Wall clock time and date at job start Wed Apr 1 2020 03:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00182 * 2 1 4 4 H 1.48503 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47109 * 300.00025 * 3 2 1 6 6 H 1.48503 * 109.47233 * 60.00180 * 3 2 1 7 7 C 1.38815 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00145 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99892 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00103 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47337 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.55225 * 59.87631 * 11 10 9 13 13 C 1.53296 * 109.51424 * 180.02562 * 11 10 9 14 14 N 1.47148 * 108.38343 * 172.22949 * 13 11 10 15 15 C 1.34777 * 120.98121 * 129.48933 * 14 13 11 16 16 O 1.21280 * 120.00266 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00268 * 179.97438 * 15 14 13 18 18 C 1.50696 * 109.47317 * 180.02562 * 17 15 14 19 19 C 1.30993 * 120.00177 * 125.00122 * 18 17 15 20 20 C 1.50702 * 120.00122 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47143 * 124.99989 * 20 19 18 22 22 C 1.38241 * 119.99489 * 269.72890 * 21 20 19 23 23 C 1.38245 * 119.99660 * 179.81068 * 22 21 20 24 24 C 1.38240 * 119.99698 * 0.39526 * 23 22 21 25 25 C 1.38236 * 120.00228 * 359.85747 * 24 23 22 26 26 C 1.38235 * 120.00039 * 359.95472 * 25 24 23 27 27 C 1.47151 * 118.03873 * 309.46325 * 14 13 11 28 28 C 1.53294 * 108.38428 * 50.53625 * 27 14 13 29 29 O 1.42957 * 109.51438 * 299.75029 * 11 10 9 30 30 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00142 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.46513 * 60.00537 * 10 9 7 33 33 H 1.08996 * 109.47299 * 300.00768 * 10 9 7 34 34 H 1.08996 * 109.67842 * 291.95153 * 13 11 10 35 35 H 1.08999 * 109.67990 * 52.46694 * 13 11 10 36 36 H 1.09001 * 109.46914 * 300.00360 * 17 15 14 37 37 H 1.09001 * 109.46868 * 59.99487 * 17 15 14 38 38 H 1.08002 * 119.99764 * 304.99525 * 18 17 15 39 39 H 1.08002 * 120.00058 * 359.97438 * 19 18 17 40 40 H 1.09000 * 109.47193 * 244.99996 * 20 19 18 41 41 H 1.09001 * 109.47115 * 5.00083 * 20 19 18 42 42 H 1.07993 * 120.00585 * 359.97438 * 22 21 20 43 43 H 1.07992 * 119.99957 * 180.23010 * 23 22 21 44 44 H 1.07992 * 119.99730 * 179.83494 * 24 23 22 45 45 H 1.08001 * 120.00008 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00104 * 180.02562 * 26 25 24 47 47 H 1.08999 * 109.68629 * 170.26248 * 27 14 13 48 48 H 1.08998 * 109.67969 * 290.77799 * 27 14 13 49 49 H 1.09005 * 109.50976 * 67.61995 * 28 27 14 50 50 H 1.08996 * 109.51690 * 187.77283 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.4345 -4.7614 -0.8903 13 6 1.8292 -6.1479 -0.0026 14 7 0.8622 -7.2409 0.1858 15 6 0.8489 -8.3056 -0.6405 16 8 1.6414 -8.3726 -1.5560 17 6 -0.1508 -9.4129 -0.4268 18 6 0.0443 -10.4755 -1.4773 19 6 0.2449 -11.7200 -1.1208 20 6 0.4395 -12.7828 -2.1714 21 6 1.7357 -13.5085 -1.9177 22 6 2.9062 -13.0556 -2.4972 23 6 4.0959 -13.7190 -2.2614 24 6 4.1136 -14.8400 -1.4527 25 6 2.9422 -15.2959 -0.8774 26 6 1.7532 -14.6303 -1.1101 27 6 -0.0895 -7.1375 1.3034 28 6 -0.7615 -5.7611 1.2403 29 8 0.2456 -4.7489 1.1682 30 1 -0.4849 0.8401 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.6852 -3.7150 0.8879 33 1 2.6840 -3.7142 -0.8921 34 1 2.3448 -6.2740 -0.9546 35 1 2.5542 -6.1540 0.8112 36 1 -0.0048 -9.8484 0.5617 37 1 -1.1608 -9.0097 -0.5004 38 1 0.0187 -10.2111 -2.5241 39 1 0.2708 -11.9843 -0.0739 40 1 -0.3878 -13.4912 -2.1291 41 1 0.4701 -12.3181 -3.1569 42 1 2.8917 -12.1820 -3.1320 43 1 5.0109 -13.3630 -2.7110 44 1 5.0425 -15.3598 -1.2706 45 1 2.9560 -16.1720 -0.2460 46 1 0.8381 -14.9862 -0.6604 47 1 -0.8444 -7.9189 1.2163 48 1 0.4418 -7.2442 2.2491 49 1 -1.3971 -5.7064 0.3564 50 1 -1.3663 -5.6099 2.1344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673284230.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:12 Heat of formation + Delta-G solvation = -26.205906 kcal Electronic energy + Delta-G solvation = -28632.831901 eV Core-core repulsion = 24625.586138 eV Total energy + Delta-G solvation = -4007.245764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.41231 -39.59505 -38.41416 -35.91983 -35.05813 -34.37140 -32.84248 -32.13423 -31.18082 -30.26544 -29.38382 -27.96043 -26.13649 -24.81712 -23.49570 -22.87750 -22.46063 -21.54622 -20.84660 -19.97059 -19.13746 -17.41154 -17.12785 -17.01104 -16.52696 -16.01690 -15.82214 -15.48893 -15.45209 -15.10346 -14.71015 -14.54095 -14.27858 -13.97697 -13.81038 -13.70361 -13.53680 -13.29721 -13.14521 -12.84511 -12.68780 -12.52042 -12.27074 -12.16074 -12.03089 -11.60641 -11.56480 -11.35254 -11.23779 -11.00995 -10.88647 -10.80066 -10.46213 -10.08522 -9.93015 -9.88194 -9.67590 -9.32406 -9.21668 -8.98328 -8.85790 -8.54485 -6.87560 -5.71726 -3.00219 1.02775 1.10492 1.88975 2.49907 2.83428 3.46512 3.48482 3.51857 3.54305 3.93832 4.34749 4.40183 4.53699 4.55041 4.59516 4.71493 4.73017 4.76906 4.84093 4.88078 4.98112 5.04946 5.08077 5.16588 5.19068 5.21123 5.30644 5.33611 5.38874 5.49634 5.53498 5.61172 5.65680 5.69904 5.73332 5.75056 5.88103 5.96372 6.15278 6.22233 6.27710 6.28403 6.31732 6.35742 6.49314 6.56997 6.70484 6.71377 7.23707 7.45866 7.73797 8.03332 8.46444 9.58323 10.15578 10.51743 11.51153 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021718 B = 0.001653 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.938275 B =16936.719923 C =17661.362941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.074 3.926 12 H 0.063 0.937 13 C 0.085 3.915 14 N -0.616 5.616 15 C 0.518 3.482 16 O -0.536 6.536 17 C -0.111 4.111 18 C -0.129 4.129 19 C -0.152 4.152 20 C -0.051 4.051 21 C -0.076 4.076 22 C -0.111 4.111 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.119 4.119 27 C 0.071 3.929 28 C 0.045 3.955 29 O -0.356 6.356 30 H 0.254 0.746 31 H 0.388 0.612 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.054 0.946 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -32.518 -0.097 32.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.081 0.919 13 C -0.038 4.038 14 N -0.350 5.350 15 C 0.306 3.694 16 O -0.413 6.413 17 C -0.150 4.150 18 C -0.147 4.147 19 C -0.170 4.170 20 C -0.088 4.088 21 C -0.076 4.076 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.145 4.145 25 C -0.139 4.139 26 C -0.137 4.137 27 C -0.052 4.052 28 C -0.033 4.033 29 O -0.274 6.274 30 H 0.064 0.936 31 H 0.222 0.778 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.109 0.891 48 H 0.097 0.903 49 H 0.072 0.928 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.543 -32.294 -0.451 32.302 hybrid contribution 0.074 0.759 0.039 0.763 sum -0.468 -31.536 -0.412 31.542 Atomic orbital electron populations 1.69689 1.05110 1.25414 1.57814 1.24743 0.95531 0.97667 1.03083 0.86105 0.78775 0.84104 0.77133 1.20553 1.21913 1.21891 1.19285 0.91066 0.84098 1.42532 0.91080 1.42214 1.06056 0.99448 1.89304 1.20629 0.92379 0.84722 0.98788 1.22796 0.93010 0.94275 0.88389 0.91940 1.22332 0.91625 0.85663 1.04148 1.48204 1.35575 1.20944 1.30297 1.20567 0.84919 0.82437 0.81460 1.90701 1.40880 1.78361 1.31329 1.20783 0.99590 0.94535 1.00131 1.22422 0.99997 0.92970 0.99346 1.22643 1.01021 0.94143 0.99158 1.19679 0.94398 0.96473 0.98217 1.19801 0.95091 0.95389 0.97367 1.21137 0.92218 0.99651 0.99906 1.21190 0.98058 0.95776 0.98561 1.21161 0.98212 0.97068 0.98012 1.21133 0.92803 0.99986 1.00000 1.21048 0.98176 0.95697 0.98793 1.22531 0.92932 0.99668 0.90081 1.22919 0.90901 0.86636 1.02834 1.88172 1.46207 1.50588 1.42468 0.93638 0.77843 0.95361 0.94682 0.88085 0.90500 0.88559 0.87878 0.86516 0.87308 0.90079 0.90369 0.85901 0.86052 0.86238 0.86194 0.86149 0.89101 0.90328 0.92820 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.73 -19.10 5.50 -59.91 -0.33 -19.43 16 10 C 0.16 3.39 5.95 -4.04 -0.02 3.37 16 11 C 0.07 1.28 2.86 -26.58 -0.08 1.20 16 12 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 13 C 0.09 1.24 5.93 -3.53 -0.02 1.22 16 14 N -0.62 -7.68 3.02 -172.28 -0.52 -8.21 16 15 C 0.52 6.58 7.70 -10.98 -0.08 6.49 16 16 O -0.54 -8.83 15.50 5.56 0.09 -8.74 16 17 C -0.11 -0.93 4.52 -29.04 -0.13 -1.07 16 18 C -0.13 -1.16 8.36 -36.03 -0.30 -1.46 16 19 C -0.15 -1.19 9.10 -36.02 -0.33 -1.52 16 20 C -0.05 -0.36 5.79 -29.03 -0.17 -0.53 16 21 C -0.08 -0.65 5.12 -104.62 -0.54 -1.18 16 22 C -0.11 -1.02 9.70 -39.58 -0.38 -1.40 16 23 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 24 C -0.13 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 26 C -0.12 -0.91 9.70 -39.58 -0.38 -1.29 16 27 C 0.07 0.68 6.54 -3.53 -0.02 0.66 16 28 C 0.05 0.54 6.99 37.31 0.26 0.80 16 29 O -0.36 -6.21 10.14 -35.23 -0.36 -6.57 16 30 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.39 10.83 7.55 -40.82 -0.31 10.52 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 1.55 7.08 -51.93 -0.37 1.18 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.10 0.64 7.67 -51.93 -0.40 0.24 16 37 H 0.10 0.67 7.66 -51.93 -0.40 0.28 16 38 H 0.12 1.14 7.84 -52.49 -0.41 0.72 16 39 H 0.11 0.78 7.84 -52.49 -0.41 0.37 16 40 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 41 H 0.08 0.56 7.73 -51.93 -0.40 0.16 16 42 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 45 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 46 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.09 0.57 6.05 -51.93 -0.31 0.25 16 48 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 412.92 15.07 6.22 6.22 Total: -1.00 -35.40 412.92 -10.89 -46.28 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.05 Total: 7.02 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -3.64 Total: -6.30 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.12 Total: -55.68 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.27 Total: -15.31 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.40 -10.89 -46.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673284230.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.078 kcal (2) G-P(sol) polarization free energy of solvation -35.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds