Wall clock time and date at job start Wed Apr 1 2020 02:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48501 * 109.47154 * 240.00335 * 3 2 1 5 5 H 1.48500 * 109.46967 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47302 * 120.00530 * 3 2 1 7 7 C 1.38814 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99818 * 190.30087 * 7 2 1 9 9 N 1.36937 * 119.99798 * 10.30129 * 7 2 1 10 10 C 1.46928 * 120.63236 * 32.56120 * 9 7 2 11 11 C 1.53192 * 108.77726 * 126.43281 * 10 9 7 12 12 C 1.53033 * 109.31380 * 54.63173 * 11 10 9 13 13 C 1.53042 * 109.54170 * 298.63617 * 12 11 10 14 14 C 1.46934 * 120.60379 * 212.57908 * 9 7 2 15 15 H 1.09000 * 109.56325 * 113.76612 * 14 9 7 16 16 C 1.53001 * 109.61489 * 353.33608 * 14 9 7 17 17 N 1.46502 * 109.47042 * 60.57254 * 16 14 9 18 18 C 1.34779 * 120.00311 * 179.97438 * 17 16 14 19 19 O 1.21278 * 119.99624 * 0.02562 * 18 17 16 20 20 C 1.50696 * 120.00107 * 180.02562 * 18 17 16 21 21 C 1.53001 * 109.46838 * 180.02562 * 20 18 17 22 22 H 1.08992 * 110.13111 * 305.69774 * 21 20 18 23 23 O 1.43943 * 110.15624 * 67.40226 * 21 20 18 24 24 C 1.44032 * 104.90480 * 147.51589 * 23 21 20 25 25 C 1.51082 * 105.99040 * 331.63673 * 24 23 21 26 26 C 1.37966 * 132.68433 * 197.64137 * 25 24 23 27 27 C 1.38298 * 119.91545 * 180.02562 * 26 25 24 28 28 C 1.38264 * 120.04193 * 359.97438 * 27 26 25 29 29 C 1.38289 * 120.04035 * 0.04618 * 28 27 26 30 30 C 1.37967 * 119.92292 * 359.95605 * 29 28 27 31 31 H 0.96999 * 120.00283 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.58298 * 6.64353 * 10 9 7 33 33 H 1.08999 * 109.58071 * 246.21894 * 10 9 7 34 34 H 1.09007 * 109.49412 * 294.68211 * 11 10 9 35 35 H 1.08994 * 109.52258 * 174.60417 * 11 10 9 36 36 H 1.08994 * 109.46261 * 178.61521 * 12 11 10 37 37 H 1.09005 * 109.44849 * 58.64563 * 12 11 10 38 38 H 1.08995 * 109.50328 * 181.31700 * 13 12 11 39 39 H 1.09000 * 109.49855 * 301.38132 * 13 12 11 40 40 H 1.09002 * 109.47061 * 180.57126 * 16 14 9 41 41 H 1.09005 * 109.47561 * 300.57747 * 16 14 9 42 42 H 0.97001 * 119.99725 * 0.02562 * 17 16 14 43 43 H 1.09002 * 109.46924 * 299.99854 * 20 18 17 44 44 H 1.08991 * 109.47462 * 60.00012 * 20 18 17 45 45 H 1.09004 * 110.17867 * 212.48727 * 24 23 21 46 46 H 1.08995 * 110.16032 * 90.78488 * 24 23 21 47 47 H 1.07992 * 120.04387 * 359.97438 * 26 25 24 48 48 H 1.08001 * 119.98142 * 180.02562 * 27 26 25 49 49 H 1.07997 * 119.97541 * 180.02562 * 28 27 26 50 50 H 1.08005 * 120.04003 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0773 -1.2097 0.1667 9 7 1.3421 -2.3784 -0.2131 10 6 0.1669 -2.4232 -1.0938 11 6 0.3838 -3.5108 -2.1507 12 6 0.6989 -4.8369 -1.4550 13 6 1.9852 -4.6936 -0.6383 14 6 1.7871 -3.6193 0.4357 15 1 1.0314 -3.9499 1.1483 16 6 3.1098 -3.3723 1.1641 17 7 2.9183 -2.3425 2.1884 18 6 3.9543 -1.9594 2.9607 19 8 5.0451 -2.4668 2.8074 20 6 3.7571 -0.9005 4.0147 21 6 5.0798 -0.6534 4.7430 22 1 5.4742 -1.5916 5.1331 23 8 6.0324 -0.0482 3.8495 24 6 6.8344 0.8065 4.6867 25 6 5.9429 1.2206 5.8340 26 6 6.0211 2.2425 6.7577 27 6 5.0356 2.3811 7.7179 28 6 3.9731 1.4971 7.7520 29 6 3.8949 0.4726 6.8265 30 6 4.8781 0.3341 5.8685 31 1 -0.4850 0.8400 0.0004 32 1 0.0404 -1.4577 -1.5836 33 1 -0.7211 -2.6565 -0.5064 34 1 1.2174 -3.2309 -2.7949 35 1 -0.5191 -3.6204 -2.7512 36 1 0.8294 -5.6179 -2.2040 37 1 -0.1243 -5.1035 -0.7920 38 1 2.2216 -5.6450 -0.1619 39 1 2.8038 -4.4032 -1.2968 40 1 3.4429 -4.2967 1.6360 41 1 3.8615 -3.0380 0.4490 42 1 2.0458 -1.9370 2.3112 43 1 3.4242 0.0240 3.5431 44 1 3.0054 -1.2349 4.7296 45 1 7.1585 1.6841 4.1273 46 1 7.6998 0.2601 5.0618 47 1 6.8513 2.9327 6.7313 48 1 5.0956 3.1810 8.4412 49 1 3.2038 1.6067 8.5021 50 1 3.0651 -0.2182 6.8533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690460100.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:40 Heat of formation + Delta-G solvation = -46.926541 kcal Electronic energy + Delta-G solvation = -30927.311098 eV Core-core repulsion = 26919.166820 eV Total energy + Delta-G solvation = -4008.144278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.87749 -40.57654 -39.27336 -38.25449 -35.64040 -34.89295 -33.79117 -32.36924 -32.25607 -31.68669 -30.95107 -27.96073 -27.19692 -26.19647 -25.00296 -23.79211 -22.61494 -22.39272 -21.95764 -21.09452 -20.62129 -18.69005 -18.08505 -17.61377 -17.41543 -17.16195 -16.99844 -16.51696 -16.26091 -16.03788 -15.78822 -15.53499 -15.10304 -14.88817 -14.72279 -14.62654 -14.48830 -14.06167 -13.96660 -13.77908 -13.60357 -13.48025 -13.29693 -13.11454 -12.85699 -12.82689 -12.62145 -12.56716 -12.34566 -12.21101 -12.03881 -11.83157 -11.78965 -11.52362 -11.16086 -11.08937 -11.04845 -10.72804 -10.50895 -9.86419 -9.78811 -9.56860 -8.52208 -7.82736 -5.31471 0.24064 0.36826 1.39951 1.43282 1.49186 1.77441 2.40960 2.49159 2.72321 2.86570 3.19110 3.32720 3.56041 3.60505 3.80439 3.97583 4.02558 4.04344 4.19499 4.22565 4.25517 4.29260 4.36927 4.39121 4.45218 4.47852 4.57025 4.60334 4.66482 4.73525 4.80693 4.81655 4.86340 4.88800 5.00978 5.07102 5.15521 5.22539 5.29337 5.38958 5.40252 5.41721 5.47682 5.51196 5.65403 5.68216 5.76500 5.78692 5.86141 5.98546 6.46356 6.76819 7.21250 7.41047 7.89360 8.42684 9.21109 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.003179 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.256234 B = 8805.277314 C = 9704.145873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.027 4.027 3 Si 0.934 3.066 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.056 0.944 9 N -0.601 5.601 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.123 4.123 14 C 0.161 3.839 15 H 0.036 0.964 16 C 0.141 3.859 17 N -0.696 5.696 18 C 0.507 3.493 19 O -0.586 6.586 20 C -0.132 4.132 21 C 0.142 3.858 22 H 0.084 0.916 23 O -0.377 6.377 24 C 0.080 3.920 25 C -0.147 4.147 26 C -0.101 4.101 27 C -0.115 4.115 28 C -0.118 4.118 29 C -0.100 4.100 30 C -0.144 4.144 31 H 0.249 0.751 32 H 0.050 0.950 33 H 0.003 0.997 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.411 0.589 43 H 0.088 0.912 44 H 0.135 0.865 45 H 0.103 0.897 46 H 0.088 0.912 47 H 0.146 0.854 48 H 0.158 0.842 49 H 0.156 0.844 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.555 -0.865 14.218 15.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.224 4.224 3 Si 0.764 3.236 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.364 4.364 8 H 0.073 0.927 9 N -0.326 5.326 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.139 4.139 13 C -0.162 4.162 14 C 0.055 3.945 15 H 0.053 0.947 16 C 0.017 3.983 17 N -0.346 5.346 18 C 0.294 3.706 19 O -0.467 6.467 20 C -0.172 4.172 21 C 0.084 3.916 22 H 0.101 0.899 23 O -0.296 6.296 24 C 0.004 3.996 25 C -0.147 4.147 26 C -0.119 4.119 27 C -0.133 4.133 28 C -0.135 4.135 29 C -0.118 4.118 30 C -0.144 4.144 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.021 0.979 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.248 0.752 43 H 0.106 0.894 44 H 0.153 0.847 45 H 0.121 0.879 46 H 0.106 0.894 47 H 0.164 0.836 48 H 0.175 0.825 49 H 0.174 0.826 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.219 -1.129 13.862 15.235 hybrid contribution -0.007 1.430 -0.340 1.470 sum 6.212 0.302 13.522 14.884 Atomic orbital electron populations 1.70067 1.05769 1.25347 1.55751 1.25456 0.95620 0.99651 1.01639 0.85878 0.77897 0.81936 0.77897 1.21949 1.21743 1.20758 1.19098 0.90581 0.84528 1.42185 0.92679 1.44239 1.32829 1.03906 1.51618 1.20592 0.87508 0.96618 0.90008 1.22064 1.00362 0.96740 0.98374 1.21341 0.97132 0.96591 0.98882 1.21903 0.98119 0.98414 0.97800 1.20891 0.92851 0.87766 0.93027 0.94666 1.21208 0.97350 0.90305 0.89471 1.46022 1.13253 1.40637 1.34714 1.20778 0.83838 0.83129 0.82808 1.90625 1.26086 1.58125 1.71880 1.21811 0.98769 0.98603 0.98002 1.20977 0.88783 0.94884 0.86929 0.89886 1.89251 1.47735 1.61283 1.31376 1.21964 0.93231 0.94818 0.89589 1.21240 0.97110 0.97518 0.98811 1.20732 1.00495 0.96588 0.94084 1.21568 0.93583 0.99772 0.98354 1.21541 0.99130 0.94179 0.98696 1.20761 0.97682 0.99409 0.93922 1.21045 0.97589 0.97607 0.98193 0.94191 0.93167 0.97904 0.93863 0.91693 0.90793 0.92250 0.89947 0.93119 0.90955 0.94361 0.75245 0.89374 0.84695 0.87874 0.89438 0.83578 0.82464 0.82631 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.19 11.12 21.65 0.24 -50.94 16 2 C -0.03 -1.44 5.05 84.86 0.43 -1.01 16 3 Si 0.93 45.16 29.57 68.60 2.03 47.18 16 4 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.23 -11.98 6.94 84.03 0.58 -11.39 16 8 H 0.06 2.99 5.92 -2.91 -0.02 2.97 16 9 N -0.60 -27.80 2.97 -675.19 -2.01 -29.80 16 10 C 0.18 8.13 5.24 86.36 0.45 8.58 16 11 C -0.14 -4.92 6.08 30.67 0.19 -4.73 16 12 C -0.10 -3.07 5.88 30.62 0.18 -2.89 16 13 C -0.12 -3.90 5.37 30.67 0.16 -3.73 16 14 C 0.16 6.10 3.01 44.97 0.14 6.24 16 15 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 16 C 0.14 5.42 4.43 86.38 0.38 5.80 16 17 N -0.70 -27.26 3.88 -463.05 -1.80 -29.06 16 18 C 0.51 19.95 7.74 87.66 0.68 20.62 16 19 O -0.59 -26.51 15.54 7.14 0.11 -26.40 16 20 C -0.13 -4.29 5.36 29.85 0.16 -4.13 16 21 C 0.14 4.49 2.84 29.97 0.09 4.58 16 22 H 0.08 2.65 7.95 -2.39 -0.02 2.63 16 23 O -0.38 -13.82 10.83 -138.82 -1.50 -15.32 16 24 C 0.08 2.14 7.63 71.36 0.54 2.69 16 25 C -0.15 -3.64 6.32 -19.72 -0.12 -3.77 16 26 C -0.10 -1.91 10.04 22.22 0.22 -1.69 16 27 C -0.12 -1.82 10.05 22.29 0.22 -1.59 16 28 C -0.12 -1.96 10.05 22.29 0.22 -1.73 16 29 C -0.10 -2.09 9.80 22.22 0.22 -1.87 16 30 C -0.14 -3.79 5.73 -19.72 -0.11 -3.91 16 31 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 32 H 0.05 2.64 6.19 -2.39 -0.01 2.62 16 33 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.04 1.67 7.40 -2.38 -0.02 1.65 16 42 H 0.41 16.57 7.42 -92.71 -0.69 15.88 16 43 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.14 3.33 7.88 -2.39 -0.02 3.31 16 45 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 47 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 48 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 49 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 50 H 0.14 2.40 7.89 -2.91 -0.02 2.38 16 Total: -1.00 -68.25 393.63 1.95 -66.29 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.25 Total: 31.99 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 4.63 Total: 6.06 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -3.56 Total: -109.80 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -1.39 Total: -41.72 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -68.25 1.95 -66.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690460100.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.367 kcal (2) G-P(sol) polarization free energy of solvation -68.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds