Wall clock time and date at job start Wed Apr 1 2020 02:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00089 * 2 1 4 4 H 1.48499 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47050 * 300.00279 * 3 2 1 6 6 H 1.48503 * 109.46924 * 59.99979 * 3 2 1 7 7 C 1.38811 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99806 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99756 * 174.60214 * 9 7 2 11 11 C 1.52996 * 110.01703 * 301.42001 * 10 9 7 12 12 N 1.46503 * 109.47160 * 303.90546 * 11 10 9 13 13 C 1.34778 * 119.99829 * 175.29552 * 12 11 10 14 14 O 1.21282 * 120.00100 * 0.27637 * 13 12 11 15 15 C 1.50701 * 119.99687 * 180.27303 * 13 12 11 16 16 C 1.53000 * 109.46902 * 180.02562 * 15 13 12 17 17 H 1.09003 * 110.13359 * 55.24401 * 16 15 13 18 18 O 1.43942 * 110.15592 * 293.54856 * 16 15 13 19 19 C 1.43943 * 104.95167 * 212.43673 * 18 16 15 20 20 C 1.51090 * 105.95695 * 28.44119 * 19 18 16 21 21 C 1.37967 * 132.68677 * 162.31227 * 20 19 18 22 22 C 1.38291 * 119.91657 * 179.97438 * 21 20 19 23 23 C 1.38263 * 120.04295 * 359.97438 * 22 21 20 24 24 C 1.38295 * 120.04151 * 0.03539 * 23 22 21 25 25 C 1.37966 * 119.91692 * 359.94139 * 24 23 22 26 26 C 1.54260 * 110.07140 * 62.83959 * 10 9 7 27 27 C 1.54895 * 104.19643 * 95.69777 * 26 10 9 28 28 C 1.54882 * 102.74832 * 37.93836 * 27 26 10 29 29 C 1.53876 * 110.02737 * 180.02562 * 10 9 7 30 30 H 0.96997 * 120.00636 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00303 * 354.60173 * 9 7 2 32 32 H 1.09004 * 109.47018 * 183.90445 * 11 10 9 33 33 H 1.09001 * 109.47318 * 63.90529 * 11 10 9 34 34 H 0.96994 * 120.00175 * 355.56721 * 12 11 10 35 35 H 1.09001 * 109.47499 * 299.99871 * 15 13 12 36 36 H 1.09002 * 109.47105 * 60.00129 * 15 13 12 37 37 H 1.08998 * 110.15834 * 147.56226 * 19 18 16 38 38 H 1.09007 * 110.15407 * 269.32077 * 19 18 16 39 39 H 1.07998 * 120.04231 * 359.97305 * 21 20 19 40 40 H 1.07998 * 119.97658 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.98136 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.04303 * 179.97438 * 24 23 22 43 43 H 1.09011 * 110.48282 * 214.37113 * 26 10 9 44 44 H 1.08999 * 110.49050 * 337.01741 * 26 10 9 45 45 H 1.08997 * 110.75060 * 279.62259 * 27 26 10 46 46 H 1.09000 * 110.75486 * 156.25666 * 27 26 10 47 47 H 1.09002 * 110.48809 * 203.38099 * 28 27 26 48 48 H 1.09001 * 110.48854 * 80.74042 * 28 27 26 49 49 H 1.08994 * 110.03603 * 359.95128 * 29 10 9 50 50 H 1.09003 * 110.02937 * 121.38519 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0532 -3.6540 -0.1205 11 6 2.8604 -3.6730 -1.4200 12 7 1.9647 -3.4360 -2.5548 13 6 2.4701 -3.3146 -3.7983 14 8 3.6659 -3.4065 -3.9786 15 6 1.5492 -3.0647 -4.9648 16 6 2.3710 -2.9688 -6.2518 17 1 2.9803 -3.8641 -6.3755 18 8 3.2094 -1.7992 -6.2190 19 6 3.3020 -1.3701 -7.5899 20 6 2.0217 -1.8207 -8.2536 21 6 1.3948 -1.4500 -9.4254 22 6 0.2022 -2.0484 -9.7888 23 6 -0.3610 -3.0173 -8.9790 24 6 0.2672 -3.3887 -7.8043 25 6 1.4573 -2.7921 -7.4420 26 6 2.9932 -3.8409 1.0883 27 6 2.1774 -4.7160 2.0722 28 6 1.4402 -5.6966 1.1268 29 6 1.0657 -4.8338 -0.0959 30 1 -0.4851 0.8400 -0.0004 31 1 0.3589 -2.3900 0.0789 32 1 3.3425 -4.6439 -1.5342 33 1 3.6200 -2.8918 -1.3874 34 1 1.0083 -3.3625 -2.4107 35 1 0.8379 -3.8863 -5.0487 36 1 1.0091 -2.1310 -4.8078 37 1 3.3885 -0.2847 -7.6387 38 1 4.1601 -1.8379 -8.0727 39 1 1.8349 -0.6935 -10.0581 40 1 -0.2895 -1.7587 -10.7056 41 1 -1.2926 -3.4837 -9.2636 42 1 -0.1729 -4.1452 -7.1716 43 1 3.9053 -4.3557 0.7862 44 1 3.2295 -2.8776 1.5404 45 1 1.4651 -4.1082 2.6301 46 1 2.8395 -5.2560 2.7490 47 1 0.5431 -6.0876 1.6069 48 1 2.1015 -6.5110 0.8309 49 1 0.0453 -4.4647 0.0061 50 1 1.1616 -5.4200 -1.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666804397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:58 Heat of formation + Delta-G solvation = -63.811778 kcal Electronic energy + Delta-G solvation = -30479.518405 eV Core-core repulsion = 26470.641928 eV Total energy + Delta-G solvation = -4008.876477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.87740 -40.69885 -39.49694 -38.24663 -35.53288 -35.06850 -33.75618 -32.41639 -32.24764 -31.15457 -29.56127 -29.36166 -27.32386 -26.10366 -25.25695 -24.50029 -22.57000 -22.20735 -21.57598 -20.91155 -20.05102 -18.93980 -18.42676 -17.67887 -17.49971 -17.05687 -16.97187 -16.50393 -16.25437 -16.17732 -15.91189 -15.69795 -15.25804 -15.19409 -14.81746 -14.58293 -14.23993 -14.09212 -13.91716 -13.74812 -13.56631 -13.28915 -13.21934 -13.06756 -12.95832 -12.70099 -12.46779 -12.32844 -12.20679 -12.16441 -11.86766 -11.81813 -11.71459 -11.58642 -11.36874 -11.30892 -11.05380 -10.96202 -10.74767 -9.87122 -9.84505 -9.55767 -8.94512 -7.92473 -5.16865 0.25561 0.38503 1.40155 1.44150 1.50404 1.74891 2.37588 2.55594 2.73591 2.87723 3.20121 3.39397 3.56971 3.78103 3.79362 3.85870 3.92103 4.02069 4.06116 4.16466 4.21372 4.26786 4.37998 4.39931 4.46393 4.49279 4.60158 4.62095 4.67910 4.75113 4.78991 4.81748 4.87719 4.88582 4.99501 5.06710 5.08714 5.15385 5.20405 5.28346 5.40848 5.41450 5.43373 5.50956 5.53049 5.59896 5.62662 5.71134 5.80137 6.00032 6.32300 6.71380 7.38310 7.39982 8.13578 8.38131 9.30079 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010561 B = 0.003105 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.651745 B = 9016.005607 C =10369.749115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.062 4.062 3 Si 0.945 3.055 4 H -0.279 1.279 5 H -0.300 1.300 6 H -0.292 1.292 7 C -0.211 4.211 8 H 0.059 0.941 9 N -0.713 5.713 10 C 0.184 3.816 11 C 0.128 3.872 12 N -0.699 5.699 13 C 0.506 3.494 14 O -0.585 6.585 15 C -0.129 4.129 16 C 0.140 3.860 17 H 0.081 0.919 18 O -0.378 6.378 19 C 0.080 3.920 20 C -0.147 4.147 21 C -0.102 4.102 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.097 4.097 25 C -0.142 4.142 26 C -0.133 4.133 27 C -0.113 4.113 28 C -0.112 4.112 29 C -0.119 4.119 30 H 0.248 0.752 31 H 0.377 0.623 32 H 0.066 0.934 33 H 0.025 0.975 34 H 0.406 0.594 35 H 0.141 0.859 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.144 0.856 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.145 0.855 43 H 0.068 0.932 44 H 0.045 0.955 45 H 0.049 0.951 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.063 0.937 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 -12.410 -16.129 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.255 4.255 3 Si 0.777 3.223 4 H -0.205 1.205 5 H -0.228 1.228 6 H -0.219 1.219 7 C -0.343 4.343 8 H 0.077 0.923 9 N -0.353 5.353 10 C 0.093 3.907 11 C 0.002 3.998 12 N -0.348 5.348 13 C 0.293 3.707 14 O -0.466 6.466 15 C -0.169 4.169 16 C 0.082 3.918 17 H 0.098 0.902 18 O -0.297 6.297 19 C 0.004 3.996 20 C -0.147 4.147 21 C -0.120 4.120 22 C -0.133 4.133 23 C -0.135 4.135 24 C -0.115 4.115 25 C -0.142 4.142 26 C -0.173 4.173 27 C -0.150 4.150 28 C -0.149 4.149 29 C -0.157 4.157 30 H 0.057 0.943 31 H 0.210 0.790 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.242 0.758 35 H 0.159 0.841 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.162 0.838 40 H 0.174 0.826 41 H 0.174 0.826 42 H 0.163 0.837 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.098 0.902 49 H 0.082 0.918 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.336 -12.253 -16.048 20.235 hybrid contribution 0.014 1.705 0.250 1.723 sum -1.323 -10.548 -15.798 19.042 Atomic orbital electron populations 1.69742 1.05705 1.25334 1.60197 1.25154 0.96070 0.99627 1.04638 0.85489 0.78203 0.82137 0.76507 1.20450 1.22777 1.21929 1.19224 0.90642 0.85193 1.39250 0.92326 1.42611 1.05628 1.00110 1.86991 1.20736 0.92087 0.86557 0.91302 1.21715 0.92613 0.98740 0.86753 1.45732 1.11478 1.71629 1.05996 1.20945 0.89041 0.75670 0.85007 1.90648 1.17650 1.52477 1.85795 1.21821 0.98176 1.05949 0.90917 1.20999 0.89469 0.89571 0.91725 0.90157 1.89248 1.70027 1.44555 1.25866 1.21940 0.94905 1.01410 0.81379 1.21217 0.97486 0.98787 0.97189 1.20720 0.95813 1.00521 0.94969 1.21560 0.94988 0.96038 1.00745 1.21551 1.00790 0.97515 0.93645 1.20764 0.92892 1.00045 0.97799 1.21020 0.97269 0.99022 0.96929 1.22790 0.98277 0.99456 0.96816 1.22352 0.98509 0.96943 0.97217 1.22293 1.00543 0.97268 0.94815 1.22374 0.98365 0.95234 0.99713 0.94322 0.78982 0.91600 0.95669 0.75800 0.84094 0.88694 0.87988 0.89742 0.83835 0.82612 0.82557 0.83680 0.91381 0.93650 0.93229 0.90422 0.90602 0.90176 0.91812 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.44 13.06 21.65 0.28 -56.16 16 2 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 3 Si 0.94 47.61 29.55 68.60 2.03 49.63 16 4 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 5 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 6 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 7 C -0.21 -11.30 8.39 84.03 0.70 -10.59 16 8 H 0.06 3.25 7.23 -2.91 -0.02 3.22 16 9 N -0.71 -32.62 4.75 -300.07 -1.43 -34.05 16 10 C 0.18 6.61 0.68 4.32 0.00 6.62 16 11 C 0.13 4.84 3.99 86.38 0.34 5.18 16 12 N -0.70 -24.97 5.10 -463.05 -2.36 -27.33 16 13 C 0.51 18.71 7.73 87.66 0.68 19.38 16 14 O -0.58 -26.09 15.52 8.40 0.13 -25.96 16 15 C -0.13 -3.69 5.36 29.85 0.16 -3.53 16 16 C 0.14 4.12 2.85 29.97 0.09 4.20 16 17 H 0.08 2.42 7.98 -2.39 -0.02 2.40 16 18 O -0.38 -13.38 10.76 -137.55 -1.48 -14.86 16 19 C 0.08 2.07 7.63 71.36 0.54 2.62 16 20 C -0.15 -3.44 6.32 -19.72 -0.12 -3.56 16 21 C -0.10 -1.82 10.04 22.22 0.22 -1.60 16 22 C -0.12 -1.66 10.05 22.29 0.22 -1.44 16 23 C -0.12 -1.71 10.05 22.29 0.22 -1.49 16 24 C -0.10 -1.77 9.82 22.22 0.22 -1.56 16 25 C -0.14 -3.42 5.73 -19.72 -0.11 -3.53 16 26 C -0.13 -4.57 5.94 31.67 0.19 -4.38 16 27 C -0.11 -3.16 6.91 31.88 0.22 -2.94 16 28 C -0.11 -2.63 6.83 31.66 0.22 -2.42 16 29 C -0.12 -3.34 5.81 31.32 0.18 -3.15 16 30 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.38 18.35 7.28 -92.71 -0.67 17.67 16 32 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.02 1.15 7.49 -2.39 -0.02 1.13 16 34 H 0.41 13.61 7.99 -92.71 -0.74 12.87 16 35 H 0.14 2.80 7.93 -2.39 -0.02 2.78 16 36 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 41 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 42 H 0.15 1.97 7.93 -2.91 -0.02 1.95 16 43 H 0.07 2.10 7.86 -2.38 -0.02 2.08 16 44 H 0.04 1.84 7.12 -2.39 -0.02 1.83 16 45 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.06 1.88 7.44 -2.39 -0.02 1.86 16 50 H 0.08 1.95 7.55 -2.39 -0.02 1.93 16 Total: -1.00 -73.08 401.10 1.15 -71.93 By element: Atomic # 1 Polarization: 42.49 SS G_CDS: -0.46 Total: 42.03 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 4.44 Total: -5.23 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -3.50 Total: -117.54 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -1.35 Total: -40.82 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.63 kcal Total: -73.08 1.15 -71.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666804397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.115 kcal (2) G-P(sol) polarization free energy of solvation -73.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds