Wall clock time and date at job start Wed Apr 1 2020 03:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00007 * 2 1 4 4 H 1.48496 * 109.47234 * 270.00240 * 3 2 1 5 5 H 1.48501 * 109.47051 * 30.00256 * 3 2 1 6 6 H 1.48496 * 109.47002 * 150.00260 * 3 2 1 7 7 C 1.38812 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99879 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99996 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00002 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85279 * 23.80679 * 10 9 7 12 12 C 1.53784 * 113.61271 * 154.99987 * 10 9 7 13 13 C 1.53778 * 87.07861 * 139.98284 * 12 10 9 14 14 H 1.08998 * 113.61647 * 89.20431 * 13 12 10 15 15 C 1.53006 * 113.61232 * 220.02062 * 13 12 10 16 16 N 1.46497 * 109.46905 * 183.47103 * 15 13 12 17 17 C 1.34779 * 119.99727 * 180.27113 * 16 15 13 18 18 O 1.21284 * 120.00015 * 359.72665 * 17 16 15 19 19 C 1.50699 * 119.99908 * 179.72034 * 17 16 15 20 20 O 1.42905 * 109.46969 * 179.97438 * 19 17 16 21 21 C 1.42901 * 113.99943 * 179.97438 * 20 19 17 22 22 C 1.50701 * 109.47128 * 180.02562 * 21 20 19 23 23 C 1.32563 * 119.99795 * 136.24517 * 22 21 20 24 24 C 1.47807 * 120.00323 * 8.03603 * 23 22 21 25 25 C 1.39533 * 120.14196 * 215.11012 * 24 23 22 26 26 C 1.37982 * 119.85261 * 179.67473 * 25 24 23 27 27 C 1.38339 * 120.14105 * 0.62141 * 26 25 24 28 28 C 1.38342 * 120.28724 * 359.67236 * 27 26 25 29 29 C 1.37967 * 120.14447 * 0.02562 * 28 27 26 30 30 C 1.53782 * 87.17220 * 334.60704 * 13 12 10 31 31 H 0.96998 * 120.00308 * 359.97438 * 1 2 3 32 32 H 0.97003 * 120.00091 * 359.97438 * 9 7 2 33 33 H 1.08997 * 113.61486 * 25.42965 * 12 10 9 34 34 H 1.08999 * 113.68910 * 254.53964 * 12 10 9 35 35 H 1.08994 * 109.47259 * 63.46916 * 15 13 12 36 36 H 1.09005 * 109.46741 * 303.47056 * 15 13 12 37 37 H 0.96994 * 120.00563 * 359.97438 * 16 15 13 38 38 H 1.08993 * 109.47513 * 300.00313 * 19 17 16 39 39 H 1.09000 * 109.47134 * 60.00669 * 19 17 16 40 40 H 1.08997 * 109.47503 * 300.00250 * 21 20 19 41 41 H 1.09000 * 109.46460 * 60.00790 * 21 20 19 42 42 H 1.08000 * 120.00022 * 316.24926 * 22 21 20 43 43 H 1.08001 * 119.99843 * 188.03130 * 23 22 21 44 44 H 1.07996 * 120.07428 * 359.97438 * 25 24 23 45 45 H 1.08007 * 119.92719 * 180.31967 * 26 25 24 46 46 H 1.08002 * 119.85532 * 179.69940 * 27 26 25 47 47 H 1.07999 * 119.92571 * 180.02562 * 28 27 26 48 48 H 1.07998 * 120.07895 * 180.02562 * 29 28 27 49 49 H 1.09007 * 113.60850 * 139.94160 * 30 13 12 50 50 H 1.08993 * 113.61713 * 270.84211 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.0656 -3.5639 0.4049 12 6 1.2602 -4.8288 0.5950 13 6 1.8481 -5.6975 -0.5295 14 1 2.7979 -6.1646 -0.2692 15 6 0.8449 -6.6851 -1.1290 16 7 1.5180 -7.5188 -2.1281 17 6 0.8251 -8.4628 -2.7953 18 8 -0.3545 -8.6256 -2.5650 19 6 1.5160 -9.3161 -3.8275 20 8 0.5781 -10.2355 -4.3907 21 6 1.1342 -11.0962 -5.3867 22 6 0.0625 -12.0179 -5.9093 23 6 -0.0411 -12.2427 -7.2116 24 6 0.9965 -11.7357 -8.1340 25 6 0.6442 -11.2923 -9.4093 26 6 1.6168 -10.8139 -10.2631 27 6 2.9404 -10.7852 -9.8619 28 6 3.2971 -11.2291 -8.6011 29 6 2.3334 -11.7040 -7.7355 30 6 2.0011 -4.4032 -1.3457 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 0.0002 33 1 0.1799 -4.7002 0.5281 34 1 1.5906 -5.1221 1.5914 35 1 0.0322 -6.1348 -1.6030 36 1 0.4423 -7.3188 -0.3387 37 1 2.4613 -7.3884 -2.3126 38 1 1.9186 -8.6792 -4.6150 39 1 2.3286 -9.8694 -3.3567 40 1 1.5281 -10.4959 -6.2068 41 1 1.9393 -11.6860 -4.9486 42 1 -0.6210 -12.4953 -5.2228 43 1 -0.8838 -12.7964 -7.5986 44 1 -0.3881 -11.3190 -9.7255 45 1 1.3448 -10.4655 -11.2486 46 1 3.6986 -10.4143 -10.5358 47 1 4.3321 -11.2037 -8.2938 48 1 2.6130 -12.0499 -6.7513 49 1 2.9300 -4.3527 -1.9139 50 1 1.1238 -4.1581 -1.9442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691101242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:35 Heat of formation + Delta-G solvation = -4.381759 kcal Electronic energy + Delta-G solvation = -27731.890274 eV Core-core repulsion = 23725.590876 eV Total energy + Delta-G solvation = -4006.299398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.06366 -39.75555 -38.59718 -37.77027 -35.08550 -34.65904 -33.29808 -31.51219 -30.59581 -30.23788 -29.01525 -27.03352 -25.86531 -25.09692 -23.78988 -22.96838 -22.74521 -21.08347 -20.80201 -19.76853 -19.05842 -17.69706 -17.17997 -17.00700 -16.81039 -16.65401 -16.04234 -15.77303 -15.37179 -15.12819 -14.88342 -14.68426 -14.47824 -14.05112 -13.85621 -13.74664 -13.51792 -13.27137 -13.06137 -12.93147 -12.69023 -12.46704 -12.02641 -11.90035 -11.81804 -11.51937 -11.40508 -11.24116 -11.16253 -10.84362 -10.54133 -10.52877 -10.25160 -10.14159 -9.94502 -9.84048 -9.80795 -9.48901 -9.32705 -9.05126 -8.87431 -8.70607 -6.97023 -5.78816 -3.07813 0.54032 0.95555 1.83709 2.53705 2.73382 3.39742 3.42119 3.47098 3.49075 3.78359 4.28595 4.40567 4.51462 4.53485 4.57607 4.65991 4.69106 4.78066 4.83522 4.87700 4.92722 4.97664 5.00900 5.02052 5.07669 5.22165 5.32506 5.45989 5.49645 5.49827 5.59659 5.81482 5.83917 5.87967 5.90751 5.92641 6.07735 6.08470 6.14037 6.24128 6.27582 6.30417 6.35061 6.42816 6.53764 6.57879 6.70725 6.81781 7.10519 7.42619 7.68182 8.15714 8.39636 9.50655 10.09088 10.43185 11.43500 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.001499 C = 0.001408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.626250 B =18669.548168 C =19877.514849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.142 4.142 13 C -0.127 4.127 14 H 0.088 0.912 15 C 0.133 3.867 16 N -0.724 5.724 17 C 0.510 3.490 18 O -0.521 6.521 19 C 0.045 3.955 20 O -0.360 6.360 21 C 0.078 3.922 22 C -0.132 4.132 23 C -0.115 4.115 24 C -0.061 4.061 25 C -0.107 4.107 26 C -0.119 4.119 27 C -0.119 4.119 28 C -0.121 4.121 29 C -0.117 4.117 30 C -0.161 4.161 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.400 0.600 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.053 0.947 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.290 -28.742 -16.831 34.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.053 3.947 11 H 0.093 0.907 12 C -0.182 4.182 13 C -0.146 4.146 14 H 0.106 0.894 15 C 0.011 3.989 16 N -0.377 5.377 17 C 0.294 3.706 18 O -0.396 6.396 19 C -0.035 4.035 20 O -0.278 6.278 21 C 0.002 3.998 22 C -0.150 4.150 23 C -0.133 4.133 24 C -0.061 4.061 25 C -0.125 4.125 26 C -0.137 4.137 27 C -0.137 4.137 28 C -0.139 4.139 29 C -0.135 4.135 30 C -0.202 4.202 31 H 0.066 0.934 32 H 0.220 0.780 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.234 0.766 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.072 0.928 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.324 -28.673 -16.573 33.717 hybrid contribution 0.874 0.965 -0.279 1.332 sum 7.198 -27.708 -16.852 33.220 Atomic orbital electron populations 1.69659 1.05138 1.25761 1.57386 1.24776 0.95524 0.97800 1.02825 0.86188 0.78645 0.83819 0.77509 1.21714 1.21752 1.20748 1.19303 0.91065 0.84259 1.43001 0.91096 1.42414 1.05779 0.99881 1.86972 1.21550 0.95307 0.85054 0.92741 0.90675 1.23445 1.01091 0.96979 0.96683 1.22642 0.98362 0.94380 0.99233 0.89356 1.21453 0.95458 0.91912 0.90118 1.45924 1.13771 1.36525 1.41498 1.20191 0.87511 0.80816 0.82046 1.90744 1.15516 1.68240 1.65100 1.22200 0.92311 0.92747 0.96251 1.88029 1.34786 1.49216 1.55759 1.22027 0.95025 0.91786 0.90912 1.23026 0.99247 0.97111 0.95624 1.21681 0.97701 1.01425 0.92470 1.19130 0.93267 0.99387 0.94305 1.21307 0.99661 0.98403 0.93104 1.21145 0.93125 0.99675 0.99803 1.21254 0.96414 0.99588 0.96463 1.21117 0.99435 0.99236 0.94103 1.21484 0.92280 0.99987 0.99741 1.23979 1.01339 0.94968 0.99964 0.93435 0.78050 0.90081 0.91966 0.91126 0.91671 0.76594 0.90193 0.90307 0.91219 0.92146 0.85443 0.85311 0.85725 0.85848 0.85983 0.85809 0.85642 0.92776 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.76 9.97 -15.06 -0.15 -6.91 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -17.72 5.40 -52.55 -0.28 -18.00 16 10 C 0.17 3.16 4.48 -67.03 -0.30 2.86 16 11 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 12 C -0.14 -2.23 7.40 -25.92 -0.19 -2.43 16 13 C -0.13 -1.65 3.75 -89.81 -0.34 -1.98 16 14 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 15 C 0.13 1.74 5.50 -4.04 -0.02 1.72 16 16 N -0.72 -7.93 5.56 -60.29 -0.33 -8.26 16 17 C 0.51 6.59 7.91 -10.98 -0.09 6.51 16 18 O -0.52 -9.36 16.50 -14.36 -0.24 -9.60 16 19 C 0.05 0.41 6.42 36.01 0.23 0.65 16 20 O -0.36 -4.20 9.86 -55.14 -0.54 -4.74 16 21 C 0.08 0.64 4.53 36.01 0.16 0.80 16 22 C -0.13 -1.04 9.84 -36.22 -0.36 -1.40 16 23 C -0.11 -0.82 9.81 -37.58 -0.37 -1.18 16 24 C -0.06 -0.46 5.17 -105.01 -0.54 -1.00 16 25 C -0.11 -0.76 9.79 -39.19 -0.38 -1.14 16 26 C -0.12 -0.78 10.03 -39.64 -0.40 -1.17 16 27 C -0.12 -0.74 10.04 -39.51 -0.40 -1.14 16 28 C -0.12 -0.75 10.03 -39.64 -0.40 -1.15 16 29 C -0.12 -0.79 7.42 -39.19 -0.29 -1.08 16 30 C -0.16 -2.61 7.45 -25.83 -0.19 -2.80 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.39 10.24 7.92 -40.82 -0.32 9.92 16 33 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.40 3.14 8.47 -40.82 -0.35 2.79 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.55 5.32 -51.93 -0.28 0.28 16 41 H 0.06 0.36 7.51 -51.93 -0.39 -0.03 16 42 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.12 0.57 8.06 -52.48 -0.42 0.15 16 46 H 0.12 0.54 8.06 -52.49 -0.42 0.11 16 47 H 0.12 0.53 8.06 -52.49 -0.42 0.10 16 48 H 0.13 0.68 5.83 -52.49 -0.31 0.37 16 49 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 50 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 LS Contribution 416.63 15.07 6.28 6.28 Total: -1.00 -35.11 416.63 -11.46 -46.56 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -7.92 Total: 9.31 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -4.12 Total: -11.34 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.11 Total: -53.72 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.78 Total: -14.34 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.11 -11.46 -46.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691101242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.183 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds