45 45 H 1.08997 * 110.75060 * 279.62259 * 27 26 10 46 46 H 1.09000 * 110.75486 * 156.25666 * 27 26 10 47 47 H 1.09002 * 110.48809 * 203.38099 * 28 27 26 48 48 H 1.09001 * 110.48854 * 80.74042 * 28 27 26 49 49 H 1.08994 * 110.03603 * 359.95128 * 29 10 9 50 50 H 1.09003 * 110.02937 * 121.38519 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0532 -3.6540 -0.1205 11 6 2.8604 -3.6730 -1.4200 12 7 1.9647 -3.4360 -2.5548 13 6 2.4701 -3.3146 -3.7983 14 8 3.6659 -3.4065 -3.9786 15 6 1.5492 -3.0647 -4.9648 16 6 2.3710 -2.9688 -6.2518 17 1 2.9803 -3.8641 -6.3755 18 8 3.2094 -1.7992 -6.2190 19 6 3.3020 -1.3701 -7.5899 20 6 2.0217 -1.8207 -8.2536 21 6 1.3948 -1.4500 -9.4254 22 6 0.2022 -2.0484 -9.7888 23 6 -0.3610 -3.0173 -8.9790 24 6 0.2672 -3.3887 -7.8043 25 6 1.4573 -2.7921 -7.4420 26 6 2.9932 -3.8409 1.0883 27 6 2.1774 -4.7160 2.0722 28 6 1.4402 -5.6966 1.1268 29 6 1.0657 -4.8338 -0.0959 30 1 -0.4851 0.8400 -0.0004 31 1 0.3589 -2.3900 0.0789 32 1 3.3425 -4.6439 -1.5342 33 1 3.6200 -2.8918 -1.3874 34 1 1.0083 -3.3625 -2.4107 35 1 0.8379 -3.8863 -5.0487 36 1 1.0091 -2.1310 -4.8078 37 1 3.3885 -0.2847 -7.6387 38 1 4.1601 -1.8379 -8.0727 39 1 1.8349 -0.6935 -10.0581 40 1 -0.2895 -1.7587 -10.7056 41 1 -1.2926 -3.4837 -9.2636 42 1 -0.1729 -4.1452 -7.1716 43 1 3.9053 -4.3557 0.7862 44 1 3.2295 -2.8776 1.5404 45 1 1.4651 -4.1082 2.6301 46 1 2.8395 -5.2560 2.7490 47 1 0.5431 -6.0876 1.6069 48 1 2.1015 -6.5110 0.8309 49 1 0.0453 -4.4647 0.0061 50 1 1.1616 -5.4200 -1.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666804397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:59 Heat of formation + Delta-G solvation = -44.102590 kcal Electronic energy + Delta-G solvation = -30478.663751 eV Core-core repulsion = 26470.641928 eV Total energy + Delta-G solvation = -4008.021822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.91302 -39.26626 -38.09984 -37.28583 -33.98852 -33.23812 -32.70140 -31.39253 -30.72146 -30.09407 -28.25471 -27.82167 -26.22510 -24.68576 -23.90049 -23.05087 -21.73489 -21.17054 -20.34956 -19.52385 -18.53924 -17.27389 -16.95232 -16.63765 -16.34313 -15.87015 -15.63379 -15.52058 -15.02023 -14.71706 -14.61066 -14.22266 -14.00986 -13.78025 -13.50226 -13.30450 -13.05611 -12.89603 -12.81958 -12.55478 -12.32286 -12.11088 -11.95112 -11.57882 -11.42152 -11.29915 -11.10391 -11.00586 -10.75651 -10.71780 -10.61426 -10.47368 -10.20234 -10.12544 -9.99838 -9.80949 -9.61961 -9.34337 -9.09126 -8.88265 -8.71172 -8.31230 -6.98081 -5.78191 -3.06697 1.03097 1.12145 3.20301 3.44585 3.45463 3.52397 3.53742 3.77338 3.90341 4.06931 4.51856 4.60391 4.70987 4.78534 4.96924 5.09771 5.13547 5.18515 5.21813 5.24962 5.27605 5.37019 5.38635 5.45939 5.59300 5.66362 5.69289 5.71841 5.80226 5.83397 5.95737 5.96092 5.97843 6.10102 6.14648 6.20364 6.22240 6.24273 6.28706 6.32650 6.47057 6.59082 6.65231 6.67382 6.79140 6.82443 6.86031 7.04504 7.18843 7.74949 8.17363 8.40605 8.84175 9.52806 10.06287 10.41614 11.44008 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010561 B = 0.003105 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.651745 B = 9016.005607 C =10369.749115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.229 4.229 8 H 0.070 0.930 9 N -0.711 5.711 10 C 0.189 3.811 11 C 0.121 3.879 12 N -0.702 5.702 13 C 0.512 3.488 14 O -0.547 6.547 15 C -0.139 4.139 16 C 0.141 3.859 17 H 0.091 0.909 18 O -0.335 6.335 19 C 0.086 3.914 20 C -0.128 4.128 21 C -0.096 4.096 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.091 4.091 25 C -0.123 4.123 26 C -0.132 4.132 27 C -0.117 4.117 28 C -0.121 4.121 29 C -0.125 4.125 30 H 0.253 0.747 31 H 0.384 0.616 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.401 0.599 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.068 0.932 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 -10.394 -14.771 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.204 4.204 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.361 4.361 8 H 0.088 0.912 9 N -0.352 5.352 10 C 0.096 3.904 11 C -0.005 4.005 12 N -0.351 5.351 13 C 0.298 3.702 14 O -0.425 6.425 15 C -0.179 4.179 16 C 0.083 3.917 17 H 0.108 0.892 18 O -0.253 6.253 19 C 0.009 3.991 20 C -0.128 4.128 21 C -0.114 4.114 22 C -0.136 4.136 23 C -0.135 4.135 24 C -0.109 4.109 25 C -0.123 4.123 26 C -0.172 4.172 27 C -0.155 4.155 28 C -0.158 4.158 29 C -0.163 4.163 30 H 0.063 0.937 31 H 0.218 0.782 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.235 0.765 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.046 -10.207 -14.695 17.892 hybrid contribution -0.489 1.131 -0.128 1.239 sum -0.443 -9.076 -14.823 17.386 Atomic orbital electron populations 1.69652 1.04996 1.25443 1.57970 1.24660 0.95398 0.97463 1.02919 0.86221 0.79096 0.84516 0.77050 1.20530 1.21956 1.22023 1.19133 0.91042 0.83820 1.42064 0.91231 1.42551 1.05954 0.99482 1.87233 1.20464 0.91301 0.87142 0.91447 1.21837 0.93171 0.99384 0.86089 1.45712 1.11368 1.71910 1.06158 1.20245 0.88990 0.76803 0.84203 1.90673 1.15783 1.50812 1.85205 1.21798 0.98495 1.05041 0.92556 1.21018 0.89272 0.90590 0.90830 0.89180 1.89313 1.69158 1.43510 1.23287 1.21791 0.93639 1.00917 0.82753 1.21158 0.97553 0.98056 0.96027 1.20401 0.95403 1.00095 0.95548 1.21128 0.95666 0.96861 0.99898 1.21137 1.00029 0.97887 0.94479 1.20452 0.93695 0.99883 0.96900 1.21113 0.96186 0.97544 0.97477 1.22828 0.97330 1.00273 0.96789 1.22385 0.98746 0.97076 0.97250 1.22300 0.99549 0.97630 0.96351 1.22426 0.99821 0.96360 0.97734 0.93698 0.78168 0.93325 0.91606 0.76466 0.88030 0.87815 0.88604 0.90619 0.85783 0.85588 0.85484 0.85564 0.92940 0.90315 0.91423 0.92762 0.92405 0.92315 0.91340 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.95 13.06 55.49 0.72 -26.23 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 22.61 29.55 -169.99 -5.02 17.58 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.23 -6.01 8.39 -15.06 -0.13 -6.13 16 8 H 0.07 1.86 7.23 -52.48 -0.38 1.48 16 9 N -0.71 -16.06 4.75 -46.20 -0.22 -16.28 16 10 C 0.19 3.44 0.68 -130.70 -0.09 3.35 16 11 C 0.12 2.28 3.99 -4.04 -0.02 2.27 16 12 N -0.70 -12.53 5.10 -60.29 -0.31 -12.84 16 13 C 0.51 9.33 7.73 -10.98 -0.08 9.24 16 14 O -0.55 -11.80 15.52 -6.40 -0.10 -11.90 16 15 C -0.14 -2.00 5.36 -27.88 -0.15 -2.14 16 16 C 0.14 2.03 2.85 -27.69 -0.08 1.95 16 17 H 0.09 1.30 7.98 -51.93 -0.41 0.89 16 18 O -0.33 -5.65 10.76 -47.19 -0.51 -6.16 16 19 C 0.09 1.08 7.63 36.20 0.28 1.35 16 20 C -0.13 -1.53 6.32 -104.40 -0.66 -2.19 16 21 C -0.10 -0.95 10.04 -39.66 -0.40 -1.35 16 22 C -0.12 -1.03 10.05 -39.55 -0.40 -1.43 16 23 C -0.12 -1.05 10.05 -39.55 -0.40 -1.45 16 24 C -0.09 -0.94 9.82 -39.66 -0.39 -1.33 16 25 C -0.12 -1.52 5.73 -104.40 -0.60 -2.12 16 26 C -0.13 -2.30 5.94 -25.07 -0.15 -2.45 16 27 C -0.12 -1.76 6.91 -24.74 -0.17 -1.93 16 28 C -0.12 -1.63 6.83 -25.08 -0.17 -1.80 16 29 C -0.13 -1.90 5.81 -25.62 -0.15 -2.05 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.38 9.26 7.28 -40.82 -0.30 8.96 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.45 7.49 -51.93 -0.39 1.06 16 34 H 0.40 6.81 7.99 -40.82 -0.33 6.48 16 35 H 0.10 1.10 7.93 -51.93 -0.41 0.69 16 36 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 37 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.13 1.04 7.93 -52.49 -0.42 0.62 16 43 H 0.05 0.84 7.86 -51.92 -0.41 0.43 16 44 H 0.08 1.57 7.12 -51.93 -0.37 1.20 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.07 1.08 7.44 -51.93 -0.39 0.69 16 50 H 0.06 0.85 7.55 -51.93 -0.39 0.46 16 LS Contribution 401.10 15.07 6.04 6.04 Total: -1.00 -32.41 401.10 -11.21 -43.61 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -7.98 Total: 14.69 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -3.84 Total: -8.53 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.20 Total: -55.35 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.61 Total: -18.06 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.41 -11.21 -43.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666804397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.489 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds