Wall clock time and date at job start Wed Apr 1 2020 02:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00384 * 2 1 4 4 H 1.48493 * 109.47363 * 240.00584 * 3 2 1 5 5 H 1.48498 * 109.46786 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47192 * 120.00105 * 3 2 1 7 7 C 1.38811 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00371 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99846 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46816 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.88851 * 57.42576 * 11 10 9 13 13 C 1.55160 * 111.00455 * 293.54383 * 11 10 9 14 14 C 1.54321 * 102.94340 * 206.42455 * 13 11 10 15 15 N 1.47015 * 107.27230 * 22.19324 * 14 13 11 16 16 C 1.34782 * 125.65137 * 181.02505 * 15 14 13 17 17 O 1.21283 * 119.99858 * 180.02562 * 16 15 14 18 18 C 1.50695 * 119.99755 * 0.02562 * 16 15 14 19 19 C 1.53001 * 109.47056 * 180.02562 * 18 16 15 20 20 H 1.08998 * 109.21220 * 304.61125 * 19 18 16 21 21 O 1.42724 * 109.33764 * 64.20915 * 19 18 16 22 22 C 1.43212 * 113.13307 * 172.06959 * 21 19 18 23 23 C 1.52974 * 108.49174 * 289.34398 * 22 21 19 24 24 C 1.50745 * 109.76972 * 49.18378 * 23 22 21 25 25 C 1.38589 * 118.76808 * 163.22424 * 24 23 22 26 26 C 1.38076 * 120.27491 * 179.50682 * 25 24 23 27 27 C 1.38259 * 119.86225 * 0.28460 * 26 25 24 28 28 C 1.38053 * 119.89829 * 359.51908 * 27 26 25 29 29 C 1.37909 * 121.34884 * 342.91409 * 24 23 22 30 30 C 1.47425 * 108.70441 * 1.28594 * 15 14 13 31 31 H 0.96997 * 119.99550 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00218 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.47052 * 59.99708 * 10 9 7 34 34 H 1.08995 * 109.47254 * 299.99341 * 10 9 7 35 35 H 1.09005 * 110.71697 * 88.06012 * 13 11 10 36 36 H 1.08995 * 110.72146 * 324.79056 * 13 11 10 37 37 H 1.08999 * 109.88239 * 262.77737 * 14 13 11 38 38 H 1.09004 * 110.01013 * 141.68193 * 14 13 11 39 39 H 1.09001 * 109.47242 * 60.00542 * 18 16 15 40 40 H 1.09002 * 109.47632 * 300.00396 * 18 16 15 41 41 H 1.08994 * 109.63507 * 49.04422 * 22 21 19 42 42 H 1.08997 * 109.63502 * 169.44368 * 22 21 19 43 43 H 1.08998 * 109.42241 * 289.09074 * 23 22 21 44 44 H 1.09004 * 109.41792 * 169.27281 * 23 22 21 45 45 H 1.07997 * 119.86679 * 359.49559 * 25 24 23 46 46 H 1.08002 * 120.06555 * 179.97438 * 26 25 24 47 47 H 1.07996 * 120.05076 * 179.78788 * 27 26 25 48 48 H 1.08002 * 119.85375 * 180.29608 * 28 27 26 49 49 H 1.08999 * 110.36708 * 94.47957 * 30 15 14 50 50 H 1.08997 * 110.36996 * 216.80372 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.3942 -4.7590 -0.8578 13 6 0.2631 -4.8661 1.3284 14 6 -0.1196 -6.3562 1.4494 15 7 0.8349 -7.1198 0.6325 16 6 0.8277 -8.4564 0.4596 17 8 1.6679 -8.9820 -0.2395 18 6 -0.2244 -9.2978 1.1350 19 6 -0.0076 -10.7695 0.7772 20 1 0.0008 -10.8775 -0.3074 21 8 1.2449 -11.2047 1.3052 22 6 1.4506 -12.6159 1.1750 23 6 0.5073 -13.3349 2.1410 24 6 -0.8917 -12.7960 1.9834 25 6 -1.9507 -13.5303 2.4933 26 6 -3.2439 -13.0610 2.3752 27 6 -3.4839 -11.8564 1.7406 28 6 -2.4292 -11.1223 1.2360 29 6 -1.1304 -11.5934 1.3520 30 6 1.8050 -6.1819 0.0386 31 1 -0.4849 0.8401 0.0004 32 1 0.3555 -2.3881 0.0002 33 1 2.6847 -3.7146 0.8894 34 1 2.6846 -3.7147 -0.8905 35 1 -0.6289 -4.2430 1.2629 36 1 0.8885 -4.5592 2.1666 37 1 -1.1324 -6.5103 1.0772 38 1 -0.0547 -6.6746 2.4899 39 1 -1.2124 -8.9835 0.7983 40 1 -0.1518 -9.1724 2.2153 41 1 1.2330 -12.9250 0.1526 42 1 2.4847 -12.8594 1.4189 43 1 0.8447 -13.1733 3.1648 44 1 0.5109 -14.4030 1.9235 45 1 -1.7638 -14.4736 2.9848 46 1 -4.0667 -13.6363 2.7735 47 1 -4.4945 -11.4881 1.6435 48 1 -2.6170 -10.1791 0.7446 49 1 2.6968 -6.1136 0.6616 50 1 2.0695 -6.4980 -0.9704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690751440.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:41 Heat of formation + Delta-G solvation = -45.235131 kcal Electronic energy + Delta-G solvation = -29518.228520 eV Core-core repulsion = 25510.157587 eV Total energy + Delta-G solvation = -4008.070933 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.88930 -39.80978 -37.96860 -37.36687 -34.65860 -34.07414 -32.61508 -32.16541 -30.50734 -30.06980 -29.21632 -28.50658 -25.62691 -24.44747 -24.07404 -23.01957 -22.40347 -21.88617 -20.38583 -19.99703 -19.08610 -17.77507 -17.18032 -16.88582 -16.64867 -16.22344 -16.05642 -15.72803 -15.10641 -14.79732 -14.64129 -14.33344 -14.18689 -13.82850 -13.65488 -13.55028 -13.46448 -13.11930 -13.01974 -12.85152 -12.56008 -12.45322 -12.40539 -12.26113 -12.04184 -11.69264 -11.60088 -11.28825 -11.16274 -10.91567 -10.84336 -10.65677 -10.47933 -10.37384 -10.07181 -9.90189 -9.75605 -9.67308 -9.14199 -8.96693 -8.87632 -8.55509 -6.93067 -5.77388 -3.05851 0.92925 0.98509 2.68556 2.98537 3.32777 3.44417 3.48754 3.49708 3.52154 4.17543 4.25577 4.41128 4.51019 4.54111 4.62391 4.73265 4.74713 4.79081 4.89241 4.91927 4.98738 5.02616 5.10686 5.16996 5.19615 5.28006 5.34364 5.43808 5.51008 5.53045 5.56747 5.60711 5.61605 5.68681 5.70927 5.93289 6.05695 6.06125 6.06915 6.12989 6.13540 6.18976 6.26691 6.40457 6.47699 6.59783 6.73146 6.85861 6.91893 7.58205 7.69615 8.22075 8.41743 9.53044 10.10096 10.45177 11.45482 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.001830 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.087974 B =15293.324257 C =16141.654220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.164 3.836 11 C -0.105 4.105 12 H 0.084 0.916 13 C -0.120 4.120 14 C 0.098 3.902 15 N -0.619 5.619 16 C 0.530 3.470 17 O -0.532 6.532 18 C -0.128 4.128 19 C 0.149 3.851 20 H 0.080 0.920 21 O -0.356 6.356 22 C 0.060 3.940 23 C -0.117 4.117 24 C -0.070 4.070 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.121 4.121 28 C -0.110 4.110 29 C -0.113 4.113 30 C 0.114 3.886 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.055 0.945 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.069 0.931 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.434 -29.953 5.738 31.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.125 4.125 12 H 0.102 0.898 13 C -0.158 4.158 14 C -0.025 4.025 15 N -0.354 5.354 16 C 0.318 3.682 17 O -0.409 6.409 18 C -0.168 4.168 19 C 0.090 3.910 20 H 0.097 0.903 21 O -0.274 6.274 22 C -0.017 4.017 23 C -0.154 4.154 24 C -0.070 4.070 25 C -0.137 4.137 26 C -0.135 4.135 27 C -0.139 4.139 28 C -0.128 4.128 29 C -0.114 4.114 30 C -0.009 4.009 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.073 0.927 42 H 0.118 0.882 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.087 0.913 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.714 -30.071 5.439 31.089 hybrid contribution -0.269 0.794 0.059 0.840 sum -5.983 -29.277 5.498 30.383 Atomic orbital electron populations 1.69646 1.05091 1.25759 1.57809 1.24735 0.95544 0.97690 1.03039 0.86253 0.78506 0.83481 0.77862 1.21274 1.21712 1.21281 1.19192 0.91043 0.84134 1.42678 0.91210 1.42295 1.05840 0.99809 1.89553 1.20553 0.92794 0.84905 0.98174 1.22602 0.98042 0.93750 0.98088 0.89778 1.22633 1.01617 0.93089 0.98488 1.22148 0.92644 0.92826 0.94846 1.48555 1.31532 1.05628 1.49653 1.20024 0.86002 0.80726 0.81461 1.90716 1.39421 1.71292 1.39441 1.21775 0.99261 0.92540 1.03231 1.20515 0.81881 0.91160 0.97434 0.90275 1.88175 1.35084 1.22249 1.81879 1.22581 0.99609 0.81341 0.98148 1.21177 0.92019 1.00394 1.01823 1.19519 0.95445 0.94209 0.97872 1.21076 0.92396 0.99922 1.00336 1.21140 0.96742 0.96440 0.99209 1.21124 0.99046 0.95150 0.98593 1.21107 0.91769 1.00002 0.99943 1.20231 0.95370 0.95725 1.00050 1.22279 0.91817 0.87818 0.98964 0.93486 0.78247 0.95979 0.96002 0.89488 0.90197 0.91583 0.91599 0.87417 0.87930 0.92668 0.88221 0.89603 0.89762 0.85994 0.85955 0.85765 0.85603 0.91261 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.02 5.45 -59.91 -0.33 -18.35 16 10 C 0.16 3.20 5.71 -4.04 -0.02 3.18 16 11 C -0.11 -1.64 3.12 -88.35 -0.28 -1.92 16 12 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 13 C -0.12 -1.66 6.12 -24.90 -0.15 -1.82 16 14 C 0.10 1.10 6.48 -3.07 -0.02 1.08 16 15 N -0.62 -8.28 3.32 -170.39 -0.57 -8.85 16 16 C 0.53 7.36 7.72 -10.99 -0.08 7.28 16 17 O -0.53 -9.30 15.64 -9.73 -0.15 -9.45 16 18 C -0.13 -1.31 4.29 -27.88 -0.12 -1.43 16 19 C 0.15 1.61 2.29 -27.90 -0.06 1.54 16 20 H 0.08 0.92 7.96 -51.93 -0.41 0.50 16 21 O -0.36 -4.38 9.61 -50.52 -0.49 -4.87 16 22 C 0.06 0.53 6.85 37.14 0.25 0.79 16 23 C -0.12 -0.86 6.00 -27.87 -0.17 -1.02 16 24 C -0.07 -0.62 5.78 -104.59 -0.60 -1.22 16 25 C -0.12 -0.90 9.67 -39.51 -0.38 -1.28 16 26 C -0.12 -0.83 10.05 -39.63 -0.40 -1.23 16 27 C -0.12 -0.88 10.05 -39.64 -0.40 -1.28 16 28 C -0.11 -0.90 9.08 -39.50 -0.36 -1.26 16 29 C -0.11 -1.07 5.47 -104.61 -0.57 -1.64 16 30 C 0.11 1.66 6.38 -2.41 -0.02 1.64 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.38 9.83 7.53 -40.82 -0.31 9.52 16 33 H 0.02 0.44 8.11 -51.93 -0.42 0.02 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.16 8.01 -51.93 -0.42 0.75 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.11 0.83 6.32 -51.93 -0.33 0.50 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.47 8.07 -51.93 -0.42 0.05 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 47 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 48 H 0.13 0.82 6.45 -52.49 -0.34 0.49 16 49 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 50 H 0.08 1.16 8.03 -51.93 -0.42 0.74 16 LS Contribution 400.62 15.07 6.04 6.04 Total: -1.00 -33.88 400.62 -11.52 -45.39 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -8.10 Total: 5.80 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -3.63 Total: -5.87 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.17 Total: -54.32 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.64 Total: -14.32 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.88 -11.52 -45.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690751440.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.158 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds