Wall clock time and date at job start Wed Apr 1 2020 03:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00451 * 2 1 4 4 H 1.48495 * 109.47041 * 274.99057 * 3 2 1 5 5 H 1.48504 * 109.46741 * 34.98774 * 3 2 1 6 6 H 1.48495 * 109.47259 * 154.98713 * 3 2 1 7 7 C 1.38807 * 119.99465 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99874 * 185.07247 * 7 2 1 9 9 N 1.36937 * 120.00266 * 5.07684 * 7 2 1 10 10 C 1.47676 * 134.45724 * 173.49305 * 9 7 2 11 11 C 1.53437 * 85.97990 * 155.68019 * 10 9 7 12 12 C 1.47668 * 134.45678 * 353.46159 * 9 7 2 13 13 C 1.52897 * 113.56051 * 137.62819 * 11 10 9 14 14 N 1.47343 * 108.04950 * 179.97438 * 13 11 10 15 15 C 1.34770 * 121.05549 * 131.60227 * 14 13 11 16 16 O 1.21284 * 120.00273 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00075 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47194 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47146 * 179.97438 * 18 17 15 20 20 C 1.50704 * 109.47218 * 180.02562 * 19 18 17 21 21 C 1.38232 * 119.99617 * 90.00039 * 20 19 18 22 22 C 1.38241 * 119.99390 * 179.97438 * 21 20 19 23 23 C 1.38225 * 120.00515 * 0.07646 * 22 21 20 24 24 C 1.38242 * 119.99701 * 359.89953 * 23 22 21 25 25 C 1.38231 * 120.00001 * 0.05268 * 24 23 22 26 26 C 1.47121 * 117.88826 * 311.87864 * 14 13 11 27 27 C 1.52773 * 108.97968 * 51.89565 * 26 14 13 28 28 O 1.42484 * 113.81513 * 268.75845 * 11 10 9 29 29 H 0.97001 * 119.99325 * 359.97438 * 1 2 3 30 30 H 1.08997 * 113.79144 * 41.41047 * 10 9 7 31 31 H 1.09004 * 113.89699 * 269.95899 * 10 9 7 32 32 H 1.08997 * 113.79373 * 90.05152 * 12 9 7 33 33 H 1.08994 * 113.79137 * 318.57415 * 12 9 7 34 34 H 1.09004 * 109.74416 * 60.33476 * 13 11 10 35 35 H 1.08999 * 109.74778 * 299.61835 * 13 11 10 36 36 H 1.08996 * 109.46998 * 60.00096 * 17 15 14 37 37 H 1.08999 * 109.47298 * 300.00453 * 17 15 14 38 38 H 1.09004 * 109.47068 * 60.00452 * 18 17 15 39 39 H 1.08999 * 109.47488 * 300.00484 * 18 17 15 40 40 H 1.08996 * 109.46885 * 60.00340 * 19 18 17 41 41 H 1.09004 * 109.47450 * 300.00199 * 19 18 17 42 42 H 1.07996 * 120.00623 * 359.70324 * 21 20 19 43 43 H 1.08001 * 119.99450 * 179.97438 * 22 21 20 44 44 H 1.08000 * 120.00430 * 180.02562 * 23 22 21 45 45 H 1.08003 * 119.99527 * 180.02562 * 24 23 22 46 46 H 1.08001 * 120.00205 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.59777 * 171.72565 * 26 14 13 48 48 H 1.09000 * 109.59473 * 292.18371 * 26 14 13 49 49 H 1.08998 * 109.56787 * 186.06772 * 27 26 14 50 50 H 1.08996 * 109.36003 * 66.04585 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5045 2.6198 0.8028 6 1 3.5966 1.4119 0.5920 7 6 2.0101 -1.2022 0.0005 8 1 3.0870 -1.2040 0.0832 9 7 1.3294 -2.3858 -0.1039 10 6 1.7296 -3.7992 -0.2551 11 6 0.3720 -4.1385 0.3741 12 6 -0.0989 -2.7603 -0.1097 13 6 -0.3450 -5.3027 -0.3104 14 7 -1.6246 -5.5235 0.3859 15 6 -2.7772 -5.6499 -0.3012 16 8 -2.7718 -5.5828 -1.5121 17 6 -4.0726 -5.8747 0.4352 18 6 -5.2196 -5.9821 -0.5716 19 6 -6.5348 -6.2109 0.1760 20 6 -7.6645 -6.3174 -0.8157 21 6 -8.0137 -7.5496 -1.3358 22 6 -9.0504 -7.6472 -2.2451 23 6 -9.7366 -6.5126 -2.6355 24 6 -9.3876 -5.2804 -2.1150 25 6 -8.3517 -5.1829 -1.2050 26 6 -1.6051 -5.5955 1.8552 27 6 -0.8791 -4.3681 2.4032 28 8 0.4112 -4.2665 1.7926 29 1 -0.4849 0.8401 0.0004 30 1 2.5830 -4.0829 0.3607 31 1 1.8269 -4.1221 -1.2917 32 1 -0.5463 -2.7724 -1.1036 33 1 -0.6985 -2.2188 0.6218 34 1 0.2686 -6.2014 -0.2472 35 1 -0.5321 -5.0566 -1.3556 36 1 -4.2578 -5.0377 1.1084 37 1 -4.0073 -6.7972 1.0121 38 1 -5.0347 -6.8190 -1.2451 39 1 -5.2847 -5.0593 -1.1481 40 1 -6.7199 -5.3744 0.8498 41 1 -6.4694 -7.1339 0.7522 42 1 -7.4740 -8.4353 -1.0351 43 1 -9.3230 -8.6099 -2.6517 44 1 -10.5468 -6.5890 -3.3456 45 1 -9.9241 -4.3940 -2.4197 46 1 -8.0787 -4.2202 -0.7986 47 1 -2.6271 -5.6134 2.2340 48 1 -1.0804 -6.4975 2.1700 49 1 -0.7641 -4.4638 3.4828 50 1 -1.4599 -3.4739 2.1770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673514179.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:50 Heat of formation + Delta-G solvation = 2.872039 kcal Electronic energy + Delta-G solvation = -29865.252371 eV Core-core repulsion = 25859.267521 eV Total energy + Delta-G solvation = -4005.984850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.41510 -39.52695 -38.73503 -36.23103 -35.11506 -34.40420 -32.29772 -31.50249 -31.09649 -29.98046 -28.21243 -27.16921 -25.66684 -25.07304 -23.29116 -22.90881 -22.78818 -21.58181 -20.94113 -19.18061 -18.71032 -17.26708 -16.83119 -16.78250 -16.20579 -16.06640 -15.58014 -15.31502 -15.21966 -14.89440 -14.54851 -14.22025 -14.09064 -13.77802 -13.62575 -13.59503 -13.29952 -13.28525 -12.99578 -12.65814 -12.37616 -12.29983 -12.05413 -11.91746 -11.59117 -11.34222 -11.27476 -11.13464 -11.05223 -10.87835 -10.81577 -10.79863 -10.64490 -10.23175 -9.97099 -9.62393 -9.50681 -9.23896 -9.13157 -8.89324 -8.79779 -8.22562 -6.85582 -5.75494 -3.06708 1.14116 1.19015 2.73997 3.00598 3.41141 3.45914 3.48073 3.57113 4.04871 4.42729 4.46569 4.51891 4.59331 4.78459 4.87987 4.88712 4.92713 4.98960 5.04668 5.12460 5.17010 5.25193 5.25602 5.29695 5.35148 5.40892 5.43984 5.47647 5.51849 5.60865 5.74853 5.80863 5.83046 5.84939 5.97433 5.98540 6.09034 6.19703 6.25499 6.30271 6.31415 6.43768 6.47638 6.50787 6.59536 6.79925 7.02332 7.18483 7.48250 7.51786 7.81781 7.98767 8.28003 9.05742 9.72289 10.59810 11.42226 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.002222 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.768632 B =12597.038008 C =13785.835425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.604 5.604 10 C 0.136 3.864 11 C 0.049 3.951 12 C 0.155 3.845 13 C 0.099 3.901 14 N -0.612 5.612 15 C 0.515 3.485 16 O -0.539 6.539 17 C -0.139 4.139 18 C -0.098 4.098 19 C -0.082 4.082 20 C -0.078 4.078 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.116 4.116 26 C 0.074 3.926 27 C 0.046 3.954 28 O -0.342 6.342 29 H 0.253 0.747 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.101 0.899 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.742 -17.414 2.973 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.330 5.330 10 C 0.009 3.991 11 C 0.007 3.993 12 C 0.030 3.970 13 C -0.024 4.024 14 N -0.346 5.346 15 C 0.303 3.697 16 O -0.416 6.416 17 C -0.179 4.179 18 C -0.136 4.136 19 C -0.120 4.120 20 C -0.078 4.078 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.134 4.134 26 C -0.049 4.049 27 C -0.032 4.032 28 O -0.260 6.260 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.109 0.891 48 H 0.093 0.907 49 H 0.119 0.881 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.522 -17.019 2.460 23.847 hybrid contribution 0.177 0.981 -0.153 1.009 sum -16.345 -16.038 2.307 23.016 Atomic orbital electron populations 1.69840 1.05083 1.25286 1.56554 1.24815 0.95685 0.97541 1.02439 0.86106 0.78730 0.83528 0.77482 1.21643 1.21753 1.20522 1.19001 0.90748 0.81821 1.43031 0.90081 1.45777 1.01961 1.00539 1.84685 1.22495 0.93421 0.86517 0.96657 1.23719 0.99177 0.94780 0.81647 1.22605 0.88495 0.87793 0.98134 1.22235 0.83270 0.98396 0.98503 1.48189 1.07608 1.71948 1.06855 1.20648 0.84962 0.76134 0.87919 1.90702 1.86431 1.50433 1.14064 1.21710 0.92642 1.03872 0.99676 1.21320 0.91139 1.03893 0.97217 1.20662 0.92272 1.02795 0.96223 1.19903 0.96651 0.93297 0.97928 1.21062 0.97570 0.97232 0.97731 1.21137 0.96322 0.98510 0.97845 1.21140 1.00240 0.92885 1.00343 1.21168 0.97557 0.97668 0.97266 1.21114 0.95986 0.98265 0.98057 1.22344 1.02233 1.00105 0.80229 1.22789 0.86213 0.96460 0.97758 1.87928 1.26111 1.93541 1.18430 0.93714 0.92658 0.93252 0.94732 0.91099 0.91428 0.88080 0.88738 0.89032 0.91069 0.90787 0.90732 0.90914 0.86147 0.86237 0.86312 0.86130 0.85945 0.89132 0.90728 0.88127 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.92 11.51 55.49 0.64 -27.28 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.58 29.56 -169.99 -5.02 17.56 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.22 -6.30 10.69 -15.06 -0.16 -6.46 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 9 N -0.60 -16.01 3.70 -180.30 -0.67 -16.68 16 10 C 0.14 2.86 8.33 -3.18 -0.03 2.84 16 11 C 0.05 0.95 1.21 -90.30 -0.11 0.84 16 12 C 0.16 3.80 6.56 -3.17 -0.02 3.78 16 13 C 0.10 1.64 5.78 -3.63 -0.02 1.62 16 14 N -0.61 -8.83 3.03 -172.71 -0.52 -9.35 16 15 C 0.51 7.55 7.71 -10.99 -0.08 7.46 16 16 O -0.54 -10.05 15.48 5.55 0.09 -9.97 16 17 C -0.14 -1.37 4.07 -27.88 -0.11 -1.48 16 18 C -0.10 -1.01 4.49 -26.73 -0.12 -1.13 16 19 C -0.08 -0.66 5.34 -27.88 -0.15 -0.81 16 20 C -0.08 -0.73 5.13 -104.62 -0.54 -1.27 16 21 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 22 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 23 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 24 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 25 C -0.12 -1.10 9.70 -39.59 -0.38 -1.49 16 26 C 0.07 0.83 6.47 -3.82 -0.02 0.81 16 27 C 0.05 0.65 6.87 37.04 0.25 0.91 16 28 O -0.34 -6.50 10.52 -35.23 -0.37 -6.87 16 29 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 32 H 0.03 0.90 7.94 -51.93 -0.41 0.49 16 33 H 0.07 1.91 6.50 -51.93 -0.34 1.58 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.84 6.91 -51.93 -0.36 1.48 16 36 H 0.09 0.81 7.68 -51.93 -0.40 0.41 16 37 H 0.09 0.67 8.00 -51.93 -0.42 0.25 16 38 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 41 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.09 0.72 6.03 -51.93 -0.31 0.41 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 50 H 0.06 0.97 7.19 -51.93 -0.37 0.60 16 LS Contribution 402.54 15.07 6.07 6.07 Total: -1.00 -35.69 402.54 -11.03 -46.72 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -8.06 Total: 0.31 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -3.17 Total: -0.50 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.55 Total: -53.31 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.28 Total: -16.84 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.69 -11.03 -46.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673514179.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.590 kcal (2) G-P(sol) polarization free energy of solvation -35.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds