Wall clock time and date at job start Wed Apr 1 2020 03:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00182 * 2 1 4 4 H 1.48503 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47109 * 300.00025 * 3 2 1 6 6 H 1.48503 * 109.47233 * 60.00180 * 3 2 1 7 7 C 1.38815 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00145 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99892 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00103 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47337 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.55225 * 59.87631 * 11 10 9 13 13 C 1.53296 * 109.51424 * 180.02562 * 11 10 9 14 14 N 1.47148 * 108.38343 * 172.22949 * 13 11 10 15 15 C 1.34777 * 120.98121 * 129.48933 * 14 13 11 16 16 O 1.21280 * 120.00266 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00268 * 179.97438 * 15 14 13 18 18 C 1.50696 * 109.47317 * 180.02562 * 17 15 14 19 19 C 1.30993 * 120.00177 * 125.00122 * 18 17 15 20 20 C 1.50702 * 120.00122 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47143 * 124.99989 * 20 19 18 22 22 C 1.38241 * 119.99489 * 269.72890 * 21 20 19 23 23 C 1.38245 * 119.99660 * 179.81068 * 22 21 20 24 24 C 1.38240 * 119.99698 * 0.39526 * 23 22 21 25 25 C 1.38236 * 120.00228 * 359.85747 * 24 23 22 26 26 C 1.38235 * 120.00039 * 359.95472 * 25 24 23 27 27 C 1.47151 * 118.03873 * 309.46325 * 14 13 11 28 28 C 1.53294 * 108.38428 * 50.53625 * 27 14 13 29 29 O 1.42957 * 109.51438 * 299.75029 * 11 10 9 30 30 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00142 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.46513 * 60.00537 * 10 9 7 33 33 H 1.08996 * 109.47299 * 300.00768 * 10 9 7 34 34 H 1.08996 * 109.67842 * 291.95153 * 13 11 10 35 35 H 1.08999 * 109.67990 * 52.46694 * 13 11 10 36 36 H 1.09001 * 109.46914 * 300.00360 * 17 15 14 37 37 H 1.09001 * 109.46868 * 59.99487 * 17 15 14 38 38 H 1.08002 * 119.99764 * 304.99525 * 18 17 15 39 39 H 1.08002 * 120.00058 * 359.97438 * 19 18 17 40 40 H 1.09000 * 109.47193 * 244.99996 * 20 19 18 41 41 H 1.09001 * 109.47115 * 5.00083 * 20 19 18 42 42 H 1.07993 * 120.00585 * 359.97438 * 22 21 20 43 43 H 1.07992 * 119.99957 * 180.23010 * 23 22 21 44 44 H 1.07992 * 119.99730 * 179.83494 * 24 23 22 45 45 H 1.08001 * 120.00008 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00104 * 180.02562 * 26 25 24 47 47 H 1.08999 * 109.68629 * 170.26248 * 27 14 13 48 48 H 1.08998 * 109.67969 * 290.77799 * 27 14 13 49 49 H 1.09005 * 109.50976 * 67.61995 * 28 27 14 50 50 H 1.08996 * 109.51690 * 187.77283 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.4345 -4.7614 -0.8903 13 6 1.8292 -6.1479 -0.0026 14 7 0.8622 -7.2409 0.1858 15 6 0.8489 -8.3056 -0.6405 16 8 1.6414 -8.3726 -1.5560 17 6 -0.1508 -9.4129 -0.4268 18 6 0.0443 -10.4755 -1.4773 19 6 0.2449 -11.7200 -1.1208 20 6 0.4395 -12.7828 -2.1714 21 6 1.7357 -13.5085 -1.9177 22 6 2.9062 -13.0556 -2.4972 23 6 4.0959 -13.7190 -2.2614 24 6 4.1136 -14.8400 -1.4527 25 6 2.9422 -15.2959 -0.8774 26 6 1.7532 -14.6303 -1.1101 27 6 -0.0895 -7.1375 1.3034 28 6 -0.7615 -5.7611 1.2403 29 8 0.2456 -4.7489 1.1682 30 1 -0.4849 0.8401 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.6852 -3.7150 0.8879 33 1 2.6840 -3.7142 -0.8921 34 1 2.3448 -6.2740 -0.9546 35 1 2.5542 -6.1540 0.8112 36 1 -0.0048 -9.8484 0.5617 37 1 -1.1608 -9.0097 -0.5004 38 1 0.0187 -10.2111 -2.5241 39 1 0.2708 -11.9843 -0.0739 40 1 -0.3878 -13.4912 -2.1291 41 1 0.4701 -12.3181 -3.1569 42 1 2.8917 -12.1820 -3.1320 43 1 5.0109 -13.3630 -2.7110 44 1 5.0425 -15.3598 -1.2706 45 1 2.9560 -16.1720 -0.2460 46 1 0.8381 -14.9862 -0.6604 47 1 -0.8444 -7.9189 1.2163 48 1 0.4418 -7.2442 2.2491 49 1 -1.3971 -5.7064 0.3564 50 1 -1.3663 -5.6099 2.1344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673284230.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:11 Heat of formation + Delta-G solvation = -47.616353 kcal Electronic energy + Delta-G solvation = -28633.760328 eV Core-core repulsion = 24625.586138 eV Total energy + Delta-G solvation = -4008.174191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.44964 -40.17650 -39.56854 -36.67684 -36.56463 -35.73480 -34.00656 -33.33493 -31.90442 -31.75434 -30.13378 -29.13685 -27.39559 -25.91788 -24.83369 -23.90639 -23.45609 -22.42990 -22.03440 -20.66165 -20.03362 -19.24939 -18.23480 -17.78609 -17.63719 -17.10680 -16.78070 -16.64981 -16.10215 -16.05862 -16.00753 -15.84598 -15.34017 -15.04009 -14.92004 -14.69231 -14.44613 -14.27405 -14.16958 -14.10299 -13.93372 -13.53926 -13.37184 -13.01685 -12.83676 -12.79910 -12.74836 -12.61931 -12.24559 -12.18118 -12.02690 -11.93103 -11.88192 -11.79835 -11.62426 -11.20039 -10.98080 -10.91737 -9.97035 -9.81277 -9.62568 -9.57739 -9.01891 -7.94983 -5.24579 0.43628 0.50707 1.23500 1.47305 1.48817 1.54691 1.59077 1.90783 2.55828 2.76064 2.89255 3.38818 3.49435 3.60708 3.77603 3.89571 3.95108 3.98394 4.01243 4.07614 4.16012 4.17977 4.22258 4.31166 4.35393 4.40021 4.44137 4.49309 4.52693 4.63381 4.64823 4.65659 4.73111 4.79140 4.85901 4.88730 4.93764 4.96984 5.07330 5.16850 5.18506 5.27985 5.47731 5.58040 5.63940 5.68135 5.72885 5.88739 6.14713 6.23125 6.27101 6.31665 7.07187 7.32755 8.06289 8.31705 9.28870 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021718 B = 0.001653 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.938275 B =16936.719923 C =17661.362941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.978 3.022 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.739 5.739 10 C 0.159 3.841 11 C 0.090 3.910 12 H 0.047 0.953 13 C 0.095 3.905 14 N -0.617 5.617 15 C 0.512 3.488 16 O -0.583 6.583 17 C -0.101 4.101 18 C -0.149 4.149 19 C -0.139 4.139 20 C -0.051 4.051 21 C -0.086 4.086 22 C -0.135 4.135 23 C -0.133 4.133 24 C -0.136 4.136 25 C -0.126 4.126 26 C -0.124 4.124 27 C 0.075 3.925 28 C 0.035 3.965 29 O -0.389 6.389 30 H 0.251 0.749 31 H 0.376 0.624 32 H 0.030 0.970 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.128 0.872 44 H 0.137 0.863 45 H 0.143 0.857 46 H 0.142 0.858 47 H 0.134 0.866 48 H 0.091 0.909 49 H 0.052 0.948 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.521 -34.679 1.532 34.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.096 0.904 9 N -0.382 5.382 10 C 0.032 3.968 11 C 0.031 3.969 12 H 0.065 0.935 13 C -0.029 4.029 14 N -0.351 5.351 15 C 0.302 3.698 16 O -0.463 6.463 17 C -0.140 4.140 18 C -0.168 4.168 19 C -0.157 4.157 20 C -0.088 4.088 21 C -0.086 4.086 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.153 4.153 25 C -0.144 4.144 26 C -0.142 4.142 27 C -0.046 4.046 28 C -0.042 4.042 29 O -0.308 6.308 30 H 0.060 0.940 31 H 0.207 0.793 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.117 0.883 39 H 0.141 0.859 40 H 0.119 0.881 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.146 0.854 44 H 0.155 0.845 45 H 0.161 0.839 46 H 0.160 0.840 47 H 0.152 0.848 48 H 0.109 0.891 49 H 0.070 0.930 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.913 -34.496 1.196 34.529 hybrid contribution 0.192 1.324 -0.463 1.415 sum -0.721 -33.172 0.733 33.188 Atomic orbital electron populations 1.69849 1.06695 1.26011 1.59373 1.25620 0.96468 1.01223 1.03527 0.85013 0.78183 0.79458 0.76712 1.18990 1.21918 1.21876 1.19715 0.91603 0.85265 1.41426 0.90445 1.42392 1.05702 1.00773 1.89328 1.20774 0.93144 0.84107 0.98763 1.22425 0.92331 0.94108 0.88083 0.93496 1.22021 0.91879 0.85284 1.03753 1.48323 1.35510 1.20157 1.31101 1.21423 0.84963 0.82996 0.80380 1.90683 1.42947 1.79386 1.33265 1.20832 0.99210 0.92697 1.01227 1.22396 1.01793 0.93730 0.98874 1.22789 0.99202 0.93774 0.99935 1.19720 0.94606 0.96708 0.97791 1.19966 0.95086 0.95963 0.97603 1.21249 0.93237 1.00009 1.00813 1.21395 0.98197 0.96371 0.99142 1.21453 0.99385 0.96829 0.97676 1.21487 0.92531 1.00529 0.99818 1.21345 0.99247 0.95200 0.98380 1.22725 0.93249 0.99241 0.89423 1.23265 0.90115 0.86892 1.03912 1.88103 1.47456 1.53173 1.42038 0.93988 0.79254 0.95213 0.94156 0.89389 0.89863 0.85703 0.85364 0.88299 0.85852 0.88118 0.91114 0.86909 0.85406 0.84475 0.83924 0.83985 0.84784 0.89116 0.92991 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 7 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.74 -39.78 5.50 -343.44 -1.89 -41.67 16 10 C 0.16 6.75 5.95 86.38 0.51 7.27 16 11 C 0.09 3.13 2.86 30.69 0.09 3.22 16 12 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 13 C 0.09 2.75 5.93 86.36 0.51 3.26 16 14 N -0.62 -14.46 3.02 -817.37 -2.47 -16.93 16 15 C 0.51 12.37 7.70 87.66 0.68 13.05 16 16 O -0.58 -19.51 15.50 -3.03 -0.05 -19.55 16 17 C -0.10 -1.41 4.52 29.10 0.13 -1.28 16 18 C -0.15 -2.48 8.36 25.65 0.21 -2.27 16 19 C -0.14 -1.92 9.10 25.65 0.23 -1.68 16 20 C -0.05 -0.68 5.79 29.10 0.17 -0.51 16 21 C -0.09 -1.38 5.12 -19.86 -0.10 -1.48 16 22 C -0.13 -2.54 9.70 22.27 0.22 -2.32 16 23 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 24 C -0.14 -1.93 10.05 22.27 0.22 -1.71 16 25 C -0.13 -1.60 10.05 22.27 0.22 -1.38 16 26 C -0.12 -1.63 9.70 22.27 0.22 -1.42 16 27 C 0.08 1.21 6.54 86.35 0.56 1.77 16 28 C 0.04 0.78 6.99 72.08 0.50 1.29 16 29 O -0.39 -13.46 10.14 -148.98 -1.51 -14.97 16 30 H 0.25 15.19 8.31 -92.71 -0.77 14.41 16 31 H 0.38 21.66 7.55 -92.71 -0.70 20.96 16 32 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 2.79 7.08 -2.39 -0.02 2.77 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.12 1.07 7.67 -2.39 -0.02 1.05 16 37 H 0.13 1.16 7.66 -2.39 -0.02 1.14 16 38 H 0.10 1.97 7.84 -2.91 -0.02 1.95 16 39 H 0.12 1.35 7.84 -2.91 -0.02 1.32 16 40 H 0.10 0.92 8.09 -2.39 -0.02 0.90 16 41 H 0.07 1.02 7.73 -2.39 -0.02 1.00 16 42 H 0.11 2.21 8.06 -2.91 -0.02 2.19 16 43 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 44 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 45 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 46 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 47 H 0.13 1.00 6.05 -2.39 -0.01 0.99 16 48 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 50 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -78.91 412.92 2.53 -76.38 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.22 Total: 32.01 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.91 Total: -3.85 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -4.07 Total: -119.23 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -1.56 Total: -34.53 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -78.91 2.53 -76.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673284230.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.764 kcal (2) G-P(sol) polarization free energy of solvation -78.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds