Wall clock time and date at job start Wed Apr 1 2020 02:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99810 * 2 1 4 4 H 1.48491 * 109.47339 * 270.00401 * 3 2 1 5 5 H 1.48509 * 109.46953 * 30.00337 * 3 2 1 6 6 H 1.48497 * 109.47057 * 150.00121 * 3 2 1 7 7 C 1.38811 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00145 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99964 * 174.58556 * 9 7 2 11 11 C 1.52997 * 110.01453 * 299.96666 * 10 9 7 12 12 N 1.46492 * 109.47464 * 303.76352 * 11 10 9 13 13 C 1.34783 * 120.00410 * 184.98191 * 12 11 10 14 14 O 1.21280 * 119.99747 * 0.02562 * 13 12 11 15 15 C 1.50692 * 120.00082 * 179.97438 * 13 12 11 16 16 C 1.52998 * 109.47146 * 179.97438 * 15 13 12 17 17 H 1.09002 * 110.13099 * 305.70330 * 16 15 13 18 18 O 1.43941 * 110.15251 * 67.39902 * 16 15 13 19 19 C 1.44043 * 104.90171 * 147.51639 * 18 16 15 20 20 C 1.51079 * 105.98963 * 331.64398 * 19 18 16 21 21 C 1.37971 * 132.68427 * 197.63747 * 20 19 18 22 22 C 1.38296 * 119.91790 * 180.02562 * 21 20 19 23 23 C 1.38260 * 120.04247 * 0.02562 * 22 21 20 24 24 C 1.38295 * 120.04308 * 0.02562 * 23 22 21 25 25 C 1.37969 * 119.91786 * 359.97260 * 24 23 22 26 26 C 1.54271 * 110.03133 * 61.35420 * 10 9 7 27 27 C 1.54972 * 104.15413 * 95.75674 * 26 10 9 28 28 C 1.54888 * 102.77886 * 37.88984 * 27 26 10 29 29 C 1.53874 * 110.03460 * 178.57428 * 10 9 7 30 30 H 0.96995 * 119.99997 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99867 * 354.58261 * 9 7 2 32 32 H 1.09007 * 109.47322 * 63.76484 * 11 10 9 33 33 H 1.09003 * 109.47348 * 183.75795 * 11 10 9 34 34 H 0.97003 * 119.99902 * 4.98766 * 12 11 10 35 35 H 1.09005 * 109.47345 * 300.00171 * 15 13 12 36 36 H 1.09003 * 109.47146 * 60.00028 * 15 13 12 37 37 H 1.08994 * 110.17657 * 212.49093 * 19 18 16 38 38 H 1.09004 * 110.15167 * 90.78867 * 19 18 16 39 39 H 1.08000 * 120.04006 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.97992 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.98032 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.04391 * 180.02562 * 24 23 22 43 43 H 1.08995 * 110.48709 * 214.40107 * 26 10 9 44 44 H 1.09000 * 110.48676 * 337.05365 * 26 10 9 45 45 H 1.08997 * 110.71783 * 279.57099 * 27 26 10 46 46 H 1.09004 * 110.75941 * 156.22061 * 27 26 10 47 47 H 1.08998 * 110.48284 * 203.40520 * 28 27 26 48 48 H 1.09000 * 110.48962 * 80.76131 * 28 27 26 49 49 H 1.09001 * 110.03010 * 359.95557 * 29 10 9 50 50 H 1.09002 * 110.02791 * 121.33237 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0533 -3.6538 -0.1219 11 6 2.8326 -3.6869 -1.4381 12 7 1.9118 -3.4686 -2.5564 13 6 2.3593 -3.5560 -3.8248 14 8 3.5242 -3.8158 -4.0403 15 6 1.4120 -3.3321 -4.9751 16 6 2.1681 -3.4874 -6.2961 17 1 3.0375 -2.8301 -6.3103 18 8 2.5778 -4.8556 -6.4751 19 6 2.5352 -5.0719 -7.8985 20 6 1.4792 -4.1318 -8.4309 21 6 0.7757 -4.0905 -9.6171 22 6 -0.1517 -3.0879 -9.8345 23 6 -0.3733 -2.1278 -8.8646 24 6 0.3325 -2.1685 -7.6760 25 6 1.2577 -3.1687 -7.4591 26 6 3.0196 -3.8231 1.0687 27 6 2.2267 -4.6891 2.0802 28 6 1.4717 -5.6826 1.1626 29 6 1.0693 -4.8353 -0.0621 30 1 -0.4850 0.8400 0.0004 31 1 0.3589 -2.3899 0.0773 32 1 3.5893 -2.9023 -1.4321 33 1 3.3163 -4.6573 -1.5498 34 1 0.9801 -3.2611 -2.3841 35 1 0.6054 -4.0639 -4.9294 36 1 0.9947 -2.3271 -4.9118 37 1 2.2615 -6.1047 -8.1138 38 1 3.5032 -4.8399 -8.3428 39 1 0.9491 -4.8402 -10.3748 40 1 -0.7026 -3.0544 -10.7628 41 1 -1.0975 -1.3451 -9.0356 42 1 0.1591 -1.4188 -6.9183 43 1 3.9265 -4.3391 0.7536 44 1 3.2626 -2.8536 1.5036 45 1 1.5252 -4.0761 2.6459 46 1 2.9044 -5.2197 2.7490 47 1 0.5860 -6.0694 1.6665 48 1 2.1283 -6.4992 0.8624 49 1 0.0504 -4.4669 0.0571 50 1 1.1463 -5.4317 -0.9713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666804398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:03 Heat of formation + Delta-G solvation = -45.083318 kcal Electronic energy + Delta-G solvation = -30372.861711 eV Core-core repulsion = 26364.797361 eV Total energy + Delta-G solvation = -4008.064350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.94355 -39.28105 -38.10540 -37.31837 -34.00016 -33.26118 -32.72039 -31.42743 -30.74257 -30.11337 -28.24094 -27.84048 -26.26095 -24.70203 -23.91743 -23.07736 -21.75277 -21.17191 -20.33647 -19.54816 -18.55045 -17.28568 -16.96796 -16.67390 -16.31721 -15.90148 -15.66305 -15.62359 -14.92673 -14.80869 -14.61203 -14.21120 -14.07233 -13.80273 -13.47324 -13.32586 -13.16807 -12.96867 -12.76290 -12.54153 -12.29661 -12.21242 -11.92408 -11.55600 -11.45791 -11.34662 -11.11158 -11.02706 -10.77806 -10.69965 -10.62143 -10.50858 -10.22306 -10.11303 -10.05915 -9.86707 -9.65087 -9.36622 -9.10314 -8.91437 -8.73855 -8.32204 -7.02111 -5.82220 -3.11006 1.01268 1.11036 3.18737 3.40433 3.44120 3.47153 3.47839 3.73142 3.86002 4.04444 4.48202 4.55756 4.70063 4.78227 4.96953 5.10545 5.14531 5.15254 5.20421 5.22965 5.26450 5.34288 5.37134 5.43707 5.56183 5.63863 5.70935 5.73938 5.79641 5.82643 5.89631 5.97181 5.98413 6.11963 6.13616 6.20457 6.22408 6.23581 6.30033 6.34541 6.47676 6.59457 6.64297 6.65259 6.76499 6.79776 6.84888 7.03774 7.17901 7.69959 8.17069 8.36724 8.81998 9.48426 10.02766 10.38354 11.39825 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010595 B = 0.003018 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.059855 B = 9276.597547 C =10953.872111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.901 3.099 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.189 3.811 11 C 0.121 3.879 12 N -0.702 5.702 13 C 0.511 3.489 14 O -0.548 6.548 15 C -0.138 4.138 16 C 0.140 3.860 17 H 0.093 0.907 18 O -0.339 6.339 19 C 0.087 3.913 20 C -0.130 4.130 21 C -0.097 4.097 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.090 4.090 25 C -0.122 4.122 26 C -0.131 4.131 27 C -0.117 4.117 28 C -0.121 4.121 29 C -0.125 4.125 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.403 0.597 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.067 0.933 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.359 -10.084 -14.570 17.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.732 3.268 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.362 4.362 8 H 0.088 0.912 9 N -0.353 5.353 10 C 0.097 3.903 11 C -0.005 4.005 12 N -0.353 5.353 13 C 0.296 3.704 14 O -0.426 6.426 15 C -0.178 4.178 16 C 0.082 3.918 17 H 0.110 0.890 18 O -0.257 6.257 19 C 0.010 3.990 20 C -0.131 4.131 21 C -0.115 4.115 22 C -0.136 4.136 23 C -0.134 4.134 24 C -0.108 4.108 25 C -0.123 4.123 26 C -0.172 4.172 27 C -0.154 4.154 28 C -0.159 4.159 29 C -0.163 4.163 30 H 0.064 0.936 31 H 0.219 0.781 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.238 0.762 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.086 0.914 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.358 -10.272 -14.530 17.797 hybrid contribution -0.414 1.392 -0.111 1.457 sum -0.772 -8.880 -14.641 17.140 Atomic orbital electron populations 1.69649 1.04981 1.25579 1.57815 1.24675 0.95405 0.97450 1.02968 0.86286 0.78805 0.84191 0.77502 1.21842 1.21899 1.20790 1.19101 0.91039 0.83844 1.42254 0.91246 1.42571 1.05983 0.99512 1.87258 1.20466 0.91382 0.87115 0.91374 1.21839 0.92574 0.99638 0.86454 1.45765 1.14158 1.70389 1.04948 1.20267 0.88767 0.77275 0.84083 1.90672 1.18159 1.48808 1.84994 1.21795 0.98992 1.04886 0.92154 1.21034 0.94859 0.84927 0.90954 0.88964 1.89269 1.88603 1.27254 1.20580 1.21776 0.96130 0.98744 0.82310 1.21126 0.98440 0.98074 0.95418 1.20382 0.96171 0.99030 0.95955 1.21133 0.98233 0.94808 0.99411 1.21164 0.99699 0.99067 0.93451 1.20528 0.94915 0.97647 0.97735 1.21093 0.97807 0.96396 0.96968 1.22829 0.97347 1.00359 0.96625 1.22398 0.98698 0.97052 0.97293 1.22303 0.99480 0.97666 0.96404 1.22414 0.99699 0.96398 0.97760 0.93607 0.78145 0.92025 0.92876 0.76165 0.88338 0.87466 0.88733 0.90620 0.85835 0.85587 0.85406 0.85321 0.92917 0.90276 0.91428 0.92759 0.92402 0.92295 0.91386 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.29 13.07 55.49 0.73 -25.57 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 21.84 29.55 -169.99 -5.02 16.82 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -5.89 8.38 -15.06 -0.13 -6.02 16 8 H 0.07 1.79 7.21 -52.49 -0.38 1.41 16 9 N -0.71 -15.82 4.63 -46.20 -0.21 -16.03 16 10 C 0.19 3.44 0.68 -130.70 -0.09 3.35 16 11 C 0.12 2.28 4.02 -4.05 -0.02 2.26 16 12 N -0.70 -12.55 5.09 -60.30 -0.31 -12.86 16 13 C 0.51 9.17 7.74 -10.99 -0.09 9.09 16 14 O -0.55 -11.63 15.54 -5.14 -0.08 -11.71 16 15 C -0.14 -1.96 5.36 -27.89 -0.15 -2.11 16 16 C 0.14 1.99 2.84 -27.70 -0.08 1.91 16 17 H 0.09 1.40 7.95 -51.93 -0.41 0.99 16 18 O -0.34 -5.15 10.83 -45.93 -0.50 -5.65 16 19 C 0.09 0.98 7.63 36.19 0.28 1.26 16 20 C -0.13 -1.46 6.32 -104.40 -0.66 -2.12 16 21 C -0.10 -0.90 10.04 -39.66 -0.40 -1.30 16 22 C -0.12 -1.01 10.05 -39.55 -0.40 -1.41 16 23 C -0.12 -1.06 10.05 -39.55 -0.40 -1.46 16 24 C -0.09 -0.97 9.80 -39.66 -0.39 -1.36 16 25 C -0.12 -1.50 5.73 -104.40 -0.60 -2.09 16 26 C -0.13 -2.29 5.93 -25.02 -0.15 -2.44 16 27 C -0.12 -1.77 6.91 -24.69 -0.17 -1.95 16 28 C -0.12 -1.68 6.83 -25.07 -0.17 -1.85 16 29 C -0.12 -1.95 5.93 -25.61 -0.15 -2.10 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.38 9.14 7.28 -40.82 -0.30 8.84 16 32 H 0.06 1.32 7.57 -51.92 -0.39 0.92 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.40 7.00 8.00 -40.82 -0.33 6.67 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.11 1.37 7.88 -51.93 -0.41 0.96 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.13 1.25 7.90 -52.49 -0.41 0.84 16 43 H 0.05 0.85 7.85 -51.93 -0.41 0.44 16 44 H 0.08 1.57 7.00 -51.93 -0.36 1.20 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.07 1.09 7.44 -51.93 -0.39 0.71 16 50 H 0.06 0.91 7.54 -51.93 -0.39 0.52 16 LS Contribution 401.01 15.07 6.04 6.04 Total: -1.00 -31.05 401.01 -11.17 -42.21 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -7.97 Total: 15.42 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -3.85 Total: -8.67 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.20 Total: -54.46 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.58 Total: -17.37 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.05 -11.17 -42.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666804398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.869 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds