Wall clock time and date at job start Wed Apr 1 2020 03:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00451 * 2 1 4 4 H 1.48495 * 109.47041 * 274.99057 * 3 2 1 5 5 H 1.48504 * 109.46741 * 34.98774 * 3 2 1 6 6 H 1.48495 * 109.47259 * 154.98713 * 3 2 1 7 7 C 1.38807 * 119.99465 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99874 * 185.07247 * 7 2 1 9 9 N 1.36937 * 120.00266 * 5.07684 * 7 2 1 10 10 C 1.47676 * 134.45724 * 173.49305 * 9 7 2 11 11 C 1.53437 * 85.97990 * 155.68019 * 10 9 7 12 12 C 1.47668 * 134.45678 * 353.46159 * 9 7 2 13 13 C 1.52897 * 113.56051 * 137.62819 * 11 10 9 14 14 N 1.47343 * 108.04950 * 179.97438 * 13 11 10 15 15 C 1.34770 * 121.05549 * 131.60227 * 14 13 11 16 16 O 1.21284 * 120.00273 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00075 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47194 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47146 * 179.97438 * 18 17 15 20 20 C 1.50704 * 109.47218 * 180.02562 * 19 18 17 21 21 C 1.38232 * 119.99617 * 90.00039 * 20 19 18 22 22 C 1.38241 * 119.99390 * 179.97438 * 21 20 19 23 23 C 1.38225 * 120.00515 * 0.07646 * 22 21 20 24 24 C 1.38242 * 119.99701 * 359.89953 * 23 22 21 25 25 C 1.38231 * 120.00001 * 0.05268 * 24 23 22 26 26 C 1.47121 * 117.88826 * 311.87864 * 14 13 11 27 27 C 1.52773 * 108.97968 * 51.89565 * 26 14 13 28 28 O 1.42484 * 113.81513 * 268.75845 * 11 10 9 29 29 H 0.97001 * 119.99325 * 359.97438 * 1 2 3 30 30 H 1.08997 * 113.79144 * 41.41047 * 10 9 7 31 31 H 1.09004 * 113.89699 * 269.95899 * 10 9 7 32 32 H 1.08997 * 113.79373 * 90.05152 * 12 9 7 33 33 H 1.08994 * 113.79137 * 318.57415 * 12 9 7 34 34 H 1.09004 * 109.74416 * 60.33476 * 13 11 10 35 35 H 1.08999 * 109.74778 * 299.61835 * 13 11 10 36 36 H 1.08996 * 109.46998 * 60.00096 * 17 15 14 37 37 H 1.08999 * 109.47298 * 300.00453 * 17 15 14 38 38 H 1.09004 * 109.47068 * 60.00452 * 18 17 15 39 39 H 1.08999 * 109.47488 * 300.00484 * 18 17 15 40 40 H 1.08996 * 109.46885 * 60.00340 * 19 18 17 41 41 H 1.09004 * 109.47450 * 300.00199 * 19 18 17 42 42 H 1.07996 * 120.00623 * 359.70324 * 21 20 19 43 43 H 1.08001 * 119.99450 * 179.97438 * 22 21 20 44 44 H 1.08000 * 120.00430 * 180.02562 * 23 22 21 45 45 H 1.08003 * 119.99527 * 180.02562 * 24 23 22 46 46 H 1.08001 * 120.00205 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.59777 * 171.72565 * 26 14 13 48 48 H 1.09000 * 109.59473 * 292.18371 * 26 14 13 49 49 H 1.08998 * 109.56787 * 186.06772 * 27 26 14 50 50 H 1.08996 * 109.36003 * 66.04585 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5045 2.6198 0.8028 6 1 3.5966 1.4119 0.5920 7 6 2.0101 -1.2022 0.0005 8 1 3.0870 -1.2040 0.0832 9 7 1.3294 -2.3858 -0.1039 10 6 1.7296 -3.7992 -0.2551 11 6 0.3720 -4.1385 0.3741 12 6 -0.0989 -2.7603 -0.1097 13 6 -0.3450 -5.3027 -0.3104 14 7 -1.6246 -5.5235 0.3859 15 6 -2.7772 -5.6499 -0.3012 16 8 -2.7718 -5.5828 -1.5121 17 6 -4.0726 -5.8747 0.4352 18 6 -5.2196 -5.9821 -0.5716 19 6 -6.5348 -6.2109 0.1760 20 6 -7.6645 -6.3174 -0.8157 21 6 -8.0137 -7.5496 -1.3358 22 6 -9.0504 -7.6472 -2.2451 23 6 -9.7366 -6.5126 -2.6355 24 6 -9.3876 -5.2804 -2.1150 25 6 -8.3517 -5.1829 -1.2050 26 6 -1.6051 -5.5955 1.8552 27 6 -0.8791 -4.3681 2.4032 28 8 0.4112 -4.2665 1.7926 29 1 -0.4849 0.8401 0.0004 30 1 2.5830 -4.0829 0.3607 31 1 1.8269 -4.1221 -1.2917 32 1 -0.5463 -2.7724 -1.1036 33 1 -0.6985 -2.2188 0.6218 34 1 0.2686 -6.2014 -0.2472 35 1 -0.5321 -5.0566 -1.3556 36 1 -4.2578 -5.0377 1.1084 37 1 -4.0073 -6.7972 1.0121 38 1 -5.0347 -6.8190 -1.2451 39 1 -5.2847 -5.0593 -1.1481 40 1 -6.7199 -5.3744 0.8498 41 1 -6.4694 -7.1339 0.7522 42 1 -7.4740 -8.4353 -1.0351 43 1 -9.3230 -8.6099 -2.6517 44 1 -10.5468 -6.5890 -3.3456 45 1 -9.9241 -4.3940 -2.4197 46 1 -8.0787 -4.2202 -0.7986 47 1 -2.6271 -5.6134 2.2340 48 1 -1.0804 -6.4975 2.1700 49 1 -0.7641 -4.4638 3.4828 50 1 -1.4599 -3.4739 2.1770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673514179.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:49 Heat of formation + Delta-G solvation = -19.281179 kcal Electronic energy + Delta-G solvation = -29866.213006 eV Core-core repulsion = 25859.267521 eV Total energy + Delta-G solvation = -4006.945485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.73923 -40.33675 -39.96490 -37.77473 -35.89233 -35.71038 -34.31980 -32.37704 -31.72999 -31.37983 -29.48960 -28.56370 -26.99668 -26.85241 -24.64867 -23.98849 -23.42924 -23.01526 -21.63783 -20.64344 -19.92461 -18.84036 -18.26191 -17.60623 -17.52173 -17.10117 -17.01648 -16.56605 -16.20292 -15.94744 -15.88172 -15.73873 -15.27216 -14.95796 -14.93365 -14.67555 -14.34271 -14.22290 -14.22091 -13.89613 -13.70659 -13.40681 -13.16794 -12.96480 -12.80542 -12.78833 -12.75673 -12.52970 -12.36508 -12.06079 -11.95702 -11.93097 -11.75409 -11.70753 -11.52234 -11.43522 -10.99636 -10.80743 -10.74165 -9.78826 -9.55472 -9.51656 -8.96884 -7.95401 -5.29025 0.48483 0.53275 1.41719 1.44784 1.53677 1.62686 1.92352 2.43349 2.65167 2.90752 3.21858 3.33007 3.52006 3.62346 3.77502 3.81718 3.96297 4.02550 4.16429 4.17730 4.19388 4.27019 4.34048 4.35423 4.43981 4.55468 4.60955 4.62055 4.65214 4.67498 4.69850 4.73471 4.80683 4.81074 4.88484 4.91913 4.97108 5.11955 5.13638 5.18245 5.22067 5.26124 5.33409 5.42257 5.45674 5.61361 5.65857 5.78020 5.85075 6.17509 6.33168 6.40657 6.85355 7.16246 7.54952 8.49071 9.22035 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.002222 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.768632 B =12597.038008 C =13785.835425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.982 3.018 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.264 1.264 7 C -0.233 4.233 8 H 0.087 0.913 9 N -0.635 5.635 10 C 0.132 3.868 11 C 0.080 3.920 12 C 0.156 3.844 13 C 0.107 3.893 14 N -0.616 5.616 15 C 0.506 3.494 16 O -0.590 6.590 17 C -0.130 4.130 18 C -0.092 4.092 19 C -0.073 4.073 20 C -0.093 4.093 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.138 4.138 24 C -0.133 4.133 25 C -0.136 4.136 26 C 0.079 3.921 27 C 0.036 3.964 28 O -0.363 6.363 29 H 0.248 0.752 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.007 0.993 33 H 0.036 0.964 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.133 0.867 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.132 0.868 46 H 0.125 0.875 47 H 0.132 0.868 48 H 0.103 0.897 49 H 0.136 0.864 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.923 -19.649 4.857 26.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.810 3.190 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.188 1.188 7 C -0.361 4.361 8 H 0.105 0.895 9 N -0.362 5.362 10 C 0.007 3.993 11 C 0.038 3.962 12 C 0.030 3.970 13 C -0.017 4.017 14 N -0.349 5.349 15 C 0.296 3.704 16 O -0.470 6.470 17 C -0.169 4.169 18 C -0.130 4.130 19 C -0.110 4.110 20 C -0.093 4.093 21 C -0.147 4.147 22 C -0.147 4.147 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.043 4.043 27 C -0.041 4.041 28 O -0.281 6.281 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.024 0.976 33 H 0.055 0.945 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.132 0.868 37 H 0.151 0.849 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.154 0.846 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.150 0.850 46 H 0.143 0.857 47 H 0.150 0.850 48 H 0.121 0.879 49 H 0.153 0.847 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -16.690 -19.294 4.378 25.884 hybrid contribution 0.222 1.657 -0.740 1.828 sum -16.468 -17.637 3.639 24.403 Atomic orbital electron populations 1.70049 1.06672 1.25599 1.58116 1.25730 0.96617 1.01151 1.02853 0.85004 0.77964 0.78800 0.77260 1.21519 1.21961 1.18796 1.19438 0.91342 0.83187 1.42102 0.89515 1.46185 1.03083 1.01995 1.84916 1.22722 0.94920 0.83580 0.98045 1.23158 0.97444 0.93028 0.82569 1.22427 0.87408 0.91183 0.95940 1.21957 0.84770 0.97955 0.97037 1.48356 1.06737 1.71461 1.08383 1.21590 0.86275 0.74850 0.87636 1.90683 1.87169 1.52640 1.16555 1.21782 0.89187 1.06555 0.99344 1.21213 0.92840 1.01681 0.97244 1.20617 0.90207 1.04358 0.95812 1.20150 0.97173 0.93473 0.98520 1.21350 0.97865 0.97677 0.97809 1.21468 0.96128 0.99441 0.97670 1.21448 1.00770 0.92775 1.00583 1.21434 0.97712 0.98576 0.97340 1.21333 0.96653 0.98716 0.98734 1.22582 1.04670 0.99268 0.77764 1.23141 0.84312 0.97029 0.99586 1.87882 1.29092 1.93564 1.17603 0.94349 0.91432 0.91426 0.97556 0.94527 0.88491 0.90434 0.86823 0.84917 0.92495 0.94009 0.89774 0.88553 0.84597 0.84312 0.84516 0.84965 0.85745 0.85006 0.87897 0.84680 0.95034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.38 11.51 21.65 0.25 -60.13 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.98 47.36 29.56 68.60 2.03 49.39 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.23 -13.67 10.69 84.03 0.90 -12.78 16 8 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 9 N -0.64 -34.65 3.70 -729.23 -2.70 -37.34 16 10 C 0.13 5.58 8.33 86.30 0.72 6.30 16 11 C 0.08 3.13 1.21 -10.49 -0.01 3.11 16 12 C 0.16 8.03 6.56 86.31 0.57 8.60 16 13 C 0.11 3.45 5.78 86.18 0.50 3.95 16 14 N -0.62 -16.66 3.03 -818.71 -2.48 -19.14 16 15 C 0.51 14.31 7.71 87.66 0.68 14.99 16 16 O -0.59 -22.61 15.48 -3.04 -0.05 -22.65 16 17 C -0.13 -2.19 4.07 29.85 0.12 -2.07 16 18 C -0.09 -1.80 4.49 30.59 0.14 -1.67 16 19 C -0.07 -1.02 5.34 29.85 0.16 -0.86 16 20 C -0.09 -1.67 5.13 -19.87 -0.10 -1.77 16 21 C -0.13 -2.14 9.70 22.27 0.22 -1.92 16 22 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 23 C -0.14 -2.23 10.05 22.27 0.22 -2.00 16 24 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 25 C -0.14 -2.60 9.70 22.27 0.22 -2.38 16 26 C 0.08 1.45 6.47 86.19 0.56 2.01 16 27 C 0.04 0.96 6.87 71.91 0.49 1.45 16 28 O -0.36 -13.37 10.52 -148.98 -1.57 -14.93 16 29 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 30 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.07 2.62 8.09 -2.38 -0.02 2.60 16 32 H 0.01 0.37 7.94 -2.39 -0.02 0.35 16 33 H 0.04 2.10 6.50 -2.39 -0.02 2.08 16 34 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.08 2.89 6.91 -2.39 -0.02 2.88 16 36 H 0.11 1.56 7.68 -2.39 -0.02 1.54 16 37 H 0.13 1.22 8.00 -2.39 -0.02 1.20 16 38 H 0.06 1.27 8.10 -2.38 -0.02 1.25 16 39 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 40 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 41 H 0.10 0.91 8.09 -2.38 -0.02 0.89 16 42 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 43 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 46 H 0.12 2.17 8.06 -2.91 -0.02 2.14 16 47 H 0.13 1.37 6.03 -2.39 -0.01 1.36 16 48 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 49 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 50 H 0.03 1.01 7.19 -2.39 -0.02 1.00 16 Total: -1.00 -83.36 402.54 2.68 -80.68 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.92 Total: 16.85 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 6.28 Total: 7.28 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -4.93 Total: -116.61 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -1.61 Total: -37.59 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -83.36 2.68 -80.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673514179.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.402 kcal (2) G-P(sol) polarization free energy of solvation -83.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds