Wall clock time and date at job start Wed Apr 1 2020 03:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00007 * 2 1 4 4 H 1.48496 * 109.47234 * 270.00240 * 3 2 1 5 5 H 1.48501 * 109.47051 * 30.00256 * 3 2 1 6 6 H 1.48496 * 109.47002 * 150.00260 * 3 2 1 7 7 C 1.38812 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99879 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99996 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00002 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85279 * 23.80679 * 10 9 7 12 12 C 1.53784 * 113.61271 * 154.99987 * 10 9 7 13 13 C 1.53778 * 87.07861 * 139.98284 * 12 10 9 14 14 H 1.08998 * 113.61647 * 89.20431 * 13 12 10 15 15 C 1.53006 * 113.61232 * 220.02062 * 13 12 10 16 16 N 1.46497 * 109.46905 * 183.47103 * 15 13 12 17 17 C 1.34779 * 119.99727 * 180.27113 * 16 15 13 18 18 O 1.21284 * 120.00015 * 359.72665 * 17 16 15 19 19 C 1.50699 * 119.99908 * 179.72034 * 17 16 15 20 20 O 1.42905 * 109.46969 * 179.97438 * 19 17 16 21 21 C 1.42901 * 113.99943 * 179.97438 * 20 19 17 22 22 C 1.50701 * 109.47128 * 180.02562 * 21 20 19 23 23 C 1.32563 * 119.99795 * 136.24517 * 22 21 20 24 24 C 1.47807 * 120.00323 * 8.03603 * 23 22 21 25 25 C 1.39533 * 120.14196 * 215.11012 * 24 23 22 26 26 C 1.37982 * 119.85261 * 179.67473 * 25 24 23 27 27 C 1.38339 * 120.14105 * 0.62141 * 26 25 24 28 28 C 1.38342 * 120.28724 * 359.67236 * 27 26 25 29 29 C 1.37967 * 120.14447 * 0.02562 * 28 27 26 30 30 C 1.53782 * 87.17220 * 334.60704 * 13 12 10 31 31 H 0.96998 * 120.00308 * 359.97438 * 1 2 3 32 32 H 0.97003 * 120.00091 * 359.97438 * 9 7 2 33 33 H 1.08997 * 113.61486 * 25.42965 * 12 10 9 34 34 H 1.08999 * 113.68910 * 254.53964 * 12 10 9 35 35 H 1.08994 * 109.47259 * 63.46916 * 15 13 12 36 36 H 1.09005 * 109.46741 * 303.47056 * 15 13 12 37 37 H 0.96994 * 120.00563 * 359.97438 * 16 15 13 38 38 H 1.08993 * 109.47513 * 300.00313 * 19 17 16 39 39 H 1.09000 * 109.47134 * 60.00669 * 19 17 16 40 40 H 1.08997 * 109.47503 * 300.00250 * 21 20 19 41 41 H 1.09000 * 109.46460 * 60.00790 * 21 20 19 42 42 H 1.08000 * 120.00022 * 316.24926 * 22 21 20 43 43 H 1.08001 * 119.99843 * 188.03130 * 23 22 21 44 44 H 1.07996 * 120.07428 * 359.97438 * 25 24 23 45 45 H 1.08007 * 119.92719 * 180.31967 * 26 25 24 46 46 H 1.08002 * 119.85532 * 179.69940 * 27 26 25 47 47 H 1.07999 * 119.92571 * 180.02562 * 28 27 26 48 48 H 1.07998 * 120.07895 * 180.02562 * 29 28 27 49 49 H 1.09007 * 113.60850 * 139.94160 * 30 13 12 50 50 H 1.08993 * 113.61713 * 270.84211 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.0656 -3.5639 0.4049 12 6 1.2602 -4.8288 0.5950 13 6 1.8481 -5.6975 -0.5295 14 1 2.7979 -6.1646 -0.2692 15 6 0.8449 -6.6851 -1.1290 16 7 1.5180 -7.5188 -2.1281 17 6 0.8251 -8.4628 -2.7953 18 8 -0.3545 -8.6256 -2.5650 19 6 1.5160 -9.3161 -3.8275 20 8 0.5781 -10.2355 -4.3907 21 6 1.1342 -11.0962 -5.3867 22 6 0.0625 -12.0179 -5.9093 23 6 -0.0411 -12.2427 -7.2116 24 6 0.9965 -11.7357 -8.1340 25 6 0.6442 -11.2923 -9.4093 26 6 1.6168 -10.8139 -10.2631 27 6 2.9404 -10.7852 -9.8619 28 6 3.2971 -11.2291 -8.6011 29 6 2.3334 -11.7040 -7.7355 30 6 2.0011 -4.4032 -1.3457 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 0.0002 33 1 0.1799 -4.7002 0.5281 34 1 1.5906 -5.1221 1.5914 35 1 0.0322 -6.1348 -1.6030 36 1 0.4423 -7.3188 -0.3387 37 1 2.4613 -7.3884 -2.3126 38 1 1.9186 -8.6792 -4.6150 39 1 2.3286 -9.8694 -3.3567 40 1 1.5281 -10.4959 -6.2068 41 1 1.9393 -11.6860 -4.9486 42 1 -0.6210 -12.4953 -5.2228 43 1 -0.8838 -12.7964 -7.5986 44 1 -0.3881 -11.3190 -9.7255 45 1 1.3448 -10.4655 -11.2486 46 1 3.6986 -10.4143 -10.5358 47 1 4.3321 -11.2037 -8.2938 48 1 2.6130 -12.0499 -6.7513 49 1 2.9300 -4.3527 -1.9139 50 1 1.1238 -4.1581 -1.9442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691101242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:34 Heat of formation + Delta-G solvation = -25.966693 kcal Electronic energy + Delta-G solvation = -27732.826267 eV Core-core repulsion = 23725.590876 eV Total energy + Delta-G solvation = -4007.235391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.98743 -40.36218 -39.82056 -38.57298 -36.05609 -35.60394 -35.01240 -32.26149 -31.96216 -30.97649 -29.97225 -27.98104 -26.70570 -26.44732 -25.62201 -23.44345 -23.23042 -22.46861 -21.79640 -20.53676 -20.23250 -19.05111 -18.39444 -18.01136 -17.47296 -17.30206 -16.85055 -16.65803 -16.47505 -16.21715 -15.88689 -15.68769 -15.53238 -15.13974 -15.07710 -14.67719 -14.46124 -14.26954 -14.12537 -13.56161 -13.44086 -13.35953 -13.22740 -13.15222 -12.98894 -12.90550 -12.62424 -12.54852 -12.20134 -12.06698 -11.95156 -11.67979 -11.57941 -11.53666 -11.13702 -11.08765 -10.86130 -10.76229 -10.52282 -10.09686 -9.79768 -9.21173 -8.96986 -7.93916 -5.22346 0.03993 0.49270 1.29703 1.47646 1.49428 1.56797 1.57847 1.91639 2.57250 2.90616 3.09193 3.38085 3.66409 3.76437 3.77166 3.80755 3.94875 3.98008 4.08135 4.13144 4.21927 4.24008 4.26755 4.29239 4.34611 4.36765 4.40728 4.43834 4.56868 4.58910 4.61166 4.77591 4.82245 4.98815 5.00389 5.05032 5.06361 5.15419 5.23592 5.35991 5.39059 5.40763 5.43373 5.53705 5.62184 5.64763 5.74882 5.76504 6.05600 6.10939 6.28262 6.57677 7.24307 7.33594 8.12452 8.33840 9.29633 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.001499 C = 0.001408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.626250 B =18669.548168 C =19877.514849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.974 3.026 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.142 3.858 11 H 0.083 0.917 12 C -0.138 4.138 13 C -0.093 4.093 14 H 0.126 0.874 15 C 0.138 3.862 16 N -0.708 5.708 17 C 0.504 3.496 18 O -0.581 6.581 19 C 0.048 3.952 20 O -0.397 6.397 21 C 0.079 3.921 22 C -0.151 4.151 23 C -0.110 4.110 24 C -0.080 4.080 25 C -0.122 4.122 26 C -0.131 4.131 27 C -0.127 4.127 28 C -0.128 4.128 29 C -0.124 4.124 30 C -0.153 4.153 31 H 0.250 0.750 32 H 0.371 0.629 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.420 0.580 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.124 0.876 43 H 0.139 0.861 44 H 0.132 0.868 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.144 0.856 48 H 0.138 0.862 49 H 0.071 0.929 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.537 -30.089 -17.450 36.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.803 3.197 4 H -0.216 1.216 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.368 5.368 10 C 0.033 3.967 11 H 0.101 0.899 12 C -0.178 4.178 13 C -0.112 4.112 14 H 0.144 0.856 15 C 0.014 3.986 16 N -0.362 5.362 17 C 0.291 3.709 18 O -0.461 6.461 19 C -0.031 4.031 20 O -0.316 6.316 21 C 0.004 3.996 22 C -0.169 4.169 23 C -0.128 4.128 24 C -0.080 4.080 25 C -0.140 4.140 26 C -0.148 4.148 27 C -0.145 4.145 28 C -0.145 4.145 29 C -0.141 4.141 30 C -0.194 4.194 31 H 0.058 0.942 32 H 0.202 0.798 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.257 0.743 38 H 0.122 0.878 39 H 0.135 0.865 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.142 0.858 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.156 0.844 46 H 0.157 0.843 47 H 0.162 0.838 48 H 0.155 0.845 49 H 0.090 0.910 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.671 -30.067 -17.205 35.966 hybrid contribution -0.095 1.300 -0.130 1.310 sum 9.576 -28.768 -17.334 34.925 Atomic orbital electron populations 1.69829 1.06764 1.25976 1.59794 1.25615 0.96366 1.01312 1.04003 0.85127 0.77777 0.79453 0.77338 1.21568 1.22510 1.19078 1.19756 0.91665 0.85363 1.40616 0.90136 1.42650 1.05341 1.01306 1.87505 1.22012 0.95677 0.83784 0.95248 0.89902 1.23335 0.99845 0.96025 0.98593 1.22471 0.99459 0.92845 0.96392 0.85561 1.21222 0.94979 0.91923 0.90438 1.45742 1.14567 1.35437 1.40450 1.20977 0.86921 0.80811 0.82192 1.90720 1.18238 1.70034 1.67082 1.22326 0.92042 0.92797 0.95946 1.87984 1.36730 1.50166 1.56764 1.22150 0.95455 0.91566 0.90383 1.23098 0.99916 0.97927 0.95929 1.21835 0.97797 1.00874 0.92257 1.19312 0.93853 1.00194 0.94629 1.21524 1.00387 0.98765 0.93318 1.21413 0.93345 0.99617 1.00463 1.21571 0.96756 0.99258 0.96940 1.21421 1.00388 0.98713 0.94012 1.21690 0.92088 0.99914 1.00456 1.23747 1.01093 0.96073 0.98498 0.94165 0.79750 0.91772 0.90198 0.93914 0.91712 0.74281 0.87802 0.86451 0.91029 0.89820 0.85776 0.84286 0.85048 0.84434 0.84263 0.83827 0.84457 0.91013 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.44 13.06 21.65 0.28 -60.15 16 2 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 3 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.24 -13.35 9.97 84.03 0.84 -12.51 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.73 -36.73 5.40 -320.17 -1.73 -38.46 16 10 C 0.14 5.26 4.48 45.58 0.20 5.47 16 11 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 12 C -0.14 -4.17 7.40 31.12 0.23 -3.94 16 13 C -0.09 -2.15 3.75 -10.27 -0.04 -2.19 16 14 H 0.13 2.11 8.14 -2.39 -0.02 2.10 16 15 C 0.14 3.43 5.50 86.38 0.47 3.90 16 16 N -0.71 -13.82 5.56 -463.05 -2.57 -16.39 16 17 C 0.50 12.37 7.91 87.66 0.69 13.06 16 18 O -0.58 -21.19 16.50 16.00 0.26 -20.93 16 19 C 0.05 0.76 6.42 71.24 0.46 1.22 16 20 O -0.40 -8.81 9.86 -129.94 -1.28 -10.09 16 21 C 0.08 1.16 4.53 71.24 0.32 1.49 16 22 C -0.15 -2.31 9.84 24.54 0.24 -2.07 16 23 C -0.11 -1.51 9.81 23.65 0.23 -1.28 16 24 C -0.08 -1.14 5.17 -20.12 -0.10 -1.24 16 25 C -0.12 -1.66 9.79 22.52 0.22 -1.44 16 26 C -0.13 -1.55 10.03 22.23 0.22 -1.33 16 27 C -0.13 -1.37 10.04 22.32 0.22 -1.15 16 28 C -0.13 -1.33 10.03 22.23 0.22 -1.11 16 29 C -0.12 -1.48 7.42 22.52 0.17 -1.31 16 30 C -0.15 -4.71 7.45 31.18 0.23 -4.48 16 31 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.37 20.41 7.92 -92.71 -0.73 19.68 16 33 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.04 1.32 7.87 -2.39 -0.02 1.30 16 36 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.42 4.90 8.47 -92.71 -0.79 4.12 16 38 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 1.01 5.32 -2.39 -0.01 0.99 16 41 H 0.08 0.78 7.51 -2.39 -0.02 0.77 16 42 H 0.12 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.13 1.45 8.06 -2.91 -0.02 1.42 16 45 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 46 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 47 H 0.14 0.83 8.06 -2.91 -0.02 0.81 16 48 H 0.14 1.19 5.83 -2.91 -0.02 1.18 16 49 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 50 H 0.05 1.92 7.92 -2.39 -0.02 1.90 16 Total: -1.00 -79.28 416.63 1.72 -77.56 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: -0.57 Total: 33.45 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 5.31 Total: -13.11 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -4.02 Total: -115.01 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -1.02 Total: -31.02 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -79.28 1.72 -77.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691101242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.592 kcal (2) G-P(sol) polarization free energy of solvation -79.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds