Wall clock time and date at job start Wed Apr 1 2020 03:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00390 * 2 1 4 4 H 1.48504 * 109.47287 * 269.99955 * 3 2 1 5 5 H 1.48497 * 109.47297 * 29.99805 * 3 2 1 6 6 H 1.48498 * 109.47290 * 149.99927 * 3 2 1 7 7 C 1.38823 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99914 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47415 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46961 * 60.00334 * 10 9 7 13 13 C 1.52998 * 109.46994 * 65.00110 * 12 10 9 14 14 N 1.46504 * 109.47350 * 179.97438 * 13 12 10 15 15 C 1.34771 * 120.00354 * 180.02562 * 14 13 12 16 16 O 1.21623 * 119.99876 * 359.97438 * 15 14 13 17 17 C 1.47096 * 120.00056 * 180.02562 * 15 14 13 18 18 C 1.32092 * 118.87471 * 179.73297 * 17 15 14 19 19 C 1.50273 * 122.57494 * 180.10510 * 18 17 15 20 20 O 1.42889 * 110.14912 * 344.83214 * 19 18 17 21 21 C 1.43265 * 113.09961 * 50.31929 * 20 19 18 22 22 C 1.50416 * 118.87808 * 359.97438 * 17 15 14 23 23 C 1.53001 * 109.47525 * 300.00674 * 10 9 7 24 24 C 1.50706 * 109.46607 * 294.99683 * 23 10 9 25 25 C 1.38238 * 119.99744 * 90.00198 * 24 23 10 26 26 C 1.38234 * 119.99693 * 179.97438 * 25 24 23 27 27 C 1.38234 * 120.00240 * 359.97438 * 26 25 24 28 28 C 1.38233 * 120.00037 * 0.26327 * 27 26 25 29 29 C 1.38234 * 120.00173 * 269.97579 * 24 23 10 30 30 H 0.97005 * 119.99559 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00120 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47240 * 184.99614 * 12 10 9 33 33 H 1.08997 * 109.47353 * 305.00278 * 12 10 9 34 34 H 1.09001 * 109.47352 * 300.00209 * 13 12 10 35 35 H 1.09001 * 109.47379 * 59.99730 * 13 12 10 36 36 H 0.97005 * 119.99664 * 359.97438 * 14 13 12 37 37 H 1.07996 * 118.71318 * 0.36613 * 18 17 15 38 38 H 1.09001 * 109.50671 * 224.51571 * 19 18 17 39 39 H 1.09003 * 109.06386 * 104.87032 * 19 18 17 40 40 H 1.08999 * 109.64050 * 171.47417 * 21 20 19 41 41 H 1.08997 * 109.64277 * 50.85560 * 21 20 19 42 42 H 1.08994 * 109.45233 * 283.37903 * 22 17 15 43 43 H 1.09001 * 109.45424 * 43.31775 * 22 17 15 44 44 H 1.08997 * 109.47212 * 175.00386 * 23 10 9 45 45 H 1.08995 * 109.47163 * 54.99797 * 23 10 9 46 46 H 1.07997 * 119.99846 * 359.97438 * 25 24 23 47 47 H 1.07999 * 119.99751 * 179.97438 * 26 25 24 48 48 H 1.08002 * 119.99744 * 179.97438 * 27 26 25 49 49 H 1.07998 * 120.00395 * 179.72811 * 28 27 26 50 50 H 1.07999 * 120.00025 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 1.3495 -4.4853 -0.0020 12 6 2.9384 -3.7385 1.2469 13 6 2.0526 -3.7836 2.4936 14 7 2.8956 -3.8624 3.6892 15 6 2.3292 -3.9135 4.9110 16 8 1.1181 -3.8937 5.0212 17 6 3.1757 -3.9920 6.1114 18 6 2.5972 -4.0357 7.2981 19 6 3.3810 -4.1142 8.5779 20 8 4.7341 -4.4829 8.3045 21 6 5.3395 -3.6818 7.2827 22 6 4.6706 -4.0144 5.9459 23 6 2.9367 -3.7374 -1.2515 24 6 2.0624 -3.7807 -2.4783 25 6 1.6861 -2.6051 -3.1007 26 6 0.8845 -2.6449 -4.2262 27 6 0.4598 -3.8602 -4.7297 28 6 0.8320 -5.0355 -4.1045 29 6 1.6372 -4.9960 -2.9815 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 3.5492 -4.6402 1.2025 33 1 3.5859 -2.8629 1.2928 34 1 1.4417 -2.8820 2.5381 35 1 1.4050 -4.6592 2.4477 36 1 3.8615 -3.8786 3.6013 37 1 1.5187 -4.0183 7.3505 38 1 2.9298 -4.8568 9.2360 39 1 3.3634 -3.1400 9.0665 40 1 6.4047 -3.9055 7.2247 41 1 5.1959 -2.6259 7.5118 42 1 4.9848 -5.0055 5.6191 43 1 4.9643 -3.2763 5.1996 44 1 3.5475 -4.6391 -1.2087 45 1 3.5841 -2.8618 -1.2975 46 1 2.0183 -1.6557 -2.7075 47 1 0.5902 -1.7264 -4.7122 48 1 -0.1668 -3.8912 -5.6089 49 1 0.4966 -5.9848 -4.4953 50 1 1.9312 -5.9144 -2.4952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676898156.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:42 Heat of formation + Delta-G solvation = -59.752117 kcal Electronic energy + Delta-G solvation = -29642.298523 eV Core-core repulsion = 25633.598087 eV Total energy + Delta-G solvation = -4008.700437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.26616 -40.15347 -39.69052 -38.06566 -35.91087 -34.80135 -34.22764 -32.48735 -32.01846 -31.57688 -30.81468 -28.60159 -27.01784 -26.01424 -25.00197 -24.12591 -23.25445 -22.33700 -22.04811 -21.06679 -19.57161 -18.92598 -18.54783 -17.50915 -17.40139 -17.06510 -16.78268 -16.45813 -16.11304 -16.04119 -15.88615 -15.82638 -15.48015 -15.07162 -14.85002 -14.67243 -14.36581 -14.26173 -14.10468 -13.81152 -13.64823 -13.41212 -13.10791 -13.01558 -12.86648 -12.76838 -12.55486 -12.46980 -12.34025 -12.16169 -11.86212 -11.74710 -11.67564 -11.55937 -11.29126 -11.21080 -10.85413 -10.58456 -10.28306 -9.97735 -9.63659 -9.40099 -8.85035 -7.83347 -5.08154 0.26156 0.64511 0.71375 1.45407 1.46016 1.52779 2.15582 2.20428 2.60509 2.93332 3.07510 3.51506 3.59032 3.69709 3.85787 3.92883 4.00670 4.15748 4.20939 4.27881 4.30379 4.31794 4.38898 4.44002 4.44968 4.53540 4.60737 4.66184 4.69566 4.77960 4.80748 4.83488 4.88321 4.96085 4.98134 5.10503 5.16452 5.22975 5.27625 5.37098 5.41559 5.45803 5.50131 5.52962 5.64277 5.73032 5.81654 6.04219 6.09416 6.34126 6.36965 6.54553 7.19854 7.44127 8.20655 8.43212 9.40509 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.002618 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.652219 B =10691.082939 C =12171.360995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.946 3.054 4 H -0.293 1.293 5 H -0.309 1.309 6 H -0.269 1.269 7 C -0.197 4.197 8 H 0.079 0.921 9 N -0.723 5.723 10 C 0.181 3.819 11 H 0.062 0.938 12 C -0.124 4.124 13 C 0.136 3.864 14 N -0.706 5.706 15 C 0.537 3.463 16 O -0.596 6.596 17 C -0.179 4.179 18 C -0.114 4.114 19 C 0.088 3.912 20 O -0.392 6.392 21 C 0.057 3.943 22 C -0.116 4.116 23 C -0.084 4.084 24 C -0.072 4.072 25 C -0.108 4.108 26 C -0.143 4.143 27 C -0.137 4.137 28 C -0.130 4.130 29 C -0.129 4.129 30 H 0.242 0.758 31 H 0.367 0.633 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.052 0.948 36 H 0.414 0.586 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.057 0.943 46 H 0.097 0.903 47 H 0.112 0.888 48 H 0.136 0.864 49 H 0.145 0.855 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.739 -13.300 6.987 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.778 3.222 4 H -0.221 1.221 5 H -0.237 1.237 6 H -0.193 1.193 7 C -0.329 4.329 8 H 0.097 0.903 9 N -0.360 5.360 10 C 0.071 3.929 11 H 0.080 0.920 12 C -0.164 4.164 13 C 0.013 3.987 14 N -0.357 5.357 15 C 0.326 3.674 16 O -0.479 6.479 17 C -0.183 4.183 18 C -0.134 4.134 19 C 0.012 3.988 20 O -0.310 6.310 21 C -0.019 4.019 22 C -0.153 4.153 23 C -0.123 4.123 24 C -0.072 4.072 25 C -0.126 4.126 26 C -0.161 4.161 27 C -0.155 4.155 28 C -0.147 4.147 29 C -0.147 4.147 30 H 0.051 0.949 31 H 0.198 0.802 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.252 0.748 37 H 0.137 0.863 38 H 0.149 0.851 39 H 0.109 0.891 40 H 0.144 0.856 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.076 0.924 46 H 0.115 0.885 47 H 0.130 0.870 48 H 0.154 0.846 49 H 0.163 0.837 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.167 -13.314 7.123 19.392 hybrid contribution -0.600 2.018 -0.453 2.154 sum 11.567 -11.296 6.670 17.490 Atomic orbital electron populations 1.69810 1.06423 1.24969 1.60824 1.25264 0.95825 1.00072 1.05416 0.85524 0.78021 0.81607 0.77042 1.22110 1.23673 1.19350 1.19288 0.91064 0.84487 1.38078 0.90348 1.42507 1.04960 1.00846 1.87690 1.20346 0.92936 0.87933 0.91645 0.91997 1.22117 0.98274 1.02708 0.93257 1.21090 0.93552 1.00150 0.83945 1.45862 1.11204 1.73370 1.05285 1.19075 0.87647 0.75693 0.84967 1.90771 1.16791 1.52829 1.87537 1.20995 0.97064 1.07899 0.92295 1.23932 1.01789 0.92404 0.95256 1.21746 0.81091 1.03278 0.92657 1.88108 1.25752 1.59644 1.57538 1.22846 0.98724 0.95160 0.85190 1.21155 0.88914 1.04619 1.00627 1.21052 0.96820 1.02286 0.92189 1.19947 0.98329 0.92824 0.96125 1.21132 0.98056 0.98368 0.95041 1.21292 0.99011 0.98583 0.97232 1.21307 1.00880 0.92321 1.01000 1.21382 0.98405 0.98721 0.96234 1.21303 0.98917 0.97417 0.97070 0.94900 0.80206 0.88709 0.91812 0.94545 0.93007 0.74827 0.86323 0.85056 0.89148 0.85624 0.91946 0.88268 0.88345 0.88924 0.92414 0.88480 0.86958 0.84593 0.83724 0.84083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.95 13.06 21.65 0.28 -58.66 16 2 C -0.07 -4.10 5.50 84.87 0.47 -3.63 16 3 Si 0.95 45.62 29.55 68.60 2.03 47.65 16 4 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 5 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.20 -9.87 7.88 84.04 0.66 -9.20 16 8 H 0.08 3.74 6.64 -2.91 -0.02 3.72 16 9 N -0.72 -32.99 4.13 -322.94 -1.33 -34.32 16 10 C 0.18 6.17 2.67 44.99 0.12 6.29 16 11 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 12 C -0.12 -3.59 4.73 30.60 0.14 -3.45 16 13 C 0.14 4.63 5.56 86.38 0.48 5.11 16 14 N -0.71 -19.94 5.50 -466.71 -2.57 -22.51 16 15 C 0.54 17.34 7.73 86.57 0.67 18.01 16 16 O -0.60 -25.27 16.06 -4.10 -0.07 -25.33 16 17 C -0.18 -4.26 5.86 -18.59 -0.11 -4.37 16 18 C -0.11 -2.49 9.58 24.59 0.24 -2.26 16 19 C 0.09 1.32 7.04 71.10 0.50 1.82 16 20 O -0.39 -6.69 10.83 -148.98 -1.61 -8.30 16 21 C 0.06 0.75 6.88 72.03 0.50 1.25 16 22 C -0.12 -1.79 5.29 29.80 0.16 -1.63 16 23 C -0.08 -2.59 4.75 29.85 0.14 -2.44 16 24 C -0.07 -2.41 4.95 -19.86 -0.10 -2.51 16 25 C -0.11 -4.18 9.31 22.27 0.21 -3.97 16 26 C -0.14 -5.00 10.05 22.27 0.22 -4.77 16 27 C -0.14 -3.96 10.05 22.27 0.22 -3.74 16 28 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 29 C -0.13 -3.60 9.70 22.27 0.22 -3.39 16 30 H 0.24 14.70 8.31 -92.70 -0.77 13.93 16 31 H 0.37 19.42 8.03 -92.71 -0.74 18.68 16 32 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 2.00 7.11 -2.39 -0.02 1.98 16 34 H 0.04 1.63 7.75 -2.39 -0.02 1.61 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.41 8.46 6.78 -92.70 -0.63 7.84 16 37 H 0.12 2.99 7.29 -2.91 -0.02 2.97 16 38 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 0.77 8.09 -2.39 -0.02 0.76 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.30 16 43 H 0.10 1.28 7.31 -2.39 -0.02 1.27 16 44 H 0.09 2.15 8.08 -2.39 -0.02 2.13 16 45 H 0.06 1.97 7.05 -2.39 -0.02 1.95 16 46 H 0.10 4.38 7.37 -2.91 -0.02 4.36 16 47 H 0.11 3.76 8.06 -2.91 -0.02 3.73 16 48 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 49 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 50 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -73.96 407.07 1.27 -72.69 By element: Atomic # 1 Polarization: 45.26 SS G_CDS: -0.42 Total: 44.84 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 4.96 Total: -16.05 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -3.62 Total: -115.50 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.68 Total: -33.64 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -73.96 1.27 -72.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676898156.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.941 kcal (2) G-P(sol) polarization free energy of solvation -73.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds