Wall clock time and date at job start Wed Apr 1 2020 03:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86808 * 119.99885 * 2 1 4 4 H 1.48492 * 109.46739 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46813 * 300.00069 * 3 2 1 6 6 H 1.48495 * 109.46923 * 59.99938 * 3 2 1 7 7 C 1.38806 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00301 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00278 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00332 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47107 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.50909 * 305.10051 * 11 10 9 13 13 C 1.53295 * 109.51227 * 185.00279 * 11 10 9 14 14 N 1.47148 * 108.38524 * 187.72475 * 13 11 10 15 15 C 1.34780 * 120.97846 * 230.51363 * 14 13 11 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 14 13 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 15 14 19 19 C 1.30999 * 120.00002 * 125.00209 * 18 17 15 20 20 C 1.50703 * 120.00002 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47036 * 124.99261 * 20 19 18 22 22 C 1.38228 * 120.00349 * 269.72540 * 21 20 19 23 23 C 1.38239 * 119.99786 * 179.81062 * 22 21 20 24 24 C 1.38229 * 120.00225 * 0.39967 * 23 22 21 25 25 C 1.38236 * 119.99736 * 359.85512 * 24 23 22 26 26 C 1.38230 * 120.00280 * 359.95475 * 25 24 23 27 27 C 1.47149 * 118.03988 * 50.78317 * 14 13 11 28 28 C 1.53711 * 108.15830 * 309.16197 * 27 14 13 29 29 O 1.42961 * 109.15228 * 52.53696 * 28 27 14 30 30 H 0.97001 * 120.00126 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99931 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46784 * 60.00125 * 10 9 7 33 33 H 1.08996 * 109.46978 * 300.00452 * 10 9 7 34 34 H 1.09005 * 109.68299 * 67.99540 * 13 11 10 35 35 H 1.09004 * 109.71142 * 307.46311 * 13 11 10 36 36 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 37 37 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 38 38 H 1.07996 * 119.99901 * 304.99613 * 18 17 15 39 39 H 1.07996 * 120.00097 * 359.97438 * 19 18 17 40 40 H 1.08997 * 109.47209 * 244.99700 * 20 19 18 41 41 H 1.09002 * 109.46637 * 4.99745 * 20 19 18 42 42 H 1.07997 * 120.00252 * 0.02562 * 22 21 20 43 43 H 1.08000 * 119.99903 * 180.23147 * 23 22 21 44 44 H 1.08003 * 120.00147 * 179.82929 * 24 23 22 45 45 H 1.08008 * 119.99559 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.99963 * 179.97438 * 26 25 24 47 47 H 1.08999 * 109.68019 * 68.93392 * 27 14 13 48 48 H 1.08992 * 109.68498 * 189.49193 * 27 14 13 49 49 H 1.09007 * 109.65849 * 292.56744 * 28 27 14 50 50 H 1.09004 * 109.44253 * 172.37370 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 1.0639 -4.8197 0.0022 12 1 0.3786 -4.7123 0.8431 13 6 1.8252 -6.1442 0.1282 14 7 0.8706 -7.2480 -0.0603 15 6 0.8016 -8.2640 0.8227 16 8 1.5333 -8.2777 1.7898 17 6 -0.1840 -9.3835 0.6077 18 6 -0.0596 -10.3843 1.7276 19 6 -1.1135 -10.7118 2.4334 20 6 -0.9890 -11.7121 3.5536 21 6 -1.5124 -11.1050 4.8297 22 6 -0.6573 -10.4147 5.6683 23 6 -1.1383 -9.8544 6.8369 24 6 -2.4726 -9.9915 7.1710 25 6 -3.3266 -10.6863 6.3350 26 6 -2.8465 -11.2432 5.1645 27 6 -0.0022 -7.2131 -1.2444 28 6 -0.6782 -5.8337 -1.3006 29 8 0.3234 -4.8169 -1.2207 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0016 32 1 2.6854 -3.7141 0.8911 33 1 2.6841 -3.7149 -0.8888 34 1 2.2777 -6.2149 1.1174 35 1 2.6017 -6.1960 -0.6351 36 1 -1.1960 -8.9787 0.5924 37 1 0.0253 -9.8744 -0.3427 38 1 0.8983 -10.8315 1.9481 39 1 -2.0714 -10.2643 2.2130 40 1 -1.5680 -12.6032 3.3110 41 1 0.0586 -11.9836 3.6834 42 1 0.3858 -10.3102 5.4088 43 1 -0.4711 -9.3120 7.4902 44 1 -2.8479 -9.5561 8.0854 45 1 -4.3691 -10.7937 6.5963 46 1 -3.5137 -11.7863 4.5115 47 1 0.5930 -7.3702 -2.1439 48 1 -0.7605 -7.9919 -1.1647 49 1 -1.3700 -5.7300 -0.4646 50 1 -1.2233 -5.7348 -2.2394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673284232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:19 Heat of formation + Delta-G solvation = -26.378437 kcal Electronic energy + Delta-G solvation = -28835.788065 eV Core-core repulsion = 24828.534820 eV Total energy + Delta-G solvation = -4007.253245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.40354 -39.54166 -38.40534 -35.89670 -35.05283 -34.38543 -32.81402 -32.12060 -31.12173 -30.25869 -29.35891 -27.93536 -26.12089 -24.80138 -23.51280 -22.82030 -22.45144 -21.50402 -20.87253 -19.92951 -19.15057 -17.41094 -17.06747 -17.00644 -16.52988 -15.98939 -15.81912 -15.44415 -15.40052 -15.05606 -14.74305 -14.48409 -14.35301 -14.05954 -13.71906 -13.65210 -13.48934 -13.25150 -13.12888 -12.80480 -12.69447 -12.44302 -12.31640 -12.12237 -12.06463 -11.63947 -11.50534 -11.31331 -11.18885 -11.01523 -10.88164 -10.80193 -10.46030 -10.07512 -9.92843 -9.89806 -9.68293 -9.29844 -9.15630 -8.92903 -8.86214 -8.54341 -6.88111 -5.71928 -3.00601 1.08477 1.16605 1.90598 2.50861 2.83463 3.46505 3.51728 3.54285 3.54374 3.93533 4.35806 4.42490 4.56622 4.59309 4.60403 4.71713 4.77216 4.77513 4.87619 4.92333 5.01171 5.05539 5.09499 5.13526 5.21098 5.26961 5.30767 5.36860 5.43388 5.50191 5.55103 5.61106 5.65602 5.69820 5.78146 5.80606 5.88853 5.95980 6.21188 6.27270 6.28446 6.30916 6.33391 6.38010 6.51386 6.57125 6.70390 6.77206 7.23962 7.45828 7.73557 8.03818 8.46152 9.57887 10.14893 10.50737 11.51020 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011418 B = 0.001998 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.786775 B =14008.183903 C =15495.904909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.727 5.727 10 C 0.163 3.837 11 C 0.074 3.926 12 H 0.063 0.937 13 C 0.085 3.915 14 N -0.616 5.616 15 C 0.518 3.482 16 O -0.536 6.536 17 C -0.111 4.111 18 C -0.131 4.131 19 C -0.150 4.150 20 C -0.050 4.050 21 C -0.078 4.078 22 C -0.111 4.111 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.121 4.121 26 C -0.119 4.119 27 C 0.071 3.929 28 C 0.045 3.955 29 O -0.358 6.358 30 H 0.254 0.746 31 H 0.387 0.613 32 H 0.036 0.964 33 H 0.030 0.970 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.079 0.921 48 H 0.091 0.909 49 H 0.054 0.946 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 -28.729 4.903 29.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.371 5.371 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.081 0.919 13 C -0.037 4.037 14 N -0.351 5.351 15 C 0.306 3.694 16 O -0.412 6.412 17 C -0.150 4.150 18 C -0.149 4.149 19 C -0.168 4.168 20 C -0.087 4.087 21 C -0.078 4.078 22 C -0.129 4.129 23 C -0.135 4.135 24 C -0.144 4.144 25 C -0.139 4.139 26 C -0.137 4.137 27 C -0.052 4.052 28 C -0.033 4.033 29 O -0.276 6.276 30 H 0.064 0.936 31 H 0.221 0.779 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.097 0.903 48 H 0.109 0.891 49 H 0.072 0.928 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.722 -28.486 5.280 29.531 hybrid contribution -0.063 0.870 0.066 0.875 sum -5.784 -27.616 5.346 28.717 Atomic orbital electron populations 1.69686 1.05122 1.25448 1.57834 1.24750 0.95539 0.97698 1.03090 0.86099 0.78774 0.84086 0.77139 1.20537 1.21886 1.21900 1.19275 0.91062 0.84066 1.42503 0.91063 1.42242 1.06011 0.99524 1.89339 1.20620 0.92418 0.84640 0.98823 1.22797 0.94201 0.94276 0.87217 0.91896 1.22330 0.91761 0.85449 1.04201 1.48213 1.38985 1.23173 1.24695 1.20574 0.84121 0.82651 0.82053 1.90702 1.43690 1.77588 1.29262 1.20780 0.99772 0.94412 1.00043 1.22401 0.98827 0.97367 0.96333 1.22671 0.98679 0.99440 0.96012 1.19672 1.01911 0.96763 0.90349 1.19782 0.93821 0.98489 0.95696 1.21120 0.99972 0.97450 0.94365 1.21194 0.95805 0.99430 0.97110 1.21170 0.93877 0.99446 0.99857 1.21137 0.99646 0.98234 0.94875 1.21038 0.94950 1.00564 0.97150 1.22613 0.94440 0.99698 0.88444 1.22994 0.90899 0.86496 1.02917 1.88158 1.49586 1.52041 1.37785 0.93615 0.77934 0.94632 0.95259 0.88072 0.90488 0.88512 0.87970 0.86577 0.87253 0.90102 0.90433 0.85946 0.86017 0.86192 0.86174 0.86170 0.90259 0.89108 0.92805 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.90 13.06 55.49 0.72 -28.18 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.73 -19.20 5.55 -59.91 -0.33 -19.54 16 10 C 0.16 3.41 5.93 -4.04 -0.02 3.38 16 11 C 0.07 1.28 2.81 -26.58 -0.07 1.21 16 12 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 13 C 0.09 1.25 5.92 -3.54 -0.02 1.23 16 14 N -0.62 -7.70 3.01 -172.03 -0.52 -8.22 16 15 C 0.52 6.60 7.70 -10.98 -0.08 6.52 16 16 O -0.54 -8.87 15.50 5.56 0.09 -8.79 16 17 C -0.11 -0.94 4.51 -29.03 -0.13 -1.07 16 18 C -0.13 -1.18 8.36 -36.02 -0.30 -1.48 16 19 C -0.15 -1.23 9.10 -36.02 -0.33 -1.56 16 20 C -0.05 -0.37 5.79 -29.03 -0.17 -0.54 16 21 C -0.08 -0.70 5.12 -104.63 -0.54 -1.24 16 22 C -0.11 -1.10 9.70 -39.58 -0.38 -1.48 16 23 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 24 C -0.13 -1.09 10.05 -39.59 -0.40 -1.49 16 25 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 26 C -0.12 -0.99 9.70 -39.58 -0.38 -1.37 16 27 C 0.07 0.68 6.57 -3.32 -0.02 0.66 16 28 C 0.05 0.55 7.00 37.53 0.26 0.81 16 29 O -0.36 -6.22 10.34 -35.23 -0.36 -6.58 16 30 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.39 10.85 7.67 -40.82 -0.31 10.54 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.57 7.08 -51.93 -0.37 1.20 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.10 0.68 7.32 -51.93 -0.38 0.30 16 37 H 0.10 0.63 8.01 -51.93 -0.42 0.21 16 38 H 0.12 1.10 7.84 -52.49 -0.41 0.69 16 39 H 0.11 0.85 7.84 -52.49 -0.41 0.43 16 40 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 41 H 0.08 0.56 7.73 -51.93 -0.40 0.16 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 45 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 46 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 0.57 6.05 -51.93 -0.31 0.25 16 49 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 50 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 413.25 15.07 6.23 6.23 Total: -1.00 -35.56 413.25 -10.89 -46.45 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -8.06 Total: 7.66 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -3.63 Total: -6.86 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.13 Total: -55.93 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.28 Total: -15.37 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.56 -10.89 -46.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673284232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.074 kcal (2) G-P(sol) polarization free energy of solvation -35.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds