Wall clock time and date at job start Wed Apr 1 2020 02:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48501 * 109.47154 * 240.00335 * 3 2 1 5 5 H 1.48500 * 109.46967 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47302 * 120.00530 * 3 2 1 7 7 C 1.38814 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99818 * 190.30087 * 7 2 1 9 9 N 1.36937 * 119.99798 * 10.30129 * 7 2 1 10 10 C 1.46928 * 120.63236 * 32.56120 * 9 7 2 11 11 C 1.53192 * 108.77726 * 126.43281 * 10 9 7 12 12 C 1.53033 * 109.31380 * 54.63173 * 11 10 9 13 13 C 1.53042 * 109.54170 * 298.63617 * 12 11 10 14 14 C 1.46934 * 120.60379 * 212.57908 * 9 7 2 15 15 H 1.09000 * 109.56325 * 113.76612 * 14 9 7 16 16 C 1.53001 * 109.61489 * 353.33608 * 14 9 7 17 17 N 1.46502 * 109.47042 * 60.57254 * 16 14 9 18 18 C 1.34779 * 120.00311 * 179.97438 * 17 16 14 19 19 O 1.21278 * 119.99624 * 0.02562 * 18 17 16 20 20 C 1.50696 * 120.00107 * 180.02562 * 18 17 16 21 21 C 1.53001 * 109.46838 * 180.02562 * 20 18 17 22 22 H 1.08992 * 110.13111 * 305.69774 * 21 20 18 23 23 O 1.43943 * 110.15624 * 67.40226 * 21 20 18 24 24 C 1.44032 * 104.90480 * 147.51589 * 23 21 20 25 25 C 1.51082 * 105.99040 * 331.63673 * 24 23 21 26 26 C 1.37966 * 132.68433 * 197.64137 * 25 24 23 27 27 C 1.38298 * 119.91545 * 180.02562 * 26 25 24 28 28 C 1.38264 * 120.04193 * 359.97438 * 27 26 25 29 29 C 1.38289 * 120.04035 * 0.04618 * 28 27 26 30 30 C 1.37967 * 119.92292 * 359.95605 * 29 28 27 31 31 H 0.96999 * 120.00283 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.58298 * 6.64353 * 10 9 7 33 33 H 1.08999 * 109.58071 * 246.21894 * 10 9 7 34 34 H 1.09007 * 109.49412 * 294.68211 * 11 10 9 35 35 H 1.08994 * 109.52258 * 174.60417 * 11 10 9 36 36 H 1.08994 * 109.46261 * 178.61521 * 12 11 10 37 37 H 1.09005 * 109.44849 * 58.64563 * 12 11 10 38 38 H 1.08995 * 109.50328 * 181.31700 * 13 12 11 39 39 H 1.09000 * 109.49855 * 301.38132 * 13 12 11 40 40 H 1.09002 * 109.47061 * 180.57126 * 16 14 9 41 41 H 1.09005 * 109.47561 * 300.57747 * 16 14 9 42 42 H 0.97001 * 119.99725 * 0.02562 * 17 16 14 43 43 H 1.09002 * 109.46924 * 299.99854 * 20 18 17 44 44 H 1.08991 * 109.47462 * 60.00012 * 20 18 17 45 45 H 1.09004 * 110.17867 * 212.48727 * 24 23 21 46 46 H 1.08995 * 110.16032 * 90.78488 * 24 23 21 47 47 H 1.07992 * 120.04387 * 359.97438 * 26 25 24 48 48 H 1.08001 * 119.98142 * 180.02562 * 27 26 25 49 49 H 1.07997 * 119.97541 * 180.02562 * 28 27 26 50 50 H 1.08005 * 120.04003 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0773 -1.2097 0.1667 9 7 1.3421 -2.3784 -0.2131 10 6 0.1669 -2.4232 -1.0938 11 6 0.3838 -3.5108 -2.1507 12 6 0.6989 -4.8369 -1.4550 13 6 1.9852 -4.6936 -0.6383 14 6 1.7871 -3.6193 0.4357 15 1 1.0314 -3.9499 1.1483 16 6 3.1098 -3.3723 1.1641 17 7 2.9183 -2.3425 2.1884 18 6 3.9543 -1.9594 2.9607 19 8 5.0451 -2.4668 2.8074 20 6 3.7571 -0.9005 4.0147 21 6 5.0798 -0.6534 4.7430 22 1 5.4742 -1.5916 5.1331 23 8 6.0324 -0.0482 3.8495 24 6 6.8344 0.8065 4.6867 25 6 5.9429 1.2206 5.8340 26 6 6.0211 2.2425 6.7577 27 6 5.0356 2.3811 7.7179 28 6 3.9731 1.4971 7.7520 29 6 3.8949 0.4726 6.8265 30 6 4.8781 0.3341 5.8685 31 1 -0.4850 0.8400 0.0004 32 1 0.0404 -1.4577 -1.5836 33 1 -0.7211 -2.6565 -0.5064 34 1 1.2174 -3.2309 -2.7949 35 1 -0.5191 -3.6204 -2.7512 36 1 0.8294 -5.6179 -2.2040 37 1 -0.1243 -5.1035 -0.7920 38 1 2.2216 -5.6450 -0.1619 39 1 2.8038 -4.4032 -1.2968 40 1 3.4429 -4.2967 1.6360 41 1 3.8615 -3.0380 0.4490 42 1 2.0458 -1.9370 2.3112 43 1 3.4242 0.0240 3.5431 44 1 3.0054 -1.2349 4.7296 45 1 7.1585 1.6841 4.1273 46 1 7.6998 0.2601 5.0618 47 1 6.8513 2.9327 6.7313 48 1 5.0956 3.1810 8.4412 49 1 3.2038 1.6067 8.5021 50 1 3.0651 -0.2182 6.8533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690460100.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:41 Heat of formation + Delta-G solvation = -30.356778 kcal Electronic energy + Delta-G solvation = -30926.592579 eV Core-core repulsion = 26919.166820 eV Total energy + Delta-G solvation = -4007.425759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.84792 -39.05135 -37.72569 -37.19978 -34.05639 -33.03772 -32.64165 -31.34571 -30.86495 -29.97724 -29.78446 -26.60905 -25.67129 -24.74199 -23.86055 -22.11708 -21.68756 -21.18729 -20.54533 -19.59745 -19.02556 -17.24381 -16.72182 -16.41660 -16.00794 -15.78710 -15.53461 -15.46730 -14.90402 -14.65612 -14.17215 -14.00918 -13.73891 -13.68800 -13.42577 -13.32466 -12.97800 -12.87398 -12.69736 -12.44591 -12.21962 -12.05974 -11.98545 -11.82029 -11.46065 -11.30849 -11.11230 -10.97619 -10.86109 -10.75223 -10.52770 -10.27140 -10.12037 -9.96839 -9.94284 -9.52275 -9.41926 -9.17980 -9.02013 -8.65690 -8.54292 -8.12935 -6.61238 -5.81884 -3.30588 1.08387 1.17499 3.30869 3.37821 3.41758 3.47295 3.50985 3.88230 3.97176 4.12853 4.45607 4.58285 4.76940 4.83559 5.06453 5.23713 5.26355 5.27342 5.33095 5.34910 5.43443 5.43922 5.54638 5.57023 5.66782 5.70542 5.72760 5.77862 5.88465 6.00610 6.08059 6.10203 6.19196 6.20125 6.27601 6.29329 6.36938 6.38472 6.45761 6.62317 6.72630 6.73737 6.75745 6.87737 6.88454 7.02117 7.27890 7.41052 7.68505 7.81989 8.35575 8.44651 8.97955 9.19419 9.79695 10.38338 11.24732 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.003179 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.256234 B = 8805.277314 C = 9704.145873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.009 3.991 3 Si 0.892 3.108 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.161 3.839 15 H 0.031 0.969 16 C 0.136 3.864 17 N -0.696 5.696 18 C 0.511 3.489 19 O -0.555 6.555 20 C -0.140 4.140 21 C 0.141 3.859 22 H 0.091 0.909 23 O -0.335 6.335 24 C 0.086 3.914 25 C -0.129 4.129 26 C -0.097 4.097 27 C -0.118 4.118 28 C -0.117 4.117 29 C -0.091 4.091 30 C -0.122 4.122 31 H 0.254 0.746 32 H 0.085 0.915 33 H 0.017 0.983 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.413 0.587 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.127 0.873 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.765 -0.413 12.571 13.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.722 3.278 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.054 3.946 15 H 0.048 0.952 16 C 0.012 3.988 17 N -0.347 5.347 18 C 0.296 3.704 19 O -0.435 6.435 20 C -0.180 4.180 21 C 0.083 3.917 22 H 0.109 0.891 23 O -0.254 6.254 24 C 0.009 3.991 25 C -0.129 4.129 26 C -0.115 4.115 27 C -0.136 4.136 28 C -0.135 4.135 29 C -0.109 4.109 30 C -0.122 4.122 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.251 0.749 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.113 0.887 46 H 0.094 0.906 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.145 0.855 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.424 -0.661 12.213 13.816 hybrid contribution -0.110 1.300 0.143 1.312 sum 6.314 0.638 12.357 13.891 Atomic orbital electron populations 1.69969 1.05119 1.25522 1.54027 1.25102 0.95216 0.98020 1.00617 0.86531 0.78976 0.83697 0.78645 1.21030 1.21721 1.20499 1.19164 0.91177 0.83512 1.43983 0.91313 1.44064 1.32979 1.03331 1.50859 1.20770 0.88074 0.96877 0.89454 1.22205 0.99799 0.96848 0.99542 1.21359 0.97410 0.97385 0.98325 1.21944 0.98015 0.98125 0.98650 1.20734 0.93080 0.88582 0.92248 0.95154 1.21243 0.98073 0.89657 0.89827 1.45975 1.13355 1.40596 1.34730 1.20224 0.84538 0.83034 0.82588 1.90650 1.25031 1.56869 1.70927 1.21793 0.97138 1.00684 0.98346 1.21029 0.89683 0.94449 0.86529 0.89108 1.89319 1.46591 1.60283 1.29170 1.21787 0.93106 0.94835 0.89350 1.21151 0.97158 0.96424 0.98175 1.20387 0.99422 0.97066 0.94616 1.21122 0.94505 0.99443 0.98561 1.21136 0.98431 0.95095 0.98845 1.20470 0.97789 0.98502 0.94137 1.21130 0.95989 0.97374 0.97716 0.93606 0.89631 0.96442 0.92882 0.93594 0.93777 0.92920 0.93096 0.92124 0.92872 0.91734 0.74921 0.87813 0.87993 0.88721 0.90630 0.85831 0.85619 0.85485 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.46 11.12 55.49 0.62 -23.85 16 2 C 0.01 0.25 5.05 -17.43 -0.09 0.16 16 3 Si 0.89 21.44 29.57 -169.99 -5.03 16.42 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.26 6.94 -15.06 -0.10 -6.36 16 8 H 0.07 1.81 5.92 -52.48 -0.31 1.50 16 9 N -0.59 -13.52 2.97 -164.76 -0.49 -14.01 16 10 C 0.17 3.94 5.24 -3.71 -0.02 3.92 16 11 C -0.14 -2.71 6.08 -26.61 -0.16 -2.88 16 12 C -0.11 -1.78 5.88 -26.69 -0.16 -1.93 16 13 C -0.13 -2.18 5.37 -26.61 -0.14 -2.32 16 14 C 0.16 3.13 3.01 -67.59 -0.20 2.92 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 16 C 0.14 2.63 4.43 -4.04 -0.02 2.61 16 17 N -0.70 -13.45 3.88 -60.29 -0.23 -13.69 16 18 C 0.51 9.83 7.74 -10.99 -0.08 9.75 16 19 O -0.56 -12.24 15.54 -5.07 -0.08 -12.31 16 20 C -0.14 -2.23 5.36 -27.88 -0.15 -2.38 16 21 C 0.14 2.18 2.84 -27.69 -0.08 2.10 16 22 H 0.09 1.39 7.95 -51.93 -0.41 0.98 16 23 O -0.34 -5.91 10.83 -45.86 -0.50 -6.40 16 24 C 0.09 1.13 7.63 36.19 0.28 1.41 16 25 C -0.13 -1.64 6.32 -104.40 -0.66 -2.30 16 26 C -0.10 -1.02 10.04 -39.66 -0.40 -1.42 16 27 C -0.12 -1.13 10.05 -39.55 -0.40 -1.52 16 28 C -0.12 -1.15 10.05 -39.55 -0.40 -1.55 16 29 C -0.09 -1.03 9.80 -39.66 -0.39 -1.42 16 30 C -0.12 -1.63 5.73 -104.40 -0.60 -2.23 16 31 H 0.25 6.80 8.31 -40.82 -0.34 6.47 16 32 H 0.09 2.20 6.19 -51.93 -0.32 1.88 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.39 7.40 -51.93 -0.38 1.00 16 42 H 0.41 8.24 7.42 -40.82 -0.30 7.93 16 43 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 44 H 0.10 1.29 7.88 -51.93 -0.41 0.88 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 49 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 50 H 0.13 1.20 7.89 -52.48 -0.41 0.79 16 LS Contribution 393.63 15.07 5.93 5.93 Total: -1.00 -30.56 393.63 -11.58 -42.14 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -8.03 Total: 9.22 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -3.77 Total: -3.44 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.11 Total: -51.54 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.58 Total: -18.72 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.56 -11.58 -42.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690460100.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.780 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds