Wall clock time and date at job start Wed Apr 1 2020 02:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 119.99783 * 2 1 4 4 H 1.48504 * 109.47428 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47189 * 119.99991 * 3 2 1 6 6 H 1.48508 * 109.46998 * 239.99934 * 3 2 1 7 7 C 1.38811 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00198 * 195.25489 * 7 2 1 9 9 N 1.36936 * 120.00169 * 15.24787 * 7 2 1 10 10 C 1.47241 * 121.33280 * 41.30929 * 9 7 2 11 11 C 1.52784 * 107.90269 * 115.76530 * 10 9 7 12 12 C 1.50608 * 110.85433 * 47.49224 * 11 10 9 13 13 C 1.38980 * 117.62309 * 159.93973 * 12 11 10 14 14 C 1.37906 * 120.58036 * 179.54297 * 13 12 11 15 15 C 1.38259 * 119.83035 * 359.92002 * 14 13 12 16 16 C 1.37963 * 119.71631 * 0.23908 * 15 14 13 17 17 C 1.37663 * 122.85883 * 339.82955 * 12 11 10 18 18 C 1.46682 * 121.33967 * 221.02851 * 9 7 2 19 19 H 1.08996 * 109.43255 * 104.33095 * 18 9 7 20 20 C 1.52993 * 109.43678 * 344.45464 * 18 9 7 21 21 N 1.46505 * 109.47154 * 57.81565 * 20 18 9 22 22 C 1.34778 * 120.00053 * 185.15508 * 21 20 18 23 23 O 1.21280 * 120.00051 * 359.97438 * 22 21 20 24 24 C 1.50698 * 119.99705 * 180.02562 * 22 21 20 25 25 C 1.53005 * 109.46861 * 179.97438 * 24 22 21 26 26 H 1.09004 * 110.74957 * 54.30080 * 25 24 22 27 27 C 1.55302 * 110.84579 * 177.76729 * 25 24 22 28 28 C 1.55211 * 100.82492 * 152.18157 * 27 25 24 29 29 O 1.43644 * 105.25631 * 323.81495 * 28 27 25 30 30 C 1.43239 * 109.97433 * 24.28993 * 29 28 27 31 31 H 0.97005 * 119.99871 * 179.87448 * 1 2 3 32 32 H 1.08997 * 109.77289 * 235.36806 * 10 9 7 33 33 H 1.08999 * 109.77220 * 356.10998 * 10 9 7 34 34 H 1.08999 * 109.19838 * 167.84260 * 11 10 9 35 35 H 1.09004 * 109.20348 * 287.18436 * 11 10 9 36 36 H 1.08004 * 119.70714 * 359.55609 * 13 12 11 37 37 H 1.07997 * 120.08636 * 179.90607 * 14 13 12 38 38 H 1.08000 * 120.14704 * 180.25945 * 15 14 13 39 39 H 1.08003 * 119.74882 * 180.02562 * 16 15 14 40 40 H 1.08999 * 109.47293 * 177.81385 * 20 18 9 41 41 H 1.09006 * 109.47325 * 297.81672 * 20 18 9 42 42 H 0.97002 * 119.99939 * 5.14588 * 21 20 18 43 43 H 1.09003 * 109.47149 * 299.99307 * 24 22 21 44 44 H 1.09001 * 109.47839 * 59.99552 * 24 22 21 45 45 H 1.08995 * 111.12818 * 270.24289 * 27 25 24 46 46 H 1.09003 * 111.12900 * 34.40667 * 27 25 24 47 47 H 1.09005 * 110.37004 * 204.80416 * 28 27 25 48 48 H 1.08998 * 110.21095 * 82.75408 * 28 27 25 49 49 H 1.09003 * 109.82819 * 238.77284 * 30 29 28 50 50 H 1.08994 * 109.83241 * 117.79647 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6964 -1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0618 -1.2184 0.2466 9 7 1.3619 -2.3673 -0.3108 10 6 0.3846 -2.4295 -1.4104 11 6 0.9373 -3.3734 -2.4771 12 6 1.4347 -4.6520 -1.8559 13 6 1.5667 -5.7614 -2.6827 14 6 2.0258 -6.9605 -2.1797 15 6 2.3601 -7.0624 -0.8420 16 6 2.2270 -5.9638 -0.0182 17 6 1.7595 -4.7575 -0.5223 18 6 1.6174 -3.6050 0.4337 19 1 0.7852 -3.7997 1.1101 20 6 2.9066 -3.4549 1.2438 21 7 2.7853 -2.3074 2.1464 22 6 3.8419 -1.9178 2.8869 23 8 4.8930 -2.5176 2.8064 24 6 3.7170 -0.7378 3.8158 25 6 5.0494 -0.5096 4.5325 26 1 5.8624 -0.4092 3.8134 27 6 4.9731 0.7354 5.4577 28 6 6.0222 0.3603 6.5383 29 8 5.8933 -1.0596 6.7134 30 6 5.3378 -1.6498 5.5324 31 1 -0.4850 -0.8401 -0.0018 32 1 -0.5661 -2.8105 -1.0376 33 1 0.2427 -1.4353 -1.8342 34 1 0.1491 -3.6057 -3.1933 35 1 1.7610 -2.8840 -2.9969 36 1 1.3076 -5.6835 -3.7283 37 1 2.1238 -7.8179 -2.8290 38 1 2.7241 -7.9979 -0.4436 39 1 2.4883 -6.0426 1.0267 40 1 3.0765 -4.3598 1.8273 41 1 3.7454 -3.2969 0.5658 42 1 1.9446 -1.8278 2.2110 43 1 3.4563 0.1510 3.2411 44 1 2.9380 -0.9357 4.5521 45 1 5.2615 1.6404 4.9231 46 1 3.9802 0.8395 5.8953 47 1 5.8060 0.8778 7.4729 48 1 7.0252 0.6093 6.1919 49 1 4.4114 -2.1686 5.7789 50 1 6.0511 -2.3505 5.0985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674272489.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:03 Heat of formation + Delta-G solvation = -41.330433 kcal Electronic energy + Delta-G solvation = -31195.545708 eV Core-core repulsion = 27187.644096 eV Total energy + Delta-G solvation = -4007.901613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.97518 -39.56439 -38.50281 -36.54237 -34.29987 -33.34432 -32.68386 -32.10124 -29.93697 -29.77667 -28.97137 -27.32469 -25.96202 -24.54505 -22.78220 -22.45896 -22.08879 -21.21770 -20.60653 -19.63508 -19.07072 -17.42156 -16.80863 -16.41388 -16.01929 -15.86512 -15.64124 -15.29506 -14.81980 -14.71112 -14.44623 -14.12718 -13.83208 -13.72203 -13.61688 -13.16361 -13.08312 -12.85530 -12.75151 -12.60006 -12.18198 -12.14631 -11.87254 -11.59097 -11.46502 -11.35837 -11.22418 -11.15519 -10.89481 -10.83892 -10.73246 -10.65242 -10.34001 -10.21373 -10.04225 -9.49670 -9.38970 -9.22801 -8.68035 -8.46728 -8.20644 -8.16244 -6.93763 -6.20684 -3.59149 1.67264 1.71127 3.20155 3.30864 3.38205 3.54155 3.76436 3.97158 4.07967 4.35248 4.51332 4.80776 4.93929 4.98833 5.13170 5.15953 5.18982 5.21100 5.25730 5.29851 5.35309 5.41404 5.57531 5.60248 5.68749 5.70189 5.73768 5.77367 5.85437 5.88050 5.92572 6.01845 6.02805 6.06763 6.13215 6.15459 6.24769 6.31764 6.36134 6.46237 6.62650 6.71045 6.76991 6.86351 6.96246 7.03764 7.09586 7.17679 7.34902 7.98280 8.24417 8.42239 8.85831 8.88023 9.61015 10.12898 11.03067 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010821 B = 0.003765 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.831375 B = 7434.622013 C = 9630.534240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.014 4.014 3 Si 1.064 2.936 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.346 4.346 8 H 0.059 0.941 9 N -0.592 5.592 10 C 0.147 3.853 11 C -0.103 4.103 12 C -0.051 4.051 13 C -0.130 4.130 14 C -0.129 4.129 15 C -0.132 4.132 16 C -0.119 4.119 17 C -0.078 4.078 18 C 0.196 3.804 19 H 0.042 0.958 20 C 0.143 3.857 21 N -0.689 5.689 22 C 0.506 3.494 23 O -0.566 6.566 24 C -0.133 4.133 25 C -0.102 4.102 26 H 0.092 0.908 27 C -0.155 4.155 28 C 0.052 3.948 29 O -0.391 6.391 30 C 0.062 3.938 31 H 0.272 0.728 32 H 0.025 0.975 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.415 0.585 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.058 0.942 49 H 0.065 0.935 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 -4.464 4.053 7.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.218 4.218 3 Si 0.894 3.106 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.475 4.475 8 H 0.077 0.923 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.141 4.141 12 C -0.051 4.051 13 C -0.148 4.148 14 C -0.147 4.147 15 C -0.150 4.150 16 C -0.138 4.138 17 C -0.080 4.080 18 C 0.089 3.911 19 H 0.060 0.940 20 C 0.018 3.982 21 N -0.340 5.340 22 C 0.292 3.708 23 O -0.447 6.447 24 C -0.173 4.173 25 C -0.121 4.121 26 H 0.111 0.889 27 C -0.193 4.193 28 C -0.025 4.025 29 O -0.311 6.311 30 C -0.014 4.014 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.254 0.746 43 H 0.119 0.881 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.100 0.900 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.167 -3.296 4.191 6.767 hybrid contribution -0.284 -1.459 -0.546 1.584 sum 3.883 -4.755 3.645 7.140 Atomic orbital electron populations 1.70801 1.06429 1.30742 1.47142 1.26062 0.96764 1.01488 0.97517 0.83513 0.74688 0.75855 0.76574 1.20938 1.21655 1.21883 1.19911 0.93533 0.85169 1.48902 0.92341 1.44013 1.49316 1.05297 1.33017 1.21011 0.91039 0.98112 0.87738 1.21059 1.00237 0.93749 0.99105 1.19641 0.97442 0.95235 0.92811 1.21189 1.01255 0.93050 0.99306 1.20939 1.00707 0.97441 0.95579 1.20950 1.01676 0.98305 0.94074 1.21149 1.00161 0.92669 0.99798 1.20087 0.98100 0.95306 0.94463 1.19476 0.94778 0.86127 0.90691 0.94048 1.21196 0.97982 0.87553 0.91465 1.46089 1.15271 1.32157 1.40517 1.20440 0.83919 0.85244 0.81189 1.90627 1.28489 1.57109 1.68487 1.21654 0.98085 0.98700 0.98841 1.22435 0.98172 0.94174 0.97333 0.88947 1.23402 1.00402 0.98562 0.96894 1.23361 0.98236 0.82075 0.98789 1.88368 1.84695 1.19958 1.38072 1.23189 0.98728 0.95453 0.84058 0.91607 0.95653 0.90103 0.92158 0.90974 0.86763 0.86789 0.86639 0.86356 0.92719 0.91621 0.74627 0.88053 0.89063 0.89715 0.90130 0.90045 0.92403 0.91695 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.09 12.79 55.49 0.71 -23.38 16 2 C -0.01 -0.35 4.94 -17.43 -0.09 -0.43 16 3 Si 1.06 22.90 29.94 -169.99 -5.09 17.81 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -5.80 7.11 56.52 0.40 -5.39 16 6 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.35 -8.21 6.52 -15.06 -0.10 -8.31 16 8 H 0.06 1.47 6.20 -52.48 -0.33 1.14 16 9 N -0.59 -12.97 2.67 -166.55 -0.44 -13.41 16 10 C 0.15 3.07 4.69 -3.75 -0.02 3.06 16 11 C -0.10 -1.85 5.87 -28.04 -0.16 -2.02 16 12 C -0.05 -0.90 5.76 -104.60 -0.60 -1.50 16 13 C -0.13 -1.97 9.59 -39.43 -0.38 -2.35 16 14 C -0.13 -1.77 10.04 -39.70 -0.40 -2.17 16 15 C -0.13 -1.85 10.05 -39.67 -0.40 -2.24 16 16 C -0.12 -1.87 9.07 -39.46 -0.36 -2.22 16 17 C -0.08 -1.39 5.42 -104.75 -0.57 -1.96 16 18 C 0.20 3.78 3.06 -69.13 -0.21 3.57 16 19 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 20 C 0.14 2.68 4.13 -4.04 -0.02 2.67 16 21 N -0.69 -12.76 3.48 -60.29 -0.21 -12.97 16 22 C 0.51 9.11 7.64 -10.99 -0.08 9.02 16 23 O -0.57 -11.58 15.04 5.56 0.08 -11.49 16 24 C -0.13 -1.94 5.10 -27.88 -0.14 -2.08 16 25 C -0.10 -1.40 2.56 -88.67 -0.23 -1.62 16 26 H 0.09 1.37 7.97 -51.93 -0.41 0.96 16 27 C -0.15 -1.71 6.64 -24.34 -0.16 -1.87 16 28 C 0.05 0.58 7.78 38.33 0.30 0.88 16 29 O -0.39 -5.63 11.36 -35.23 -0.40 -6.03 16 30 C 0.06 0.89 6.52 37.88 0.25 1.14 16 31 H 0.27 7.21 6.41 -40.82 -0.26 6.95 16 32 H 0.03 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.08 1.88 6.56 -51.93 -0.34 1.54 16 34 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.11 1.50 8.05 -52.48 -0.42 1.08 16 37 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.12 1.68 6.73 -52.48 -0.35 1.33 16 40 H 0.05 0.95 6.71 -51.93 -0.35 0.60 16 41 H 0.07 1.41 7.91 -51.93 -0.41 1.00 16 42 H 0.42 7.98 7.10 -40.82 -0.29 7.69 16 43 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.09 1.15 8.01 -51.93 -0.42 0.74 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.91 7.72 -51.93 -0.40 0.51 16 50 H 0.08 1.20 7.83 -51.93 -0.41 0.79 16 LS Contribution 388.38 15.07 5.85 5.85 Total: -1.00 -28.14 388.38 -10.69 -38.83 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -7.83 Total: 13.25 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -3.37 Total: -8.46 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.06 Total: -49.76 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.32 Total: -17.52 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.09 Total: 17.81 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.14 -10.69 -38.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674272489.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.495 kcal (2) G-P(sol) polarization free energy of solvation -28.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds