Wall clock time and date at job start Wed Apr 1 2020 02:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99690 * 2 1 4 4 H 1.48507 * 109.46901 * 269.99612 * 3 2 1 5 5 H 1.48497 * 109.47323 * 29.99901 * 3 2 1 6 6 H 1.48503 * 109.47109 * 149.99866 * 3 2 1 7 7 C 1.38815 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49241 * 179.97438 * 9 7 2 11 11 C 1.53943 * 86.11561 * 155.35528 * 10 9 7 12 12 C 1.53000 * 113.74707 * 269.15341 * 11 10 9 13 13 C 1.52994 * 109.47421 * 172.99089 * 12 11 10 14 14 O 1.42908 * 109.47118 * 185.05326 * 13 12 11 15 15 N 1.46498 * 113.74308 * 137.95160 * 11 10 9 16 16 C 1.34781 * 119.99694 * 55.35183 * 15 11 10 17 17 O 1.21277 * 120.00136 * 4.95416 * 16 15 11 18 18 C 1.50702 * 119.99949 * 184.94761 * 16 15 11 19 19 C 1.50700 * 112.85019 * 315.81472 * 18 16 15 20 20 C 1.38245 * 119.99691 * 283.15013 * 19 18 16 21 21 C 1.38233 * 119.99747 * 179.78920 * 20 19 18 22 22 C 1.38240 * 119.99953 * 0.46476 * 21 20 19 23 23 C 1.38235 * 120.00029 * 359.76424 * 22 21 20 24 24 C 1.38230 * 120.00268 * 103.42311 * 19 18 16 25 25 C 1.53778 * 113.61176 * 184.61653 * 18 16 15 26 26 C 1.53777 * 87.08113 * 270.79768 * 25 18 16 27 27 C 1.53776 * 87.17572 * 334.52979 * 26 25 18 28 28 C 1.47580 * 134.48942 * 359.97438 * 9 7 2 29 29 H 0.96996 * 120.00616 * 0.02562 * 1 2 3 30 30 H 1.08995 * 113.76691 * 41.05948 * 10 9 7 31 31 H 1.08994 * 113.86628 * 269.67161 * 10 9 7 32 32 H 1.09001 * 109.46721 * 292.99617 * 12 11 10 33 33 H 1.09002 * 109.46769 * 52.98986 * 12 11 10 34 34 H 1.08994 * 109.47206 * 305.05735 * 13 12 11 35 35 H 1.08999 * 109.46968 * 65.05981 * 13 12 11 36 36 H 0.96696 * 113.99751 * 179.97438 * 14 13 12 37 37 H 0.96999 * 120.00495 * 235.35847 * 15 11 10 38 38 H 1.07992 * 119.99874 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.99992 * 180.24843 * 21 20 19 40 40 H 1.08000 * 119.99868 * 179.79209 * 22 21 20 41 41 H 1.07996 * 119.99752 * 179.97438 * 23 22 21 42 42 H 1.07996 * 119.99891 * 359.97438 * 24 19 18 43 43 H 1.09009 * 113.61151 * 156.25420 * 25 18 16 44 44 H 1.08997 * 113.69369 * 25.36373 * 25 18 16 45 45 H 1.09008 * 113.61290 * 89.11913 * 26 25 18 46 46 H 1.08998 * 113.61526 * 219.93285 * 26 25 18 47 47 H 1.08993 * 113.62105 * 140.02199 * 27 26 25 48 48 H 1.09007 * 113.60991 * 270.92221 * 27 26 25 49 49 H 1.09002 * 113.77347 * 90.34600 * 28 9 7 50 50 H 1.08994 * 113.77381 * 318.93788 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 1.7202 -3.8102 0.0005 11 6 0.3472 -4.0829 0.6410 12 6 0.3646 -4.0562 2.1707 13 6 -1.0673 -4.1631 2.6990 14 8 -1.0623 -4.0201 4.1209 15 7 -0.3332 -5.2613 0.0982 16 6 0.2848 -6.4591 0.1050 17 8 1.3661 -6.5805 0.6407 18 6 -0.3679 -7.6475 -0.5528 19 6 -1.8356 -7.7618 -0.2308 20 6 -2.2375 -8.2448 1.0006 21 6 -3.5838 -8.3455 1.2977 22 6 -4.5283 -7.9723 0.3598 23 6 -4.1265 -7.4938 -0.8733 24 6 -2.7801 -7.3890 -1.1687 25 6 0.4089 -8.9609 -0.3617 26 6 1.1732 -8.6042 -1.6476 27 6 -0.0542 -7.7726 -2.0558 28 6 -0.1033 -2.7574 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 2.5624 -4.0323 0.6557 31 1 1.8326 -4.2366 -0.9962 32 1 0.9525 -4.8956 2.5420 33 1 0.8093 -3.1216 2.5126 34 1 -1.6774 -3.3756 2.2567 35 1 -1.4809 -5.1359 2.4332 36 1 -1.9389 -4.0770 4.5249 37 1 -1.2285 -5.1796 -0.2662 38 1 -1.4996 -8.5405 1.7316 39 1 -3.8977 -8.7191 2.2612 40 1 -5.5802 -8.0542 0.5906 41 1 -4.8644 -7.2027 -1.6061 42 1 -2.4662 -7.0155 -2.1321 43 1 -0.2113 -9.8525 -0.4555 44 1 1.0358 -8.9732 0.5298 45 1 2.0674 -8.0059 -1.4723 46 1 1.3570 -9.4596 -2.2977 47 1 0.1989 -6.8248 -2.5309 48 1 -0.8006 -8.3399 -2.6119 49 1 -0.5272 -2.8731 -0.9970 50 1 -0.7168 -2.1391 0.6557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675086044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:17 Heat of formation + Delta-G solvation = -5.068011 kcal Electronic energy + Delta-G solvation = -31721.034822 eV Core-core repulsion = 27714.705666 eV Total energy + Delta-G solvation = -4006.329156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.19445 -40.70506 -39.34434 -37.83464 -37.73580 -35.30849 -33.83587 -32.24029 -31.80605 -31.66850 -29.07747 -27.19960 -26.90749 -26.74051 -25.07320 -23.51301 -23.16553 -22.84803 -22.32444 -20.17134 -20.09393 -18.80367 -18.42655 -18.33222 -17.48453 -17.16946 -16.72898 -16.38556 -16.26688 -15.86685 -15.81603 -15.71863 -15.28878 -15.08638 -14.93102 -14.45052 -14.37915 -14.22743 -13.72311 -13.63078 -13.42760 -13.35287 -13.18770 -12.93803 -12.84692 -12.76495 -12.58710 -12.46585 -12.27768 -12.08664 -11.95775 -11.90936 -11.74336 -11.38627 -11.32122 -11.22239 -10.99646 -10.90922 -10.70372 -10.09359 -9.76008 -9.53593 -8.98836 -7.94523 -5.28269 0.44659 0.55788 1.45079 1.46758 1.55484 1.62724 2.07730 2.47979 2.90622 3.11066 3.24508 3.35862 3.47610 3.54784 3.62547 3.70615 3.82606 3.89951 4.09458 4.19942 4.22468 4.25472 4.26666 4.36139 4.44404 4.50214 4.67031 4.67920 4.71047 4.75150 4.79614 4.81918 4.82981 4.97712 5.02199 5.08371 5.09390 5.10599 5.13089 5.18119 5.19403 5.22055 5.44367 5.46333 5.64637 5.68604 5.69649 5.72394 5.87184 6.15550 6.59538 6.87455 6.88478 7.29307 7.54767 8.47834 9.22262 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.003494 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.550527 B = 8011.046720 C = 8684.798818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.055 4.055 3 Si 0.978 3.022 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.629 5.629 10 C 0.133 3.867 11 C 0.154 3.846 12 C -0.087 4.087 13 C 0.096 3.904 14 O -0.591 6.591 15 N -0.700 5.700 16 C 0.541 3.459 17 O -0.565 6.565 18 C -0.067 4.067 19 C -0.077 4.077 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.105 4.105 26 C -0.140 4.140 27 C -0.111 4.111 28 C 0.174 3.826 29 H 0.252 0.748 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.396 0.604 37 H 0.408 0.592 38 H 0.112 0.888 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.107 0.893 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.065 0.935 48 H 0.119 0.881 49 H 0.031 0.969 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.982 -20.776 -1.922 24.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.249 4.249 3 Si 0.806 3.194 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.369 4.369 8 H 0.097 0.903 9 N -0.356 5.356 10 C 0.007 3.993 11 C 0.066 3.934 12 C -0.126 4.126 13 C 0.018 3.982 14 O -0.399 6.399 15 N -0.351 5.351 16 C 0.328 3.672 17 O -0.444 6.444 18 C -0.070 4.070 19 C -0.077 4.077 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.177 4.177 27 C -0.148 4.148 28 C 0.048 3.952 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.246 0.754 37 H 0.244 0.756 38 H 0.130 0.870 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.154 0.846 43 H 0.126 0.874 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.084 0.916 48 H 0.138 0.862 49 H 0.048 0.952 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.513 -20.443 -1.643 23.046 hybrid contribution -0.208 1.273 -0.052 1.291 sum -10.721 -19.170 -1.696 22.030 Atomic orbital electron populations 1.69938 1.06165 1.25888 1.57458 1.25537 0.96620 1.00470 1.02238 0.85100 0.77681 0.79107 0.77552 1.21086 1.21599 1.19777 1.19321 0.90691 0.82983 1.43866 0.90317 1.45946 1.03332 1.00142 1.86199 1.22738 0.95596 0.84072 0.96879 1.22243 0.93826 0.84711 0.92596 1.21188 0.97327 1.01507 0.92555 1.21896 0.95904 0.99711 0.80685 1.86439 1.36347 1.96503 1.20595 1.45884 1.19988 1.07138 1.62118 1.20284 0.84703 0.83749 0.78491 1.90673 1.22950 1.84796 1.45937 1.20928 0.92581 0.94363 0.99158 1.19405 0.92491 1.00733 0.95087 1.21071 0.96652 0.99989 0.96189 1.21351 0.92489 0.99924 1.00308 1.21481 1.00502 0.98422 0.93705 1.21440 0.95870 0.98889 0.97562 1.21249 0.92936 0.99736 0.99656 1.22824 0.97757 0.94761 0.98960 1.22789 0.96825 1.00592 0.97517 1.23036 0.98894 1.01182 0.91706 1.22392 0.87471 0.88732 0.96607 0.93923 0.94243 0.94488 0.92240 0.92791 0.93564 0.92482 0.75412 0.75565 0.86961 0.84658 0.84106 0.83975 0.84636 0.87418 0.91991 0.92020 0.88914 0.91617 0.86235 0.95158 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.95 11.38 21.65 0.25 -55.71 16 2 C -0.05 -3.13 5.50 84.86 0.47 -2.67 16 3 Si 0.98 46.13 29.55 68.60 2.03 48.15 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.24 -13.90 10.70 84.03 0.90 -13.01 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 9 N -0.63 -33.41 3.54 -716.20 -2.54 -35.95 16 10 C 0.13 6.11 7.05 86.48 0.61 6.72 16 11 C 0.15 6.06 0.69 5.36 0.00 6.06 16 12 C -0.09 -3.49 5.00 30.59 0.15 -3.34 16 13 C 0.10 3.14 6.77 71.98 0.49 3.62 16 14 O -0.59 -18.69 13.66 -148.98 -2.04 -20.73 16 15 N -0.70 -21.68 4.52 -427.56 -1.93 -23.61 16 16 C 0.54 16.56 6.41 87.66 0.56 17.12 16 17 O -0.57 -21.60 14.18 -3.02 -0.04 -21.65 16 18 C -0.07 -1.48 1.00 -53.06 -0.05 -1.53 16 19 C -0.08 -1.47 4.14 -19.86 -0.08 -1.55 16 20 C -0.12 -2.31 9.39 22.27 0.21 -2.10 16 21 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 22 C -0.12 -1.71 10.05 22.27 0.22 -1.48 16 23 C -0.12 -1.68 10.05 22.27 0.22 -1.46 16 24 C -0.12 -1.90 8.88 22.27 0.20 -1.70 16 25 C -0.11 -2.17 6.65 31.12 0.21 -1.96 16 26 C -0.14 -2.81 7.70 31.12 0.24 -2.57 16 27 C -0.11 -2.05 6.22 31.21 0.19 -1.85 16 28 C 0.17 8.12 6.69 86.48 0.58 8.69 16 29 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 2.48 7.59 -2.39 -0.02 2.47 16 33 H 0.05 2.56 8.02 -2.39 -0.02 2.54 16 34 H 0.05 1.54 7.45 -2.39 -0.02 1.52 16 35 H 0.06 1.64 7.84 -2.39 -0.02 1.62 16 36 H 0.40 7.93 9.12 -74.06 -0.68 7.25 16 37 H 0.41 10.85 8.03 -92.71 -0.74 10.10 16 38 H 0.11 2.27 8.03 -2.91 -0.02 2.24 16 39 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 40 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 41 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 42 H 0.14 1.85 7.00 -2.91 -0.02 1.83 16 43 H 0.11 1.73 8.09 -2.38 -0.02 1.71 16 44 H 0.06 1.54 7.50 -2.39 -0.02 1.53 16 45 H 0.06 1.58 7.90 -2.38 -0.02 1.56 16 46 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 48 H 0.12 1.59 7.42 -2.38 -0.02 1.57 16 49 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.06 3.00 6.56 -2.39 -0.02 2.99 16 Total: -1.00 -72.85 402.59 0.60 -72.24 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -0.47 Total: 31.96 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 5.34 Total: 5.28 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -4.22 Total: -115.27 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -2.08 Total: -42.37 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -72.85 0.60 -72.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675086044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.176 kcal (2) G-P(sol) polarization free energy of solvation -72.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds