Wall clock time and date at job start Wed Apr 1 2020 02:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 119.99783 * 2 1 4 4 H 1.48504 * 109.47428 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47189 * 119.99991 * 3 2 1 6 6 H 1.48508 * 109.46998 * 239.99934 * 3 2 1 7 7 C 1.38811 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00198 * 195.25489 * 7 2 1 9 9 N 1.36936 * 120.00169 * 15.24787 * 7 2 1 10 10 C 1.47241 * 121.33280 * 41.30929 * 9 7 2 11 11 C 1.52784 * 107.90269 * 115.76530 * 10 9 7 12 12 C 1.50608 * 110.85433 * 47.49224 * 11 10 9 13 13 C 1.38980 * 117.62309 * 159.93973 * 12 11 10 14 14 C 1.37906 * 120.58036 * 179.54297 * 13 12 11 15 15 C 1.38259 * 119.83035 * 359.92002 * 14 13 12 16 16 C 1.37963 * 119.71631 * 0.23908 * 15 14 13 17 17 C 1.37663 * 122.85883 * 339.82955 * 12 11 10 18 18 C 1.46682 * 121.33967 * 221.02851 * 9 7 2 19 19 H 1.08996 * 109.43255 * 104.33095 * 18 9 7 20 20 C 1.52993 * 109.43678 * 344.45464 * 18 9 7 21 21 N 1.46505 * 109.47154 * 57.81565 * 20 18 9 22 22 C 1.34778 * 120.00053 * 185.15508 * 21 20 18 23 23 O 1.21280 * 120.00051 * 359.97438 * 22 21 20 24 24 C 1.50698 * 119.99705 * 180.02562 * 22 21 20 25 25 C 1.53005 * 109.46861 * 179.97438 * 24 22 21 26 26 H 1.09004 * 110.74957 * 54.30080 * 25 24 22 27 27 C 1.55302 * 110.84579 * 177.76729 * 25 24 22 28 28 C 1.55211 * 100.82492 * 152.18157 * 27 25 24 29 29 O 1.43644 * 105.25631 * 323.81495 * 28 27 25 30 30 C 1.43239 * 109.97433 * 24.28993 * 29 28 27 31 31 H 0.97005 * 119.99871 * 179.87448 * 1 2 3 32 32 H 1.08997 * 109.77289 * 235.36806 * 10 9 7 33 33 H 1.08999 * 109.77220 * 356.10998 * 10 9 7 34 34 H 1.08999 * 109.19838 * 167.84260 * 11 10 9 35 35 H 1.09004 * 109.20348 * 287.18436 * 11 10 9 36 36 H 1.08004 * 119.70714 * 359.55609 * 13 12 11 37 37 H 1.07997 * 120.08636 * 179.90607 * 14 13 12 38 38 H 1.08000 * 120.14704 * 180.25945 * 15 14 13 39 39 H 1.08003 * 119.74882 * 180.02562 * 16 15 14 40 40 H 1.08999 * 109.47293 * 177.81385 * 20 18 9 41 41 H 1.09006 * 109.47325 * 297.81672 * 20 18 9 42 42 H 0.97002 * 119.99939 * 5.14588 * 21 20 18 43 43 H 1.09003 * 109.47149 * 299.99307 * 24 22 21 44 44 H 1.09001 * 109.47839 * 59.99552 * 24 22 21 45 45 H 1.08995 * 111.12818 * 270.24289 * 27 25 24 46 46 H 1.09003 * 111.12900 * 34.40667 * 27 25 24 47 47 H 1.09005 * 110.37004 * 204.80416 * 28 27 25 48 48 H 1.08998 * 110.21095 * 82.75408 * 28 27 25 49 49 H 1.09003 * 109.82819 * 238.77284 * 30 29 28 50 50 H 1.08994 * 109.83241 * 117.79647 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6964 -1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0618 -1.2184 0.2466 9 7 1.3619 -2.3673 -0.3108 10 6 0.3846 -2.4295 -1.4104 11 6 0.9373 -3.3734 -2.4771 12 6 1.4347 -4.6520 -1.8559 13 6 1.5667 -5.7614 -2.6827 14 6 2.0258 -6.9605 -2.1797 15 6 2.3601 -7.0624 -0.8420 16 6 2.2270 -5.9638 -0.0182 17 6 1.7595 -4.7575 -0.5223 18 6 1.6174 -3.6050 0.4337 19 1 0.7852 -3.7997 1.1101 20 6 2.9066 -3.4549 1.2438 21 7 2.7853 -2.3074 2.1464 22 6 3.8419 -1.9178 2.8869 23 8 4.8930 -2.5176 2.8064 24 6 3.7170 -0.7378 3.8158 25 6 5.0494 -0.5096 4.5325 26 1 5.8624 -0.4092 3.8134 27 6 4.9731 0.7354 5.4577 28 6 6.0222 0.3603 6.5383 29 8 5.8933 -1.0596 6.7134 30 6 5.3378 -1.6498 5.5324 31 1 -0.4850 -0.8401 -0.0018 32 1 -0.5661 -2.8105 -1.0376 33 1 0.2427 -1.4353 -1.8342 34 1 0.1491 -3.6057 -3.1933 35 1 1.7610 -2.8840 -2.9969 36 1 1.3076 -5.6835 -3.7283 37 1 2.1238 -7.8179 -2.8290 38 1 2.7241 -7.9979 -0.4436 39 1 2.4883 -6.0426 1.0267 40 1 3.0765 -4.3598 1.8273 41 1 3.7454 -3.2969 0.5658 42 1 1.9446 -1.8278 2.2110 43 1 3.4563 0.1510 3.2411 44 1 2.9380 -0.9357 4.5521 45 1 5.2615 1.6404 4.9231 46 1 3.9802 0.8395 5.8953 47 1 5.8060 0.8778 7.4729 48 1 7.0252 0.6093 6.1919 49 1 4.4114 -2.1686 5.7789 50 1 6.0511 -2.3505 5.0985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674272489.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:02 Heat of formation + Delta-G solvation = -56.008766 kcal Electronic energy + Delta-G solvation = -31196.182208 eV Core-core repulsion = 27187.644096 eV Total energy + Delta-G solvation = -4008.538113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.34548 -40.78194 -39.76939 -38.05072 -35.82711 -34.52612 -34.32853 -33.48558 -31.33941 -30.95003 -30.28146 -28.66338 -27.44122 -26.13699 -24.15678 -23.66157 -23.39979 -22.47765 -21.87938 -21.00749 -20.58009 -19.07734 -18.02982 -17.70725 -17.42291 -17.06986 -17.05667 -16.59501 -16.09858 -16.01723 -15.72955 -15.53948 -15.47246 -15.15974 -15.03847 -14.50564 -14.31486 -14.14530 -14.00482 -13.93639 -13.64157 -13.47755 -13.18986 -13.06379 -12.80348 -12.65370 -12.59062 -12.45533 -12.29985 -12.17421 -11.96369 -11.80930 -11.77884 -11.71080 -11.55280 -11.16065 -10.77889 -10.52150 -10.46864 -9.79942 -9.67015 -9.44021 -8.78003 -8.11443 -5.51213 0.47554 0.49631 1.55901 1.63326 1.76417 1.81769 2.38645 2.59788 2.86305 2.96413 3.30305 3.39745 3.46694 3.74742 3.87271 3.89974 3.91652 4.01873 4.03948 4.17381 4.24602 4.27163 4.31260 4.35423 4.40312 4.42789 4.46588 4.59982 4.62647 4.69209 4.75324 4.78144 4.80756 4.84266 4.91729 4.95930 5.00857 5.07600 5.11737 5.13829 5.15761 5.27000 5.34236 5.57428 5.60640 5.63681 5.83215 6.03336 6.04784 6.15677 6.46981 6.75314 7.04134 7.38398 7.74715 8.28802 9.07976 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010821 B = 0.003765 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.831375 B = 7434.622013 C = 9630.534240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.051 4.051 3 Si 1.097 2.903 4 H -0.292 1.292 5 H -0.263 1.263 6 H -0.295 1.295 7 C -0.330 4.330 8 H 0.045 0.955 9 N -0.606 5.606 10 C 0.152 3.848 11 C -0.092 4.092 12 C -0.078 4.078 13 C -0.132 4.132 14 C -0.122 4.122 15 C -0.127 4.127 16 C -0.127 4.127 17 C -0.103 4.103 18 C 0.201 3.799 19 H 0.035 0.965 20 C 0.153 3.847 21 N -0.692 5.692 22 C 0.502 3.498 23 O -0.593 6.593 24 C -0.125 4.125 25 C -0.102 4.102 26 H 0.076 0.924 27 C -0.146 4.146 28 C 0.045 3.955 29 O -0.409 6.409 30 C 0.066 3.934 31 H 0.261 0.739 32 H 0.019 0.981 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.135 0.865 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.128 0.872 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.412 0.588 43 H 0.103 0.897 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.066 0.934 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.155 -5.511 4.388 8.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.250 4.250 3 Si 0.923 3.077 4 H -0.218 1.218 5 H -0.188 1.188 6 H -0.222 1.222 7 C -0.460 4.460 8 H 0.062 0.938 9 N -0.331 5.331 10 C 0.026 3.974 11 C -0.131 4.131 12 C -0.078 4.078 13 C -0.150 4.150 14 C -0.140 4.140 15 C -0.145 4.145 16 C -0.146 4.146 17 C -0.105 4.105 18 C 0.094 3.906 19 H 0.052 0.948 20 C 0.028 3.972 21 N -0.342 5.342 22 C 0.290 3.710 23 O -0.475 6.475 24 C -0.165 4.165 25 C -0.121 4.121 26 H 0.095 0.905 27 C -0.183 4.183 28 C -0.030 4.030 29 O -0.329 6.329 30 C -0.011 4.011 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.153 0.847 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.145 0.855 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.250 0.750 43 H 0.121 0.879 44 H 0.132 0.868 45 H 0.119 0.881 46 H 0.111 0.889 47 H 0.123 0.877 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.762 -4.363 4.536 7.892 hybrid contribution -0.422 -1.265 -0.681 1.497 sum 4.341 -5.627 3.854 8.085 Atomic orbital electron populations 1.70889 1.07247 1.30037 1.49842 1.26944 0.96686 1.03856 0.97532 0.83065 0.74011 0.73092 0.77485 1.21818 1.18788 1.22218 1.19842 0.92771 0.85972 1.47383 0.93754 1.44164 1.49218 1.05783 1.33916 1.20856 0.90898 0.97270 0.88351 1.20880 1.00288 0.93566 0.98335 1.19710 0.99067 0.95773 0.93243 1.21426 1.00786 0.92695 1.00058 1.21378 0.98746 0.97879 0.95969 1.21361 1.00211 0.98804 0.94077 1.21305 1.00080 0.92460 1.00716 1.20042 1.00270 0.95585 0.94603 1.19453 0.94449 0.85734 0.90915 0.94775 1.21062 0.96619 0.88351 0.91141 1.46122 1.15342 1.32146 1.40576 1.21076 0.83098 0.85755 0.81104 1.90612 1.29356 1.58222 1.69353 1.21668 0.99449 0.96821 0.98569 1.22390 0.96971 0.95549 0.97204 0.90540 1.23407 1.01148 0.97640 0.96138 1.23604 0.98784 0.80534 1.00107 1.88348 1.84784 1.21884 1.37895 1.23059 0.98147 0.95499 0.84360 0.92809 0.96273 0.93023 0.89822 0.92359 0.84679 0.83233 0.83426 0.85452 0.91186 0.94611 0.75026 0.87914 0.86766 0.88119 0.88910 0.87735 0.91733 0.91560 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -51.06 12.79 21.65 0.28 -50.79 16 2 C -0.05 -2.57 4.94 84.86 0.42 -2.15 16 3 Si 1.10 46.49 29.94 68.60 2.05 48.55 16 4 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 6 H -0.30 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.33 -16.12 6.52 84.03 0.55 -15.57 16 8 H 0.04 2.30 6.20 -2.91 -0.02 2.28 16 9 N -0.61 -27.47 2.67 -680.83 -1.82 -29.29 16 10 C 0.15 6.61 4.69 86.17 0.40 7.02 16 11 C -0.09 -3.35 5.87 29.75 0.17 -3.18 16 12 C -0.08 -2.69 5.76 -19.85 -0.11 -2.81 16 13 C -0.13 -3.67 9.59 22.37 0.21 -3.46 16 14 C -0.12 -2.90 10.04 22.20 0.22 -2.68 16 15 C -0.13 -3.12 10.05 22.21 0.22 -2.90 16 16 C -0.13 -3.79 9.07 22.35 0.20 -3.59 16 17 C -0.10 -3.68 5.42 -19.95 -0.11 -3.79 16 18 C 0.20 7.93 3.06 44.12 0.13 8.07 16 19 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 20 C 0.15 5.90 4.13 86.38 0.36 6.26 16 21 N -0.69 -26.10 3.48 -463.06 -1.61 -27.71 16 22 C 0.50 18.18 7.64 87.66 0.67 18.85 16 23 O -0.59 -24.67 15.04 -3.03 -0.05 -24.71 16 24 C -0.13 -3.53 5.10 29.85 0.15 -3.38 16 25 C -0.10 -2.69 2.56 -9.53 -0.02 -2.71 16 26 H 0.08 2.25 7.97 -2.38 -0.02 2.24 16 27 C -0.15 -2.85 6.64 32.14 0.21 -2.64 16 28 C 0.05 0.91 7.78 72.74 0.57 1.48 16 29 O -0.41 -11.30 11.36 -148.98 -1.69 -12.99 16 30 C 0.07 1.86 6.52 72.45 0.47 2.34 16 31 H 0.26 14.40 6.41 -92.70 -0.59 13.81 16 32 H 0.02 0.84 8.09 -2.39 -0.02 0.82 16 33 H 0.05 2.53 6.56 -2.39 -0.02 2.51 16 34 H 0.08 2.59 8.10 -2.39 -0.02 2.57 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.14 3.13 8.05 -2.91 -0.02 3.10 16 37 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 39 H 0.13 3.45 6.73 -2.91 -0.02 3.43 16 40 H 0.07 2.45 6.71 -2.39 -0.02 2.44 16 41 H 0.04 1.59 7.91 -2.38 -0.02 1.57 16 42 H 0.41 16.17 7.10 -92.71 -0.66 15.51 16 43 H 0.10 2.91 8.14 -2.39 -0.02 2.90 16 44 H 0.11 2.69 8.01 -2.39 -0.02 2.67 16 45 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.09 1.61 8.04 -2.39 -0.02 1.59 16 47 H 0.10 1.62 8.14 -2.38 -0.02 1.61 16 48 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 49 H 0.07 1.83 7.72 -2.39 -0.02 1.81 16 50 H 0.06 1.79 7.83 -2.39 -0.02 1.77 16 Total: -1.00 -62.98 388.38 2.35 -60.63 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: 0.46 Total: 41.14 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 4.73 Total: -4.83 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -3.15 Total: -107.78 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -1.74 Total: -37.70 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.05 Total: 48.55 kcal Total: -62.98 2.35 -60.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674272489.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.618 kcal (2) G-P(sol) polarization free energy of solvation -62.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds