Wall clock time and date at job start Wed Apr 1 2020 02:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99690 * 2 1 4 4 H 1.48507 * 109.46901 * 269.99612 * 3 2 1 5 5 H 1.48497 * 109.47323 * 29.99901 * 3 2 1 6 6 H 1.48503 * 109.47109 * 149.99866 * 3 2 1 7 7 C 1.38815 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49241 * 179.97438 * 9 7 2 11 11 C 1.53943 * 86.11561 * 155.35528 * 10 9 7 12 12 C 1.53000 * 113.74707 * 269.15341 * 11 10 9 13 13 C 1.52994 * 109.47421 * 172.99089 * 12 11 10 14 14 O 1.42908 * 109.47118 * 185.05326 * 13 12 11 15 15 N 1.46498 * 113.74308 * 137.95160 * 11 10 9 16 16 C 1.34781 * 119.99694 * 55.35183 * 15 11 10 17 17 O 1.21277 * 120.00136 * 4.95416 * 16 15 11 18 18 C 1.50702 * 119.99949 * 184.94761 * 16 15 11 19 19 C 1.50700 * 112.85019 * 315.81472 * 18 16 15 20 20 C 1.38245 * 119.99691 * 283.15013 * 19 18 16 21 21 C 1.38233 * 119.99747 * 179.78920 * 20 19 18 22 22 C 1.38240 * 119.99953 * 0.46476 * 21 20 19 23 23 C 1.38235 * 120.00029 * 359.76424 * 22 21 20 24 24 C 1.38230 * 120.00268 * 103.42311 * 19 18 16 25 25 C 1.53778 * 113.61176 * 184.61653 * 18 16 15 26 26 C 1.53777 * 87.08113 * 270.79768 * 25 18 16 27 27 C 1.53776 * 87.17572 * 334.52979 * 26 25 18 28 28 C 1.47580 * 134.48942 * 359.97438 * 9 7 2 29 29 H 0.96996 * 120.00616 * 0.02562 * 1 2 3 30 30 H 1.08995 * 113.76691 * 41.05948 * 10 9 7 31 31 H 1.08994 * 113.86628 * 269.67161 * 10 9 7 32 32 H 1.09001 * 109.46721 * 292.99617 * 12 11 10 33 33 H 1.09002 * 109.46769 * 52.98986 * 12 11 10 34 34 H 1.08994 * 109.47206 * 305.05735 * 13 12 11 35 35 H 1.08999 * 109.46968 * 65.05981 * 13 12 11 36 36 H 0.96696 * 113.99751 * 179.97438 * 14 13 12 37 37 H 0.96999 * 120.00495 * 235.35847 * 15 11 10 38 38 H 1.07992 * 119.99874 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.99992 * 180.24843 * 21 20 19 40 40 H 1.08000 * 119.99868 * 179.79209 * 22 21 20 41 41 H 1.07996 * 119.99752 * 179.97438 * 23 22 21 42 42 H 1.07996 * 119.99891 * 359.97438 * 24 19 18 43 43 H 1.09009 * 113.61151 * 156.25420 * 25 18 16 44 44 H 1.08997 * 113.69369 * 25.36373 * 25 18 16 45 45 H 1.09008 * 113.61290 * 89.11913 * 26 25 18 46 46 H 1.08998 * 113.61526 * 219.93285 * 26 25 18 47 47 H 1.08993 * 113.62105 * 140.02199 * 27 26 25 48 48 H 1.09007 * 113.60991 * 270.92221 * 27 26 25 49 49 H 1.09002 * 113.77347 * 90.34600 * 28 9 7 50 50 H 1.08994 * 113.77381 * 318.93788 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 1.7202 -3.8102 0.0005 11 6 0.3472 -4.0829 0.6410 12 6 0.3646 -4.0562 2.1707 13 6 -1.0673 -4.1631 2.6990 14 8 -1.0623 -4.0201 4.1209 15 7 -0.3332 -5.2613 0.0982 16 6 0.2848 -6.4591 0.1050 17 8 1.3661 -6.5805 0.6407 18 6 -0.3679 -7.6475 -0.5528 19 6 -1.8356 -7.7618 -0.2308 20 6 -2.2375 -8.2448 1.0006 21 6 -3.5838 -8.3455 1.2977 22 6 -4.5283 -7.9723 0.3598 23 6 -4.1265 -7.4938 -0.8733 24 6 -2.7801 -7.3890 -1.1687 25 6 0.4089 -8.9609 -0.3617 26 6 1.1732 -8.6042 -1.6476 27 6 -0.0542 -7.7726 -2.0558 28 6 -0.1033 -2.7574 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 2.5624 -4.0323 0.6557 31 1 1.8326 -4.2366 -0.9962 32 1 0.9525 -4.8956 2.5420 33 1 0.8093 -3.1216 2.5126 34 1 -1.6774 -3.3756 2.2567 35 1 -1.4809 -5.1359 2.4332 36 1 -1.9389 -4.0770 4.5249 37 1 -1.2285 -5.1796 -0.2662 38 1 -1.4996 -8.5405 1.7316 39 1 -3.8977 -8.7191 2.2612 40 1 -5.5802 -8.0542 0.5906 41 1 -4.8644 -7.2027 -1.6061 42 1 -2.4662 -7.0155 -2.1321 43 1 -0.2113 -9.8525 -0.4555 44 1 1.0358 -8.9732 0.5298 45 1 2.0674 -8.0059 -1.4723 46 1 1.3570 -9.4596 -2.2977 47 1 0.1989 -6.8248 -2.5309 48 1 -0.8006 -8.3399 -2.6119 49 1 -0.5272 -2.8731 -0.9970 50 1 -0.7168 -2.1391 0.6557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675086044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:18 Heat of formation + Delta-G solvation = 16.506680 kcal Electronic energy + Delta-G solvation = -31720.099273 eV Core-core repulsion = 27714.705666 eV Total energy + Delta-G solvation = -4005.393607 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.09426 -39.32447 -38.32435 -36.66509 -36.33797 -33.67135 -32.02731 -31.22162 -31.08601 -30.26968 -27.20352 -26.14557 -25.90228 -25.04282 -23.44873 -22.50038 -22.15037 -21.70018 -21.07608 -18.97719 -18.53778 -17.51221 -17.10461 -16.76919 -16.50609 -15.64250 -15.41630 -15.08958 -15.00348 -14.73088 -14.64751 -14.24890 -14.13303 -13.63401 -13.57952 -13.54768 -13.33318 -12.85021 -12.54879 -12.44892 -12.02297 -11.96249 -11.75974 -11.66591 -11.54242 -11.26147 -11.03707 -11.00006 -10.91690 -10.74221 -10.72128 -10.52769 -10.36662 -10.15690 -9.82988 -9.67415 -9.61404 -9.29619 -9.07599 -8.89505 -8.72793 -8.57132 -6.91741 -5.79488 -3.11386 1.15955 1.24214 2.85500 3.36037 3.40978 3.45622 3.47103 3.64498 4.33487 4.45899 4.48365 4.51311 4.54430 4.72321 4.81695 4.84837 4.93615 4.98870 5.18009 5.22208 5.30621 5.43588 5.46501 5.49957 5.55498 5.55758 5.63914 5.73048 5.80289 5.82783 5.84159 5.87956 5.96745 5.98172 6.02648 6.26709 6.34983 6.35742 6.37825 6.44189 6.49734 6.52437 6.67091 6.75915 6.82295 6.86761 7.13138 7.32992 7.49577 7.86374 7.91239 7.95647 8.56677 9.02517 9.68493 10.55096 11.38057 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.003494 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.550527 B = 8011.046720 C = 8684.798818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.220 4.220 8 H 0.082 0.918 9 N -0.604 5.604 10 C 0.134 3.866 11 C 0.122 3.878 12 C -0.093 4.093 13 C 0.083 3.917 14 O -0.574 6.574 15 N -0.708 5.708 16 C 0.542 3.458 17 O -0.530 6.530 18 C -0.072 4.072 19 C -0.066 4.066 20 C -0.107 4.107 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.110 4.110 26 C -0.138 4.138 27 C -0.120 4.120 28 C 0.167 3.833 29 H 0.254 0.746 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.036 0.964 36 H 0.371 0.629 37 H 0.396 0.604 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.091 0.909 49 H 0.030 0.970 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.977 -19.435 -1.197 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.347 4.347 8 H 0.100 0.900 9 N -0.331 5.331 10 C 0.007 3.993 11 C 0.036 3.964 12 C -0.131 4.131 13 C 0.006 3.994 14 O -0.378 6.378 15 N -0.359 5.359 16 C 0.326 3.674 17 O -0.406 6.406 18 C -0.075 4.075 19 C -0.067 4.067 20 C -0.125 4.125 21 C -0.136 4.136 22 C -0.141 4.141 23 C -0.135 4.135 24 C -0.132 4.132 25 C -0.148 4.148 26 C -0.176 4.176 27 C -0.158 4.158 28 C 0.041 3.959 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.217 0.783 37 H 0.229 0.771 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.110 0.890 49 H 0.047 0.953 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.475 -19.064 -0.917 20.883 hybrid contribution -0.820 0.920 -0.317 1.272 sum -9.295 -18.145 -1.234 20.424 Atomic orbital electron populations 1.69783 1.05018 1.25419 1.56730 1.24758 0.95682 0.97498 1.02286 0.86106 0.78732 0.83327 0.77540 1.21643 1.21602 1.20526 1.19008 0.90321 0.81558 1.43826 0.90010 1.45676 1.01872 0.99532 1.85986 1.22705 0.94304 0.85506 0.96778 1.22974 0.95945 0.84524 0.92976 1.21325 0.95375 1.03993 0.92452 1.22113 0.98364 0.98721 0.80237 1.86499 1.33860 1.96445 1.21040 1.46113 1.19592 1.08051 1.62108 1.19597 0.85242 0.83198 0.79319 1.90683 1.21230 1.84193 1.44466 1.21064 0.91794 0.96170 0.98454 1.19509 0.93359 0.99332 0.94464 1.21013 0.96023 0.99241 0.96227 1.21129 0.92953 1.00132 0.99367 1.21162 0.99448 0.99467 0.94005 1.21142 0.95793 0.99536 0.97022 1.21089 0.92687 0.99990 0.99447 1.22808 0.97881 0.94320 0.99783 1.22823 0.97671 1.00026 0.97062 1.22993 0.98630 1.01358 0.92796 1.22532 0.89031 0.87477 0.96878 0.93616 0.92978 0.94824 0.91353 0.89093 0.93399 0.94588 0.78316 0.77052 0.86139 0.86144 0.86235 0.85978 0.85676 0.89691 0.89904 0.89283 0.91248 0.90650 0.89017 0.95281 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 11.38 55.49 0.63 -26.20 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.22 -6.18 10.70 -15.06 -0.16 -6.35 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.83 16 9 N -0.60 -15.53 3.54 -177.72 -0.63 -16.16 16 10 C 0.13 2.95 7.05 -2.98 -0.02 2.93 16 11 C 0.12 2.35 0.69 -134.04 -0.09 2.26 16 12 C -0.09 -1.81 5.00 -26.73 -0.13 -1.95 16 13 C 0.08 1.38 6.77 37.15 0.25 1.64 16 14 O -0.57 -9.35 13.66 -35.23 -0.48 -9.83 16 15 N -0.71 -11.06 4.52 -49.07 -0.22 -11.29 16 16 C 0.54 8.32 6.41 -10.98 -0.07 8.25 16 17 O -0.53 -9.86 14.18 5.56 0.08 -9.79 16 18 C -0.07 -0.83 1.00 -155.86 -0.16 -0.99 16 19 C -0.07 -0.70 4.14 -104.62 -0.43 -1.14 16 20 C -0.11 -1.12 9.39 -39.58 -0.37 -1.49 16 21 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 22 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 24 C -0.11 -1.08 8.88 -39.59 -0.35 -1.44 16 25 C -0.11 -1.19 6.65 -25.92 -0.17 -1.37 16 26 C -0.14 -1.47 7.70 -25.92 -0.20 -1.67 16 27 C -0.12 -1.23 6.22 -25.78 -0.16 -1.39 16 28 C 0.17 3.81 6.69 -2.97 -0.02 3.79 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.05 1.19 8.10 -51.93 -0.42 0.77 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.38 7.59 -51.93 -0.39 0.99 16 33 H 0.09 2.06 8.02 -51.93 -0.42 1.65 16 34 H 0.05 0.81 7.45 -51.93 -0.39 0.42 16 35 H 0.04 0.55 7.84 -51.93 -0.41 0.14 16 36 H 0.37 4.06 9.12 45.56 0.42 4.47 16 37 H 0.40 5.49 8.03 -40.82 -0.33 5.16 16 38 H 0.12 1.27 8.03 -52.49 -0.42 0.85 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.13 1.05 7.00 -52.49 -0.37 0.69 16 43 H 0.08 0.78 8.09 -51.92 -0.42 0.36 16 44 H 0.08 1.02 7.50 -51.93 -0.39 0.64 16 45 H 0.09 1.12 7.90 -51.92 -0.41 0.71 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.84 8.10 -51.93 -0.42 0.41 16 48 H 0.09 0.77 7.42 -51.92 -0.39 0.38 16 49 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.08 2.02 6.56 -51.93 -0.34 1.68 16 LS Contribution 402.59 15.07 6.07 6.07 Total: -1.00 -32.94 402.59 -10.13 -43.07 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -7.18 Total: 10.45 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -3.38 Total: -3.51 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.22 Total: -53.64 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.40 Total: -19.61 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.94 -10.13 -43.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675086044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.579 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds