Wall clock time and date at job start Wed Apr 1 2020 02:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99810 * 2 1 4 4 H 1.48491 * 109.47339 * 270.00401 * 3 2 1 5 5 H 1.48509 * 109.46953 * 30.00337 * 3 2 1 6 6 H 1.48497 * 109.47057 * 150.00121 * 3 2 1 7 7 C 1.38811 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00145 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99964 * 174.58556 * 9 7 2 11 11 C 1.52997 * 110.01453 * 299.96666 * 10 9 7 12 12 N 1.46492 * 109.47464 * 303.76352 * 11 10 9 13 13 C 1.34783 * 120.00410 * 184.98191 * 12 11 10 14 14 O 1.21280 * 119.99747 * 0.02562 * 13 12 11 15 15 C 1.50692 * 120.00082 * 179.97438 * 13 12 11 16 16 C 1.52998 * 109.47146 * 179.97438 * 15 13 12 17 17 H 1.09002 * 110.13099 * 305.70330 * 16 15 13 18 18 O 1.43941 * 110.15251 * 67.39902 * 16 15 13 19 19 C 1.44043 * 104.90171 * 147.51639 * 18 16 15 20 20 C 1.51079 * 105.98963 * 331.64398 * 19 18 16 21 21 C 1.37971 * 132.68427 * 197.63747 * 20 19 18 22 22 C 1.38296 * 119.91790 * 180.02562 * 21 20 19 23 23 C 1.38260 * 120.04247 * 0.02562 * 22 21 20 24 24 C 1.38295 * 120.04308 * 0.02562 * 23 22 21 25 25 C 1.37969 * 119.91786 * 359.97260 * 24 23 22 26 26 C 1.54271 * 110.03133 * 61.35420 * 10 9 7 27 27 C 1.54972 * 104.15413 * 95.75674 * 26 10 9 28 28 C 1.54888 * 102.77886 * 37.88984 * 27 26 10 29 29 C 1.53874 * 110.03460 * 178.57428 * 10 9 7 30 30 H 0.96995 * 119.99997 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99867 * 354.58261 * 9 7 2 32 32 H 1.09007 * 109.47322 * 63.76484 * 11 10 9 33 33 H 1.09003 * 109.47348 * 183.75795 * 11 10 9 34 34 H 0.97003 * 119.99902 * 4.98766 * 12 11 10 35 35 H 1.09005 * 109.47345 * 300.00171 * 15 13 12 36 36 H 1.09003 * 109.47146 * 60.00028 * 15 13 12 37 37 H 1.08994 * 110.17657 * 212.49093 * 19 18 16 38 38 H 1.09004 * 110.15167 * 90.78867 * 19 18 16 39 39 H 1.08000 * 120.04006 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.97992 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.98032 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.04391 * 180.02562 * 24 23 22 43 43 H 1.08995 * 110.48709 * 214.40107 * 26 10 9 44 44 H 1.09000 * 110.48676 * 337.05365 * 26 10 9 45 45 H 1.08997 * 110.71783 * 279.57099 * 27 26 10 46 46 H 1.09004 * 110.75941 * 156.22061 * 27 26 10 47 47 H 1.08998 * 110.48284 * 203.40520 * 28 27 26 48 48 H 1.09000 * 110.48962 * 80.76131 * 28 27 26 49 49 H 1.09001 * 110.03010 * 359.95557 * 29 10 9 50 50 H 1.09002 * 110.02791 * 121.33237 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0533 -3.6538 -0.1219 11 6 2.8326 -3.6869 -1.4381 12 7 1.9118 -3.4686 -2.5564 13 6 2.3593 -3.5560 -3.8248 14 8 3.5242 -3.8158 -4.0403 15 6 1.4120 -3.3321 -4.9751 16 6 2.1681 -3.4874 -6.2961 17 1 3.0375 -2.8301 -6.3103 18 8 2.5778 -4.8556 -6.4751 19 6 2.5352 -5.0719 -7.8985 20 6 1.4792 -4.1318 -8.4309 21 6 0.7757 -4.0905 -9.6171 22 6 -0.1517 -3.0879 -9.8345 23 6 -0.3733 -2.1278 -8.8646 24 6 0.3325 -2.1685 -7.6760 25 6 1.2577 -3.1687 -7.4591 26 6 3.0196 -3.8231 1.0687 27 6 2.2267 -4.6891 2.0802 28 6 1.4717 -5.6826 1.1626 29 6 1.0693 -4.8353 -0.0621 30 1 -0.4850 0.8400 0.0004 31 1 0.3589 -2.3899 0.0773 32 1 3.5893 -2.9023 -1.4321 33 1 3.3163 -4.6573 -1.5498 34 1 0.9801 -3.2611 -2.3841 35 1 0.6054 -4.0639 -4.9294 36 1 0.9947 -2.3271 -4.9118 37 1 2.2615 -6.1047 -8.1138 38 1 3.5032 -4.8399 -8.3428 39 1 0.9491 -4.8402 -10.3748 40 1 -0.7026 -3.0544 -10.7628 41 1 -1.0975 -1.3451 -9.0356 42 1 0.1591 -1.4188 -6.9183 43 1 3.9265 -4.3391 0.7536 44 1 3.2626 -2.8536 1.5036 45 1 1.5252 -4.0761 2.6459 46 1 2.9044 -5.2197 2.7490 47 1 0.5860 -6.0694 1.6665 48 1 2.1283 -6.4992 0.8624 49 1 0.0504 -4.4669 0.0571 50 1 1.1463 -5.4317 -0.9713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666804398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:01 Heat of formation + Delta-G solvation = -63.179632 kcal Electronic energy + Delta-G solvation = -30373.646426 eV Core-core repulsion = 26364.797361 eV Total energy + Delta-G solvation = -4008.849065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.87939 -40.71148 -39.50596 -38.24293 -35.53771 -35.06098 -33.75303 -32.41264 -32.25082 -31.16327 -29.57087 -29.36545 -27.31503 -26.08556 -25.26485 -24.51361 -22.56071 -22.19993 -21.57856 -20.93874 -20.06209 -18.92038 -18.40207 -17.71744 -17.41337 -17.13029 -16.98161 -16.54356 -16.26972 -16.07229 -15.94623 -15.71362 -15.25726 -15.17625 -14.80381 -14.59895 -14.36547 -14.03154 -13.89702 -13.74328 -13.53066 -13.30263 -13.20888 -13.07346 -12.92073 -12.69956 -12.46636 -12.33560 -12.21976 -12.15749 -11.88411 -11.82305 -11.71645 -11.57119 -11.41005 -11.32631 -11.05341 -10.95338 -10.75452 -9.88051 -9.85926 -9.56333 -8.94569 -7.89984 -5.15637 0.24645 0.37238 1.44558 1.47203 1.52883 1.73800 2.34723 2.57575 2.72401 2.86061 3.19398 3.41011 3.56874 3.77420 3.79438 3.85030 3.91364 4.00714 4.04657 4.16576 4.20361 4.22224 4.40420 4.42494 4.45537 4.50967 4.59364 4.61572 4.66649 4.76345 4.78252 4.78765 4.87226 4.87823 4.98307 5.05630 5.07523 5.14427 5.18612 5.27207 5.39075 5.40002 5.42930 5.50154 5.52703 5.58482 5.63138 5.69784 5.77395 5.98947 6.33702 6.70022 7.35688 7.41216 8.13868 8.39529 9.32266 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010595 B = 0.003018 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.059855 B = 9276.597547 C =10953.872111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.062 4.062 3 Si 0.949 3.051 4 H -0.295 1.295 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.215 4.215 8 H 0.062 0.938 9 N -0.713 5.713 10 C 0.185 3.815 11 C 0.128 3.872 12 N -0.700 5.700 13 C 0.506 3.494 14 O -0.584 6.584 15 C -0.129 4.129 16 C 0.142 3.858 17 H 0.069 0.931 18 O -0.369 6.369 19 C 0.081 3.919 20 C -0.142 4.142 21 C -0.098 4.098 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.103 4.103 25 C -0.143 4.143 26 C -0.132 4.132 27 C -0.112 4.112 28 C -0.113 4.113 29 C -0.119 4.119 30 H 0.248 0.752 31 H 0.376 0.624 32 H 0.029 0.971 33 H 0.061 0.939 34 H 0.407 0.593 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.150 0.850 40 H 0.158 0.842 41 H 0.151 0.849 42 H 0.132 0.868 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.050 0.950 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.063 0.937 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.314 -11.562 -16.001 19.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.255 4.255 3 Si 0.780 3.220 4 H -0.223 1.223 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.347 4.347 8 H 0.080 0.920 9 N -0.354 5.354 10 C 0.095 3.905 11 C 0.002 3.998 12 N -0.350 5.350 13 C 0.294 3.706 14 O -0.465 6.465 15 C -0.169 4.169 16 C 0.084 3.916 17 H 0.087 0.913 18 O -0.288 6.288 19 C 0.006 3.994 20 C -0.142 4.142 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.137 4.137 24 C -0.121 4.121 25 C -0.144 4.144 26 C -0.172 4.172 27 C -0.150 4.150 28 C -0.150 4.150 29 C -0.157 4.157 30 H 0.057 0.943 31 H 0.210 0.790 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.242 0.758 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.100 0.900 39 H 0.168 0.832 40 H 0.175 0.825 41 H 0.169 0.831 42 H 0.150 0.850 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.296 -11.776 -15.958 19.875 hybrid contribution -0.057 1.788 0.276 1.810 sum -1.353 -9.988 -15.682 18.642 Atomic orbital electron populations 1.69753 1.05818 1.25493 1.59954 1.25195 0.96065 0.99729 1.04472 0.85504 0.77905 0.81549 0.77001 1.22256 1.22325 1.20406 1.19231 0.90795 0.85041 1.39660 0.91987 1.42623 1.05630 1.00108 1.87037 1.20696 0.92068 0.86526 0.91247 1.21708 0.92196 0.98813 0.87106 1.45786 1.14097 1.70198 1.04932 1.20931 0.88847 0.76124 0.84734 1.90647 1.19916 1.50410 1.85503 1.21790 0.98397 1.06007 0.90659 1.20890 0.94574 0.84408 0.91768 0.91342 1.89214 1.88885 1.27605 1.23067 1.21973 0.96832 1.00050 0.80587 1.21236 0.98907 0.97847 0.96186 1.20743 0.95504 0.99741 0.95601 1.21560 0.97556 0.93751 1.00236 1.21503 0.99581 0.99800 0.92784 1.20718 0.95073 0.97481 0.98823 1.20975 0.98852 0.97922 0.96627 1.22791 0.98124 0.99631 0.96690 1.22363 0.98575 0.96886 0.97128 1.22295 1.00394 0.97333 0.95001 1.22358 0.98486 0.95446 0.99395 0.94275 0.79004 0.95237 0.92052 0.75755 0.86719 0.86226 0.86805 0.90042 0.83217 0.82474 0.83124 0.85035 0.91462 0.93246 0.93072 0.90391 0.90627 0.90432 0.91835 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.98 13.07 21.65 0.28 -54.70 16 2 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 3 Si 0.95 45.68 29.55 68.60 2.03 47.71 16 4 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.22 -11.16 8.38 84.03 0.70 -10.45 16 8 H 0.06 3.28 7.21 -2.91 -0.02 3.26 16 9 N -0.71 -32.10 4.63 -300.07 -1.39 -33.49 16 10 C 0.19 6.71 0.68 4.33 0.00 6.72 16 11 C 0.13 4.87 4.02 86.38 0.35 5.22 16 12 N -0.70 -25.30 5.09 -463.07 -2.36 -27.66 16 13 C 0.51 18.59 7.74 87.65 0.68 19.26 16 14 O -0.58 -25.63 15.54 7.20 0.11 -25.52 16 15 C -0.13 -3.69 5.36 29.85 0.16 -3.53 16 16 C 0.14 4.13 2.84 29.97 0.09 4.21 16 17 H 0.07 2.24 7.95 -2.39 -0.02 2.22 16 18 O -0.37 -11.43 10.83 -138.75 -1.50 -12.93 16 19 C 0.08 1.80 7.63 71.36 0.54 2.35 16 20 C -0.14 -3.01 6.32 -19.72 -0.12 -3.14 16 21 C -0.10 -1.55 10.04 22.22 0.22 -1.32 16 22 C -0.11 -1.57 10.05 22.29 0.22 -1.34 16 23 C -0.12 -1.89 10.05 22.29 0.22 -1.67 16 24 C -0.10 -2.12 9.80 22.22 0.22 -1.90 16 25 C -0.14 -3.46 5.73 -19.72 -0.11 -3.58 16 26 C -0.13 -4.54 5.93 31.70 0.19 -4.35 16 27 C -0.11 -3.19 6.91 31.91 0.22 -2.97 16 28 C -0.11 -2.81 6.83 31.67 0.22 -2.59 16 29 C -0.12 -3.52 5.93 31.32 0.19 -3.33 16 30 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.38 18.12 7.28 -92.71 -0.67 17.44 16 32 H 0.03 1.30 7.57 -2.38 -0.02 1.28 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.41 14.17 8.00 -92.71 -0.74 13.43 16 35 H 0.11 2.90 8.14 -2.38 -0.02 2.88 16 36 H 0.12 3.08 7.88 -2.39 -0.02 3.06 16 37 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 41 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 42 H 0.13 2.50 7.90 -2.91 -0.02 2.47 16 43 H 0.07 2.09 7.85 -2.39 -0.02 2.08 16 44 H 0.05 1.98 7.00 -2.39 -0.02 1.96 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 47 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.06 1.96 7.44 -2.39 -0.02 1.94 16 50 H 0.07 1.99 7.54 -2.39 -0.02 1.97 16 Total: -1.00 -68.53 401.01 1.16 -67.37 By element: Atomic # 1 Polarization: 45.02 SS G_CDS: -0.46 Total: 44.56 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 4.45 Total: -5.33 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -3.46 Total: -115.85 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -1.39 Total: -38.45 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -68.53 1.16 -67.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666804398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.186 kcal (2) G-P(sol) polarization free energy of solvation -68.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds