Wall clock time and date at job start Wed Apr 1 2020 02:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00228 * 2 1 4 4 H 1.48498 * 109.47076 * 270.00000 * 3 2 1 5 5 H 1.48503 * 109.47344 * 30.00161 * 3 2 1 6 6 H 1.48503 * 109.46999 * 150.00159 * 3 2 1 7 7 C 1.38816 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00019 * 194.16066 * 7 2 1 9 9 N 1.36936 * 120.00046 * 14.16459 * 7 2 1 10 10 C 1.46925 * 120.62927 * 30.95274 * 9 7 2 11 11 C 1.53200 * 108.77348 * 126.39373 * 10 9 7 12 12 C 1.53034 * 109.31505 * 54.63641 * 11 10 9 13 13 C 1.53043 * 109.53537 * 298.63470 * 12 11 10 14 14 C 1.46921 * 120.62959 * 210.95201 * 9 7 2 15 15 H 1.09008 * 109.70099 * 113.75546 * 14 9 7 16 16 C 1.53000 * 109.58781 * 353.39813 * 14 9 7 17 17 N 1.46495 * 109.47203 * 60.70737 * 16 14 9 18 18 C 1.34778 * 120.00110 * 180.02562 * 17 16 14 19 19 O 1.21283 * 119.99861 * 359.97438 * 18 17 16 20 20 C 1.50697 * 120.00033 * 179.97438 * 18 17 16 21 21 C 1.53000 * 109.47126 * 179.97438 * 20 18 17 22 22 H 1.08997 * 110.13132 * 55.24731 * 21 20 18 23 23 O 1.43948 * 110.15399 * 293.54843 * 21 20 18 24 24 C 1.43946 * 104.94684 * 269.31971 * 23 21 20 25 25 C 1.51075 * 105.95657 * 331.55523 * 24 23 21 26 26 C 1.37975 * 132.68678 * 197.66059 * 25 24 23 27 27 C 1.38295 * 119.91536 * 180.30665 * 26 25 24 28 28 C 1.38259 * 120.04363 * 359.40362 * 27 26 25 29 29 C 1.38291 * 120.04361 * 0.62224 * 28 27 26 30 30 C 1.37977 * 119.91392 * 359.67390 * 29 28 27 31 31 H 0.97000 * 119.99837 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.59066 * 6.60977 * 10 9 7 33 33 H 1.09001 * 109.70812 * 246.24754 * 10 9 7 34 34 H 1.08999 * 109.49568 * 294.67897 * 11 10 9 35 35 H 1.09002 * 109.52076 * 174.60138 * 11 10 9 36 36 H 1.08997 * 109.46445 * 178.61831 * 12 11 10 37 37 H 1.09004 * 109.44995 * 58.64197 * 12 11 10 38 38 H 1.08999 * 109.49761 * 301.41698 * 13 12 11 39 39 H 1.09004 * 109.49774 * 181.31457 * 13 12 11 40 40 H 1.09001 * 109.46971 * 300.70476 * 16 14 9 41 41 H 1.09006 * 109.46804 * 180.70778 * 16 14 9 42 42 H 0.97003 * 120.00033 * 0.02562 * 17 16 14 43 43 H 1.09003 * 109.46800 * 60.00208 * 20 18 17 44 44 H 1.08998 * 109.47132 * 299.99897 * 20 18 17 45 45 H 1.09000 * 110.15142 * 212.43120 * 24 23 21 46 46 H 1.08997 * 110.20829 * 90.71373 * 24 23 21 47 47 H 1.07993 * 120.03796 * 0.03496 * 26 25 24 48 48 H 1.08000 * 119.97474 * 179.72536 * 27 26 25 49 49 H 1.08000 * 119.97711 * 180.27489 * 28 27 26 50 50 H 1.07994 * 120.04515 * 179.70590 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0656 -1.2166 0.2283 9 7 1.3567 -2.3699 -0.2913 10 6 0.2126 -2.3780 -1.2130 11 6 0.4725 -3.4127 -2.3125 12 6 0.7718 -4.7692 -1.6704 13 6 2.0285 -4.6591 -0.8039 14 6 1.7863 -3.6385 0.3126 15 1 1.0101 -4.0078 0.9831 16 6 3.0812 -3.4203 1.0979 17 7 2.8467 -2.4441 2.1647 18 6 3.8527 -2.0930 2.9900 19 8 4.9521 -2.5856 2.8497 20 6 3.6117 -1.0884 4.0871 21 6 4.9065 -0.8702 4.8724 22 1 5.7101 -0.5771 4.1968 23 8 5.2662 -2.0715 5.5793 24 6 4.6341 -1.9480 6.8667 25 6 4.5363 -0.4656 7.1409 26 6 4.3281 0.2604 8.2956 27 6 4.2789 1.6415 8.2425 28 6 4.4505 2.2944 7.0359 29 6 4.6586 1.5668 5.8784 30 6 4.7016 0.1887 5.9303 31 1 -0.4850 0.8401 0.0004 32 1 0.0968 -1.3908 -1.6604 33 1 -0.6950 -2.6419 -0.6701 34 1 1.3258 -3.0984 -2.9135 35 1 -0.4088 -3.4977 -2.9483 36 1 0.9330 -5.5128 -2.4508 37 1 -0.0719 -5.0710 -1.0497 38 1 2.8671 -4.3330 -1.4190 39 1 2.2544 -5.6312 -0.3655 40 1 3.8544 -3.0464 0.4267 41 1 3.4048 -4.3651 1.5346 42 1 1.9673 -2.0503 2.2772 43 1 2.8385 -1.4621 4.7585 44 1 3.2878 -0.1438 3.6500 45 1 5.2416 -2.4321 7.6313 46 1 3.6389 -2.3919 6.8416 47 1 4.1993 -0.2494 9.2388 48 1 4.1116 2.2105 9.1450 49 1 4.4163 3.3731 6.9964 50 1 4.7879 2.0766 4.9352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690460102.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:49 Heat of formation + Delta-G solvation = -30.414373 kcal Electronic energy + Delta-G solvation = -30921.730273 eV Core-core repulsion = 26914.302017 eV Total energy + Delta-G solvation = -4007.428257 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.95412 -39.05276 -37.77048 -37.21832 -34.07175 -33.07030 -32.39523 -31.39496 -30.90079 -29.99626 -29.78187 -26.82844 -25.80174 -24.77242 -23.72347 -22.15409 -21.65327 -21.22829 -20.58653 -19.64376 -19.05030 -17.12007 -16.69646 -16.64390 -16.14237 -15.69327 -15.58573 -15.46012 -14.93556 -14.48488 -14.11963 -14.03062 -13.93246 -13.66121 -13.44530 -13.14518 -13.08934 -12.95322 -12.73274 -12.54883 -12.36695 -12.01884 -11.94463 -11.88986 -11.52576 -11.26719 -11.15070 -10.95422 -10.91772 -10.81331 -10.54287 -10.29121 -10.14732 -10.00672 -9.99316 -9.54012 -9.44032 -9.20584 -9.01624 -8.67192 -8.58293 -8.15086 -6.67682 -5.85915 -3.31912 1.07472 1.17452 3.28624 3.32085 3.38001 3.39733 3.49685 3.80296 3.99856 4.18961 4.40653 4.56791 4.77874 4.85386 5.02943 5.18248 5.22275 5.27464 5.28201 5.31393 5.40228 5.47165 5.52664 5.55068 5.64973 5.68286 5.70462 5.82290 5.88866 5.97814 6.00400 6.08495 6.17762 6.19928 6.28266 6.31255 6.35085 6.36823 6.43203 6.60466 6.71024 6.72120 6.73345 6.84115 6.85795 6.99685 7.26114 7.36993 7.63521 7.77753 8.33648 8.39482 8.96659 9.14690 9.76327 10.34735 11.21035 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.003280 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.615159 B = 8535.500938 C =10005.390639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.007 3.993 3 Si 0.891 3.109 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.071 0.929 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.161 3.839 15 H 0.031 0.969 16 C 0.136 3.864 17 N -0.696 5.696 18 C 0.512 3.488 19 O -0.553 6.553 20 C -0.155 4.155 21 C 0.140 3.860 22 H 0.111 0.889 23 O -0.333 6.333 24 C 0.083 3.917 25 C -0.128 4.128 26 C -0.098 4.098 27 C -0.117 4.117 28 C -0.117 4.117 29 C -0.090 4.090 30 C -0.120 4.120 31 H 0.253 0.747 32 H 0.084 0.916 33 H 0.018 0.982 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.413 0.587 43 H 0.092 0.908 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.075 0.925 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.127 0.873 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.059 -0.831 12.259 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.192 4.192 3 Si 0.721 3.279 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.183 4.183 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.054 3.946 15 H 0.048 0.952 16 C 0.012 3.988 17 N -0.347 5.347 18 C 0.297 3.703 19 O -0.432 6.432 20 C -0.195 4.195 21 C 0.082 3.918 22 H 0.129 0.871 23 O -0.251 6.251 24 C 0.006 3.994 25 C -0.128 4.128 26 C -0.116 4.116 27 C -0.135 4.135 28 C -0.135 4.135 29 C -0.108 4.108 30 C -0.120 4.120 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.251 0.749 43 H 0.110 0.890 44 H 0.123 0.877 45 H 0.113 0.887 46 H 0.093 0.907 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.145 0.855 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.846 -1.228 12.079 13.072 hybrid contribution -0.342 1.413 -0.007 1.454 sum 4.504 0.186 12.072 12.886 Atomic orbital electron populations 1.70008 1.05127 1.25436 1.53849 1.25065 0.95176 0.98063 1.00899 0.86462 0.79261 0.84140 0.78046 1.21414 1.21734 1.20300 1.19229 0.92091 0.84016 1.42499 0.91156 1.44077 1.35835 1.02021 1.49267 1.20748 0.88481 0.97492 0.88486 1.22195 0.99945 0.96590 0.99611 1.21361 0.97590 0.97352 0.98196 1.21944 0.98164 0.98281 0.98337 1.20728 0.93320 0.88442 0.92150 0.95150 1.21248 0.98078 0.90770 0.88727 1.45974 1.14095 1.43821 1.30840 1.20165 0.84791 0.82669 0.82636 1.90662 1.24033 1.55681 1.72858 1.22070 0.98853 1.01113 0.97505 1.21037 0.97057 0.82127 0.91625 0.87083 1.89300 1.72132 1.38749 1.24933 1.21804 0.98900 0.91312 0.87405 1.21139 1.00722 0.96664 0.94300 1.20379 1.00523 0.93706 0.96955 1.21120 1.00253 0.94076 0.98081 1.21142 0.99928 1.00025 0.92361 1.20510 0.99221 0.92021 0.99055 1.21057 1.00749 0.94683 0.95554 0.93648 0.89802 0.96404 0.92850 0.93563 0.93733 0.92904 0.92097 0.93044 0.91738 0.92814 0.74938 0.88971 0.87660 0.88686 0.90711 0.85840 0.85614 0.85491 0.85478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.07 11.23 55.49 0.62 -23.44 16 2 C 0.01 0.18 4.96 -17.43 -0.09 0.09 16 3 Si 0.89 20.58 29.58 -169.99 -5.03 15.55 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.25 -6.12 7.01 -15.06 -0.11 -6.22 16 8 H 0.07 1.79 5.85 -52.48 -0.31 1.48 16 9 N -0.59 -13.33 2.97 -164.77 -0.49 -13.82 16 10 C 0.17 3.89 5.27 -3.71 -0.02 3.87 16 11 C -0.14 -2.67 6.08 -26.61 -0.16 -2.83 16 12 C -0.11 -1.76 5.88 -26.69 -0.16 -1.92 16 13 C -0.13 -2.16 5.37 -26.61 -0.14 -2.30 16 14 C 0.16 3.11 3.00 -67.60 -0.20 2.90 16 15 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 16 C 0.14 2.61 4.43 -4.04 -0.02 2.59 16 17 N -0.70 -13.37 3.86 -60.30 -0.23 -13.60 16 18 C 0.51 9.75 7.73 -10.99 -0.08 9.67 16 19 O -0.55 -12.14 15.52 -6.37 -0.10 -12.24 16 20 C -0.16 -2.43 5.38 -27.88 -0.15 -2.58 16 21 C 0.14 2.13 2.94 -27.70 -0.08 2.05 16 22 H 0.11 1.80 7.98 -51.93 -0.41 1.38 16 23 O -0.33 -5.35 10.78 -47.16 -0.51 -5.86 16 24 C 0.08 1.00 7.39 36.19 0.27 1.27 16 25 C -0.13 -1.55 6.32 -104.40 -0.66 -2.21 16 26 C -0.10 -0.98 10.04 -39.66 -0.40 -1.38 16 27 C -0.12 -1.10 10.05 -39.55 -0.40 -1.50 16 28 C -0.12 -1.18 10.05 -39.55 -0.40 -1.58 16 29 C -0.09 -1.07 10.04 -39.66 -0.40 -1.47 16 30 C -0.12 -1.60 5.62 -104.40 -0.59 -2.18 16 31 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.08 2.13 6.19 -51.93 -0.32 1.80 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.36 7.39 -51.93 -0.38 0.97 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.41 8.19 7.44 -40.82 -0.30 7.89 16 43 H 0.09 1.30 7.97 -51.93 -0.41 0.89 16 44 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 48 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 49 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 50 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 393.90 15.07 5.94 5.94 Total: -1.00 -29.61 393.90 -11.62 -41.23 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -8.04 Total: 9.98 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -3.78 Total: -3.73 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.10 Total: -50.87 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.61 Total: -18.10 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.61 -11.62 -41.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690460102.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.819 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds