Wall clock time and date at job start Wed Apr 1 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86808 * 119.99885 * 2 1 4 4 H 1.48492 * 109.46739 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46813 * 300.00069 * 3 2 1 6 6 H 1.48495 * 109.46923 * 59.99938 * 3 2 1 7 7 C 1.38806 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00301 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00278 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00332 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47107 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.50909 * 305.10051 * 11 10 9 13 13 C 1.53295 * 109.51227 * 185.00279 * 11 10 9 14 14 N 1.47148 * 108.38524 * 187.72475 * 13 11 10 15 15 C 1.34780 * 120.97846 * 230.51363 * 14 13 11 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 14 13 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 15 14 19 19 C 1.30999 * 120.00002 * 125.00209 * 18 17 15 20 20 C 1.50703 * 120.00002 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47036 * 124.99261 * 20 19 18 22 22 C 1.38228 * 120.00349 * 269.72540 * 21 20 19 23 23 C 1.38239 * 119.99786 * 179.81062 * 22 21 20 24 24 C 1.38229 * 120.00225 * 0.39967 * 23 22 21 25 25 C 1.38236 * 119.99736 * 359.85512 * 24 23 22 26 26 C 1.38230 * 120.00280 * 359.95475 * 25 24 23 27 27 C 1.47149 * 118.03988 * 50.78317 * 14 13 11 28 28 C 1.53711 * 108.15830 * 309.16197 * 27 14 13 29 29 O 1.42961 * 109.15228 * 52.53696 * 28 27 14 30 30 H 0.97001 * 120.00126 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99931 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46784 * 60.00125 * 10 9 7 33 33 H 1.08996 * 109.46978 * 300.00452 * 10 9 7 34 34 H 1.09005 * 109.68299 * 67.99540 * 13 11 10 35 35 H 1.09004 * 109.71142 * 307.46311 * 13 11 10 36 36 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 37 37 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 38 38 H 1.07996 * 119.99901 * 304.99613 * 18 17 15 39 39 H 1.07996 * 120.00097 * 359.97438 * 19 18 17 40 40 H 1.08997 * 109.47209 * 244.99700 * 20 19 18 41 41 H 1.09002 * 109.46637 * 4.99745 * 20 19 18 42 42 H 1.07997 * 120.00252 * 0.02562 * 22 21 20 43 43 H 1.08000 * 119.99903 * 180.23147 * 23 22 21 44 44 H 1.08003 * 120.00147 * 179.82929 * 24 23 22 45 45 H 1.08008 * 119.99559 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.99963 * 179.97438 * 26 25 24 47 47 H 1.08999 * 109.68019 * 68.93392 * 27 14 13 48 48 H 1.08992 * 109.68498 * 189.49193 * 27 14 13 49 49 H 1.09007 * 109.65849 * 292.56744 * 28 27 14 50 50 H 1.09004 * 109.44253 * 172.37370 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 1.0639 -4.8197 0.0022 12 1 0.3786 -4.7123 0.8431 13 6 1.8252 -6.1442 0.1282 14 7 0.8706 -7.2480 -0.0603 15 6 0.8016 -8.2640 0.8227 16 8 1.5333 -8.2777 1.7898 17 6 -0.1840 -9.3835 0.6077 18 6 -0.0596 -10.3843 1.7276 19 6 -1.1135 -10.7118 2.4334 20 6 -0.9890 -11.7121 3.5536 21 6 -1.5124 -11.1050 4.8297 22 6 -0.6573 -10.4147 5.6683 23 6 -1.1383 -9.8544 6.8369 24 6 -2.4726 -9.9915 7.1710 25 6 -3.3266 -10.6863 6.3350 26 6 -2.8465 -11.2432 5.1645 27 6 -0.0022 -7.2131 -1.2444 28 6 -0.6782 -5.8337 -1.3006 29 8 0.3234 -4.8169 -1.2207 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0016 32 1 2.6854 -3.7141 0.8911 33 1 2.6841 -3.7149 -0.8888 34 1 2.2777 -6.2149 1.1174 35 1 2.6017 -6.1960 -0.6351 36 1 -1.1960 -8.9787 0.5924 37 1 0.0253 -9.8744 -0.3427 38 1 0.8983 -10.8315 1.9481 39 1 -2.0714 -10.2643 2.2130 40 1 -1.5680 -12.6032 3.3110 41 1 0.0586 -11.9836 3.6834 42 1 0.3858 -10.3102 5.4088 43 1 -0.4711 -9.3120 7.4902 44 1 -2.8479 -9.5561 8.0854 45 1 -4.3691 -10.7937 6.5963 46 1 -3.5137 -11.7863 4.5115 47 1 0.5930 -7.3702 -2.1439 48 1 -0.7605 -7.9919 -1.1647 49 1 -1.3700 -5.7300 -0.4646 50 1 -1.2233 -5.7348 -2.2394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673284232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:18 Heat of formation + Delta-G solvation = -48.013435 kcal Electronic energy + Delta-G solvation = -28836.726229 eV Core-core repulsion = 24828.534820 eV Total energy + Delta-G solvation = -4008.191409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.44402 -40.18401 -39.56619 -36.68477 -36.56497 -35.74382 -34.00712 -33.33867 -31.90227 -31.76414 -30.13278 -29.12007 -27.39934 -25.91550 -24.85389 -23.90716 -23.46740 -22.45632 -22.04890 -20.63511 -20.05687 -19.25728 -18.22917 -17.79286 -17.64494 -17.10712 -16.78870 -16.63012 -16.09982 -16.05784 -15.98168 -15.87423 -15.38702 -15.05554 -14.94679 -14.71175 -14.39003 -14.28439 -14.20603 -14.05654 -13.93498 -13.51576 -13.39232 -13.04688 -12.85092 -12.80474 -12.75936 -12.60730 -12.25885 -12.16700 -12.03732 -11.93884 -11.88155 -11.80532 -11.63728 -11.20664 -10.99012 -10.92763 -9.95988 -9.82177 -9.62529 -9.58755 -9.03254 -7.95828 -5.25702 0.42733 0.49801 1.23325 1.46814 1.48471 1.55592 1.58748 1.90713 2.55222 2.75123 2.88379 3.38160 3.48690 3.60807 3.78465 3.88873 3.94284 3.97421 4.00646 4.08032 4.12417 4.16996 4.23442 4.30054 4.33935 4.39516 4.45339 4.49105 4.53811 4.63585 4.64467 4.65423 4.71949 4.78196 4.85166 4.88677 4.93356 4.96829 5.06798 5.16199 5.17582 5.28100 5.47108 5.56995 5.63146 5.67145 5.73052 5.88432 6.13924 6.22568 6.25853 6.31622 7.07410 7.31616 8.04732 8.29847 9.28181 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011418 B = 0.001998 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.786775 B =14008.183903 C =15495.904909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.247 4.247 8 H 0.078 0.922 9 N -0.741 5.741 10 C 0.160 3.840 11 C 0.089 3.911 12 H 0.044 0.956 13 C 0.095 3.905 14 N -0.618 5.618 15 C 0.511 3.489 16 O -0.583 6.583 17 C -0.101 4.101 18 C -0.147 4.147 19 C -0.143 4.143 20 C -0.049 4.049 21 C -0.087 4.087 22 C -0.135 4.135 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.127 4.127 26 C -0.124 4.124 27 C 0.076 3.924 28 C 0.035 3.965 29 O -0.388 6.388 30 H 0.252 0.748 31 H 0.374 0.626 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.135 0.865 38 H 0.104 0.896 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.127 0.873 44 H 0.136 0.864 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.094 0.906 48 H 0.134 0.866 49 H 0.049 0.951 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 -30.388 3.816 31.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.383 5.383 10 C 0.033 3.967 11 C 0.030 3.970 12 H 0.062 0.938 13 C -0.029 4.029 14 N -0.351 5.351 15 C 0.302 3.698 16 O -0.463 6.463 17 C -0.140 4.140 18 C -0.166 4.166 19 C -0.161 4.161 20 C -0.086 4.086 21 C -0.087 4.087 22 C -0.153 4.153 23 C -0.153 4.153 24 C -0.155 4.155 25 C -0.144 4.144 26 C -0.142 4.142 27 C -0.046 4.046 28 C -0.042 4.042 29 O -0.307 6.307 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.137 0.863 37 H 0.152 0.848 38 H 0.122 0.878 39 H 0.137 0.863 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.133 0.867 43 H 0.145 0.855 44 H 0.154 0.846 45 H 0.160 0.840 46 H 0.161 0.839 47 H 0.112 0.888 48 H 0.151 0.849 49 H 0.067 0.933 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.680 -30.189 4.169 31.199 hybrid contribution 0.203 1.312 0.417 1.391 sum -6.477 -28.877 4.586 29.948 Atomic orbital electron populations 1.69848 1.06733 1.26057 1.59440 1.25642 0.96487 1.01309 1.03563 0.85002 0.78209 0.79393 0.76713 1.18904 1.21861 1.21924 1.19706 0.91608 0.85199 1.41324 0.90375 1.42434 1.05650 1.00891 1.89365 1.20763 0.93150 0.83984 0.98833 1.22418 0.93350 0.94262 0.86940 0.93829 1.22022 0.92098 0.85041 1.03744 1.48334 1.38822 1.22315 1.25668 1.21425 0.84112 0.83228 0.81019 1.90685 1.45734 1.78668 1.31198 1.20837 0.99264 0.92623 1.01267 1.22413 0.98599 0.98149 0.97403 1.22798 0.98846 0.99044 0.95403 1.19710 1.02065 0.97317 0.89541 1.19990 0.94233 0.98360 0.96086 1.21251 1.00056 0.98688 0.95266 1.21400 0.96634 0.99895 0.97329 1.21451 0.93654 0.99642 1.00724 1.21489 1.00721 0.97557 0.94681 1.21351 0.94897 1.00405 0.97512 1.22814 0.94995 0.99123 0.87661 1.23345 0.90053 0.86793 1.04051 1.88091 1.50867 1.54570 1.37214 0.93963 0.79385 0.94086 0.95045 0.89505 0.89541 0.86313 0.84770 0.87833 0.86264 0.88039 0.90834 0.86733 0.85504 0.84624 0.83979 0.83906 0.88794 0.84853 0.93259 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.28 13.06 21.65 0.28 -60.99 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.98 47.29 29.55 68.60 2.03 49.32 16 4 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 7 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 N -0.74 -40.02 5.55 -343.46 -1.91 -41.93 16 10 C 0.16 6.79 5.93 86.38 0.51 7.30 16 11 C 0.09 3.15 2.81 30.69 0.09 3.23 16 12 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 13 C 0.09 2.75 5.92 86.35 0.51 3.27 16 14 N -0.62 -14.42 3.01 -816.55 -2.46 -16.88 16 15 C 0.51 12.35 7.70 87.66 0.68 13.03 16 16 O -0.58 -19.51 15.50 -3.03 -0.05 -19.56 16 17 C -0.10 -1.41 4.51 29.10 0.13 -1.27 16 18 C -0.15 -2.43 8.36 25.65 0.21 -2.21 16 19 C -0.14 -2.08 9.10 25.65 0.23 -1.85 16 20 C -0.05 -0.68 5.79 29.10 0.17 -0.51 16 21 C -0.09 -1.50 5.12 -19.87 -0.10 -1.60 16 22 C -0.13 -2.74 9.70 22.27 0.22 -2.52 16 23 C -0.13 -2.59 10.05 22.27 0.22 -2.36 16 24 C -0.14 -2.28 10.05 22.27 0.22 -2.06 16 25 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 26 C -0.12 -1.84 9.70 22.27 0.22 -1.62 16 27 C 0.08 1.19 6.57 86.49 0.57 1.76 16 28 C 0.03 0.77 7.00 72.22 0.51 1.28 16 29 O -0.39 -13.38 10.34 -148.98 -1.54 -14.92 16 30 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 31 H 0.37 21.71 7.67 -92.71 -0.71 21.00 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 2.77 7.08 -2.38 -0.02 2.75 16 35 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 36 H 0.12 1.17 7.32 -2.39 -0.02 1.15 16 37 H 0.13 1.03 8.01 -2.39 -0.02 1.01 16 38 H 0.10 1.95 7.84 -2.91 -0.02 1.93 16 39 H 0.12 1.50 7.84 -2.91 -0.02 1.48 16 40 H 0.10 0.95 8.09 -2.39 -0.02 0.93 16 41 H 0.07 1.05 7.73 -2.39 -0.02 1.03 16 42 H 0.11 2.37 8.06 -2.91 -0.02 2.35 16 43 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 44 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 45 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 46 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 47 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.13 0.99 6.05 -2.39 -0.01 0.97 16 49 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 50 H 0.13 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -79.32 413.25 2.48 -76.84 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.21 Total: 33.60 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 5.91 Total: -5.48 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -4.09 Total: -119.80 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.59 Total: -34.48 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -79.32 2.48 -76.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673284232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.827 kcal (2) G-P(sol) polarization free energy of solvation -79.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds