Wall clock time and date at job start Wed Apr 1 2020 02:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00384 * 2 1 4 4 H 1.48493 * 109.47363 * 240.00584 * 3 2 1 5 5 H 1.48498 * 109.46786 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47192 * 120.00105 * 3 2 1 7 7 C 1.38811 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00371 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99846 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46816 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.88851 * 57.42576 * 11 10 9 13 13 C 1.55160 * 111.00455 * 293.54383 * 11 10 9 14 14 C 1.54321 * 102.94340 * 206.42455 * 13 11 10 15 15 N 1.47015 * 107.27230 * 22.19324 * 14 13 11 16 16 C 1.34782 * 125.65137 * 181.02505 * 15 14 13 17 17 O 1.21283 * 119.99858 * 180.02562 * 16 15 14 18 18 C 1.50695 * 119.99755 * 0.02562 * 16 15 14 19 19 C 1.53001 * 109.47056 * 180.02562 * 18 16 15 20 20 H 1.08998 * 109.21220 * 304.61125 * 19 18 16 21 21 O 1.42724 * 109.33764 * 64.20915 * 19 18 16 22 22 C 1.43212 * 113.13307 * 172.06959 * 21 19 18 23 23 C 1.52974 * 108.49174 * 289.34398 * 22 21 19 24 24 C 1.50745 * 109.76972 * 49.18378 * 23 22 21 25 25 C 1.38589 * 118.76808 * 163.22424 * 24 23 22 26 26 C 1.38076 * 120.27491 * 179.50682 * 25 24 23 27 27 C 1.38259 * 119.86225 * 0.28460 * 26 25 24 28 28 C 1.38053 * 119.89829 * 359.51908 * 27 26 25 29 29 C 1.37909 * 121.34884 * 342.91409 * 24 23 22 30 30 C 1.47425 * 108.70441 * 1.28594 * 15 14 13 31 31 H 0.96997 * 119.99550 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00218 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.47052 * 59.99708 * 10 9 7 34 34 H 1.08995 * 109.47254 * 299.99341 * 10 9 7 35 35 H 1.09005 * 110.71697 * 88.06012 * 13 11 10 36 36 H 1.08995 * 110.72146 * 324.79056 * 13 11 10 37 37 H 1.08999 * 109.88239 * 262.77737 * 14 13 11 38 38 H 1.09004 * 110.01013 * 141.68193 * 14 13 11 39 39 H 1.09001 * 109.47242 * 60.00542 * 18 16 15 40 40 H 1.09002 * 109.47632 * 300.00396 * 18 16 15 41 41 H 1.08994 * 109.63507 * 49.04422 * 22 21 19 42 42 H 1.08997 * 109.63502 * 169.44368 * 22 21 19 43 43 H 1.08998 * 109.42241 * 289.09074 * 23 22 21 44 44 H 1.09004 * 109.41792 * 169.27281 * 23 22 21 45 45 H 1.07997 * 119.86679 * 359.49559 * 25 24 23 46 46 H 1.08002 * 120.06555 * 179.97438 * 26 25 24 47 47 H 1.07996 * 120.05076 * 179.78788 * 27 26 25 48 48 H 1.08002 * 119.85375 * 180.29608 * 28 27 26 49 49 H 1.08999 * 110.36708 * 94.47957 * 30 15 14 50 50 H 1.08997 * 110.36996 * 216.80372 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.3942 -4.7590 -0.8578 13 6 0.2631 -4.8661 1.3284 14 6 -0.1196 -6.3562 1.4494 15 7 0.8349 -7.1198 0.6325 16 6 0.8277 -8.4564 0.4596 17 8 1.6679 -8.9820 -0.2395 18 6 -0.2244 -9.2978 1.1350 19 6 -0.0076 -10.7695 0.7772 20 1 0.0008 -10.8775 -0.3074 21 8 1.2449 -11.2047 1.3052 22 6 1.4506 -12.6159 1.1750 23 6 0.5073 -13.3349 2.1410 24 6 -0.8917 -12.7960 1.9834 25 6 -1.9507 -13.5303 2.4933 26 6 -3.2439 -13.0610 2.3752 27 6 -3.4839 -11.8564 1.7406 28 6 -2.4292 -11.1223 1.2360 29 6 -1.1304 -11.5934 1.3520 30 6 1.8050 -6.1819 0.0386 31 1 -0.4849 0.8401 0.0004 32 1 0.3555 -2.3881 0.0002 33 1 2.6847 -3.7146 0.8894 34 1 2.6846 -3.7147 -0.8905 35 1 -0.6289 -4.2430 1.2629 36 1 0.8885 -4.5592 2.1666 37 1 -1.1324 -6.5103 1.0772 38 1 -0.0547 -6.6746 2.4899 39 1 -1.2124 -8.9835 0.7983 40 1 -0.1518 -9.1724 2.2153 41 1 1.2330 -12.9250 0.1526 42 1 2.4847 -12.8594 1.4189 43 1 0.8447 -13.1733 3.1648 44 1 0.5109 -14.4030 1.9235 45 1 -1.7638 -14.4736 2.9848 46 1 -4.0667 -13.6363 2.7735 47 1 -4.4945 -11.4881 1.6435 48 1 -2.6170 -10.1791 0.7446 49 1 2.6968 -6.1136 0.6616 50 1 2.0695 -6.4980 -0.9704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690751440.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:39 Heat of formation + Delta-G solvation = -64.551017 kcal Electronic energy + Delta-G solvation = -29519.066120 eV Core-core repulsion = 25510.157587 eV Total energy + Delta-G solvation = -4008.908533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.64199 -40.80501 -38.93238 -38.30106 -36.41495 -34.79071 -33.91372 -33.18439 -31.91746 -30.92193 -30.27937 -29.42389 -27.12293 -25.46945 -24.76199 -24.22224 -23.87216 -22.61849 -21.34429 -21.00008 -20.11422 -19.15016 -18.53814 -17.87074 -17.53737 -17.12235 -17.00519 -16.50635 -16.38575 -15.91015 -15.64124 -15.42889 -15.24095 -14.94154 -14.87015 -14.73145 -14.51794 -14.15014 -13.96309 -13.92470 -13.77830 -13.38754 -13.26141 -13.04556 -12.99897 -12.91902 -12.71319 -12.64547 -12.39878 -12.23876 -12.12128 -11.88546 -11.76414 -11.65613 -11.60446 -11.54598 -10.94047 -10.90745 -10.56888 -9.70993 -9.65104 -9.54492 -8.98133 -7.93852 -5.22046 0.35594 0.44430 1.48976 1.51454 1.57505 1.62910 1.94647 2.57375 2.71656 2.85533 3.31866 3.39950 3.57558 3.64424 3.67146 3.81011 3.86208 3.90783 3.97113 4.12019 4.20384 4.26162 4.30064 4.31759 4.33242 4.40654 4.45654 4.56929 4.59981 4.61677 4.65357 4.67266 4.79051 4.82718 4.85863 4.89369 4.97123 5.03347 5.08010 5.09268 5.17086 5.24222 5.28860 5.42484 5.51228 5.51554 5.60914 5.62895 6.07650 6.18579 6.28575 6.53100 7.14753 7.35770 8.10357 8.35504 9.29220 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.001830 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.087974 B =15293.324257 C =16141.654220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.740 5.740 10 C 0.164 3.836 11 C -0.096 4.096 12 H 0.079 0.921 13 C -0.117 4.117 14 C 0.104 3.896 15 N -0.620 5.620 16 C 0.525 3.475 17 O -0.575 6.575 18 C -0.119 4.119 19 C 0.150 3.850 20 H 0.061 0.939 21 O -0.385 6.385 22 C 0.053 3.947 23 C -0.111 4.111 24 C -0.088 4.088 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.127 4.127 28 C -0.118 4.118 29 C -0.130 4.130 30 C 0.119 3.881 31 H 0.252 0.748 32 H 0.377 0.623 33 H 0.025 0.975 34 H 0.018 0.982 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.136 0.864 40 H 0.114 0.886 41 H 0.052 0.948 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.144 0.856 48 H 0.139 0.861 49 H 0.068 0.932 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.558 -31.199 6.966 32.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.801 3.199 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.091 0.909 9 N -0.383 5.383 10 C 0.037 3.963 11 C -0.115 4.115 12 H 0.097 0.903 13 C -0.155 4.155 14 C -0.018 4.018 15 N -0.353 5.353 16 C 0.316 3.684 17 O -0.455 6.455 18 C -0.158 4.158 19 C 0.091 3.909 20 H 0.078 0.922 21 O -0.304 6.304 22 C -0.024 4.024 23 C -0.148 4.148 24 C -0.088 4.088 25 C -0.143 4.143 26 C -0.138 4.138 27 C -0.145 4.145 28 C -0.136 4.136 29 C -0.131 4.131 30 C -0.004 4.004 31 H 0.060 0.940 32 H 0.209 0.791 33 H 0.043 0.957 34 H 0.036 0.964 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.154 0.846 40 H 0.132 0.868 41 H 0.070 0.930 42 H 0.127 0.873 43 H 0.106 0.894 44 H 0.123 0.877 45 H 0.159 0.841 46 H 0.162 0.838 47 H 0.162 0.838 48 H 0.157 0.843 49 H 0.086 0.914 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.825 -31.341 6.682 32.764 hybrid contribution 0.117 1.110 -0.341 1.167 sum -6.709 -30.231 6.341 31.609 Atomic orbital electron populations 1.69791 1.06418 1.26144 1.59332 1.25526 0.96438 1.00932 1.03667 0.85234 0.77233 0.79316 0.78099 1.20655 1.22051 1.20435 1.19580 0.91475 0.85415 1.41434 0.90896 1.42446 1.05700 1.00768 1.89408 1.20645 0.93431 0.84435 0.97799 1.22381 0.97323 0.92656 0.99158 0.90272 1.22568 1.00902 0.95149 0.96857 1.22244 0.93171 0.90381 0.96008 1.48626 1.31528 1.05615 1.49574 1.20692 0.86140 0.80749 0.80851 1.90695 1.41295 1.72052 1.41446 1.21817 0.99102 0.91526 1.03351 1.20459 0.82138 0.91782 0.96488 0.92175 1.88119 1.36107 1.24095 1.82091 1.22767 1.00758 0.80224 0.98614 1.21150 0.91045 1.01268 1.01319 1.19772 0.96403 0.94361 0.98229 1.21339 0.92307 1.00542 1.00159 1.21491 0.97279 0.96496 0.98551 1.21430 0.99779 0.95193 0.98113 1.21309 0.91468 1.00753 1.00066 1.20187 0.95338 0.96234 1.01298 1.22089 0.92102 0.87529 0.98676 0.93957 0.79068 0.95726 0.96443 0.89932 0.90971 0.88984 0.89273 0.84620 0.86808 0.92982 0.87282 0.89418 0.87687 0.84132 0.83772 0.83802 0.84344 0.91385 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.07 13.06 21.65 0.28 -57.78 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 3 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.74 -36.77 5.45 -343.44 -1.87 -38.65 16 10 C 0.16 6.43 5.71 86.38 0.49 6.92 16 11 C -0.10 -2.96 3.12 -9.32 -0.03 -2.99 16 12 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 13 C -0.12 -3.10 6.12 31.78 0.19 -2.90 16 14 C 0.10 2.08 6.48 86.73 0.56 2.64 16 15 N -0.62 -15.83 3.32 -811.37 -2.70 -18.53 16 16 C 0.53 14.27 7.72 87.65 0.68 14.95 16 17 O -0.58 -20.50 15.64 11.58 0.18 -20.32 16 18 C -0.12 -2.25 4.29 29.85 0.13 -2.12 16 19 C 0.15 3.20 2.29 29.84 0.07 3.27 16 20 H 0.06 1.46 7.96 -2.39 -0.02 1.44 16 21 O -0.39 -9.59 9.61 -134.36 -1.29 -10.88 16 22 C 0.05 0.93 6.85 71.97 0.49 1.43 16 23 C -0.11 -1.50 6.00 29.85 0.18 -1.32 16 24 C -0.09 -1.42 5.78 -19.84 -0.11 -1.53 16 25 C -0.13 -1.61 9.67 22.32 0.22 -1.39 16 26 C -0.12 -1.38 10.05 22.24 0.22 -1.15 16 27 C -0.13 -1.53 10.05 22.23 0.22 -1.31 16 28 C -0.12 -1.69 9.08 22.32 0.20 -1.49 16 29 C -0.13 -2.32 5.47 -19.86 -0.11 -2.43 16 30 C 0.12 3.46 6.38 86.93 0.55 4.01 16 31 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.38 19.55 7.53 -92.71 -0.70 18.85 16 33 H 0.02 0.97 8.11 -2.39 -0.02 0.95 16 34 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.07 2.03 8.01 -2.39 -0.02 2.01 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.14 1.74 6.32 -2.39 -0.02 1.73 16 40 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.05 0.91 8.07 -2.39 -0.02 0.89 16 42 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.10 0.93 8.14 -2.38 -0.02 0.92 16 45 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 46 H 0.14 0.95 8.06 -2.91 -0.02 0.92 16 47 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 48 H 0.14 1.48 6.45 -2.91 -0.02 1.47 16 49 H 0.07 1.98 8.04 -2.39 -0.02 1.96 16 50 H 0.07 2.06 8.03 -2.39 -0.02 2.04 16 Total: -1.00 -73.57 400.62 2.13 -71.43 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.23 Total: 28.86 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 5.27 Total: -2.01 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -4.29 Total: -114.96 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -1.11 Total: -31.20 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -73.57 2.13 -71.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690751440.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.882 kcal (2) G-P(sol) polarization free energy of solvation -73.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds