Wall clock time and date at job start Wed Apr 1 2020 03:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00148 * 2 1 4 4 H 1.48510 * 109.46948 * 274.18874 * 3 2 1 5 5 H 1.48502 * 109.47132 * 34.18555 * 3 2 1 6 6 H 1.48497 * 109.47557 * 154.18838 * 3 2 1 7 7 C 1.38810 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00496 * 162.97754 * 7 2 1 9 9 N 1.36945 * 120.00018 * 342.70023 * 7 2 1 10 10 C 1.47152 * 120.97943 * 333.56334 * 9 7 2 11 11 C 1.53295 * 108.38140 * 230.51029 * 10 9 7 12 12 O 1.42963 * 109.22206 * 307.69611 * 11 10 9 13 13 C 1.42968 * 114.16391 * 62.58365 * 12 11 10 14 14 H 1.08998 * 109.51246 * 57.39180 * 13 12 11 15 15 C 1.52996 * 109.50892 * 177.49101 * 13 12 11 16 16 N 1.46495 * 109.47697 * 300.00134 * 15 13 12 17 17 C 1.34772 * 120.00473 * 180.02562 * 16 15 13 18 18 O 1.21285 * 120.00103 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00259 * 180.02562 * 17 16 15 20 20 C 1.50701 * 109.47037 * 179.97438 * 19 17 16 21 21 C 1.31003 * 119.99688 * 124.99911 * 20 19 17 22 22 C 1.50700 * 119.99689 * 179.97438 * 21 20 19 23 23 C 1.50704 * 109.47287 * 124.99701 * 22 21 20 24 24 C 1.38227 * 120.00090 * 269.73443 * 23 22 21 25 25 C 1.38245 * 119.99645 * 179.80699 * 24 23 22 26 26 C 1.38235 * 119.99801 * 0.39709 * 25 24 23 27 27 C 1.38228 * 119.99968 * 359.84888 * 26 25 24 28 28 C 1.38235 * 120.00652 * 359.96503 * 27 26 25 29 29 C 1.47144 * 120.98162 * 153.27732 * 9 7 2 30 30 H 0.96999 * 119.99938 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.68268 * 350.23483 * 10 9 7 32 32 H 1.08997 * 109.68041 * 110.75074 * 10 9 7 33 33 H 1.09001 * 109.51251 * 67.62218 * 11 10 9 34 34 H 1.09004 * 109.50888 * 187.77800 * 11 10 9 35 35 H 1.09009 * 109.47344 * 60.00084 * 15 13 12 36 36 H 1.09006 * 109.46978 * 179.97438 * 15 13 12 37 37 H 0.97006 * 119.99657 * 359.97438 * 16 15 13 38 38 H 1.09005 * 109.47036 * 299.99596 * 19 17 16 39 39 H 1.08997 * 109.47284 * 59.99470 * 19 17 16 40 40 H 1.07997 * 120.00010 * 304.99836 * 20 19 17 41 41 H 1.07997 * 120.00302 * 359.97438 * 21 20 19 42 42 H 1.08995 * 109.47370 * 245.00201 * 22 21 20 43 43 H 1.09008 * 109.47385 * 5.00462 * 22 21 20 44 44 H 1.07997 * 120.00739 * 359.97438 * 24 23 22 45 45 H 1.07997 * 119.99427 * 180.22278 * 25 24 23 46 46 H 1.08000 * 119.99440 * 179.83486 * 26 25 24 47 47 H 1.08001 * 119.99808 * 179.97438 * 27 26 25 48 48 H 1.07993 * 120.00457 * 179.97438 * 28 27 26 49 49 H 1.09001 * 109.68529 * 249.21646 * 29 9 7 50 50 H 1.09006 * 109.68416 * 9.76697 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4092 2.0975 -1.3964 5 1 1.4947 2.6255 0.7867 6 1 3.5892 1.4162 0.6096 7 6 2.0103 -1.2021 -0.0005 8 1 3.0548 -1.2226 -0.2743 9 7 1.3720 -2.3614 0.3516 10 6 0.2074 -2.3419 1.2509 11 6 0.4435 -3.3628 2.3698 12 8 0.7775 -4.6266 1.7911 13 6 1.9871 -4.6199 1.0290 14 1 2.8123 -4.2874 1.6587 15 6 2.2742 -6.0316 0.5137 16 7 2.4180 -6.9461 1.6491 17 6 2.6765 -8.2513 1.4346 18 8 2.7896 -8.6690 0.3015 19 6 2.8238 -9.1922 2.6026 20 6 3.1067 -10.5826 2.0949 21 6 4.1662 -11.2297 2.5133 22 6 4.4488 -12.6204 2.0061 23 6 5.8352 -12.6683 1.4174 24 6 6.0262 -12.3956 0.0758 25 6 7.2986 -12.4357 -0.4633 26 6 8.3787 -12.7566 0.3375 27 6 8.1869 -13.0343 1.6780 28 6 6.9152 -12.9905 2.2180 29 6 1.8267 -3.6628 -0.1630 30 1 -0.4850 0.8400 -0.0004 31 1 0.0919 -1.3467 1.6803 32 1 -0.6909 -2.6079 0.6940 33 1 1.2630 -3.0248 3.0041 34 1 -0.4626 -3.4641 2.9673 35 1 1.4494 -6.3628 -0.1174 36 1 3.1963 -6.0257 -0.0676 37 1 2.3280 -6.6121 2.5553 38 1 3.6482 -8.8609 3.2342 39 1 1.9012 -9.1983 3.1829 40 1 2.4361 -11.0456 1.3863 41 1 4.8371 -10.7666 3.2217 42 1 4.3797 -13.3291 2.8313 43 1 3.7194 -12.8828 1.2397 44 1 5.1820 -12.1485 -0.5506 45 1 7.4483 -12.2191 -1.5107 46 1 9.3724 -12.7905 -0.0843 47 1 9.0308 -13.2854 2.3035 48 1 6.7653 -13.2078 3.2651 49 1 1.0887 -4.0602 -0.8598 50 1 2.7840 -3.5429 -0.6704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698785132.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:24 Heat of formation + Delta-G solvation = -27.130062 kcal Electronic energy + Delta-G solvation = -28430.340800 eV Core-core repulsion = 24423.054962 eV Total energy + Delta-G solvation = -4007.285838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.77870 -39.50254 -38.45676 -35.90277 -34.85948 -34.27065 -32.70409 -31.57040 -31.13747 -30.74409 -29.17452 -27.49859 -25.95700 -24.75450 -23.19487 -22.83380 -21.93773 -21.47965 -20.54828 -19.78865 -19.54132 -17.22653 -17.03369 -16.78771 -16.17384 -16.00130 -15.49092 -15.42887 -15.21169 -15.00353 -14.59805 -14.37961 -13.97282 -13.86398 -13.67677 -13.61313 -13.45653 -13.24531 -13.09332 -12.88503 -12.72796 -12.44947 -12.16043 -11.90172 -11.58262 -11.51024 -11.31893 -11.19510 -11.15763 -10.87648 -10.73636 -10.43862 -10.31728 -10.02597 -9.94998 -9.68314 -9.26358 -9.17256 -9.10295 -8.95143 -8.92585 -8.57207 -6.78346 -5.87883 -3.31589 1.07417 1.14859 1.97887 2.69876 3.30957 3.32717 3.39204 3.41295 3.53196 4.21045 4.40421 4.47469 4.59101 4.60618 4.75536 4.77653 4.87584 4.97344 5.06951 5.12899 5.19891 5.25671 5.29953 5.30345 5.41704 5.46349 5.47679 5.51883 5.58015 5.77008 5.78149 5.79498 5.85136 6.01526 6.12757 6.19712 6.26446 6.26681 6.33536 6.34065 6.43223 6.45653 6.53925 6.56942 6.72705 6.75916 7.06335 7.47461 7.58645 7.67936 7.81551 8.28741 8.30353 9.07862 9.70655 10.27702 11.20268 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.001638 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.453987 B =17089.358721 C =18035.696022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.130 3.870 16 N -0.721 5.721 17 C 0.512 3.488 18 O -0.543 6.543 19 C -0.113 4.113 20 C -0.126 4.126 21 C -0.155 4.155 22 C -0.050 4.050 23 C -0.076 4.076 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.127 4.127 27 C -0.121 4.121 28 C -0.119 4.119 29 C 0.121 3.879 30 H 0.255 0.745 31 H 0.093 0.907 32 H 0.028 0.972 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.403 0.597 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.030 0.970 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.333 -25.047 8.064 28.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.317 5.317 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.076 0.924 15 C 0.006 3.994 16 N -0.372 5.372 17 C 0.298 3.702 18 O -0.421 6.421 19 C -0.153 4.153 20 C -0.144 4.144 21 C -0.173 4.173 22 C -0.087 4.087 23 C -0.076 4.076 24 C -0.129 4.129 25 C -0.136 4.136 26 C -0.145 4.145 27 C -0.139 4.139 28 C -0.137 4.137 29 C -0.006 4.006 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.238 0.762 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.048 0.952 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.187 -25.321 7.246 28.239 hybrid contribution 0.473 1.517 0.355 1.628 sum 10.660 -23.804 7.601 27.167 Atomic orbital electron populations 1.70039 1.05294 1.25685 1.53589 1.25057 0.95341 0.98520 1.00701 0.86251 0.79154 0.83447 0.77739 1.21323 1.21459 1.20381 1.19186 0.92700 0.84509 1.42161 0.91374 1.44080 1.34398 1.01053 1.52215 1.21433 0.89269 0.98271 0.89659 1.23320 0.99041 0.84868 0.96547 1.87774 1.41873 1.32564 1.68726 1.22893 0.87589 0.93889 0.95123 0.92356 1.21415 1.01950 0.87386 0.88608 1.45964 1.72305 1.08244 1.10736 1.20527 0.76368 0.82548 0.90713 1.90699 1.50359 1.76787 1.24227 1.20760 1.04456 0.93005 0.97041 1.22421 0.98449 0.94188 0.99369 1.22640 0.97455 0.96242 1.00973 1.19675 0.93460 0.95261 1.00324 1.19808 0.95118 0.98885 0.93806 1.21132 0.97470 0.99379 0.94922 1.21188 0.92779 0.99632 0.99993 1.21155 0.98867 1.00269 0.94180 1.21129 0.97030 1.00343 0.95428 1.21047 0.92418 1.00694 0.99562 1.21532 0.98964 0.87226 0.92862 0.93485 0.88872 0.95354 0.94095 0.90039 0.90804 0.90308 0.76231 0.88641 0.87883 0.86600 0.87308 0.90160 0.90418 0.85893 0.86063 0.86258 0.86219 0.86164 0.95203 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 11.18 55.49 0.62 -25.15 16 2 C 0.00 0.07 4.93 -17.43 -0.09 -0.01 16 3 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.26 -6.91 9.64 -15.06 -0.15 -7.06 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 9 N -0.59 -14.70 3.04 -171.58 -0.52 -15.22 16 10 C 0.14 3.27 5.44 -3.53 -0.02 3.25 16 11 C 0.04 0.75 6.98 37.31 0.26 1.01 16 12 O -0.39 -7.10 10.13 -35.23 -0.36 -7.46 16 13 C 0.07 1.11 2.88 -26.36 -0.08 1.04 16 14 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 15 C 0.13 1.96 5.37 -4.05 -0.02 1.93 16 16 N -0.72 -9.21 5.45 -60.29 -0.33 -9.54 16 17 C 0.51 6.69 7.82 -10.99 -0.09 6.61 16 18 O -0.54 -9.21 16.03 5.55 0.09 -9.12 16 19 C -0.11 -1.01 6.14 -29.03 -0.18 -1.19 16 20 C -0.13 -1.19 8.36 -36.03 -0.30 -1.49 16 21 C -0.16 -1.30 9.10 -36.03 -0.33 -1.63 16 22 C -0.05 -0.38 5.79 -29.03 -0.17 -0.55 16 23 C -0.08 -0.67 5.12 -104.62 -0.54 -1.21 16 24 C -0.11 -1.06 9.70 -39.58 -0.38 -1.44 16 25 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 26 C -0.13 -1.03 10.05 -39.59 -0.40 -1.43 16 27 C -0.12 -0.95 10.05 -39.59 -0.40 -1.34 16 28 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 29 C 0.12 2.51 6.05 -3.32 -0.02 2.49 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.40 4.39 8.35 -40.82 -0.34 4.05 16 38 H 0.10 0.69 7.79 -51.93 -0.40 0.28 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.12 1.17 7.84 -52.49 -0.41 0.76 16 41 H 0.11 0.85 7.84 -52.49 -0.41 0.44 16 42 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 43 H 0.08 0.58 7.74 -51.92 -0.40 0.18 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 48 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 49 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 LS Contribution 413.33 15.07 6.23 6.23 Total: -1.00 -32.51 413.33 -11.13 -43.64 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.17 Total: 4.20 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -3.67 Total: -3.81 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.23 Total: -49.91 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.27 Total: -16.58 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.51 -11.13 -43.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698785132.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.512 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds