Wall clock time and date at job start Wed Apr 1 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00148 * 2 1 4 4 H 1.48510 * 109.46948 * 274.18874 * 3 2 1 5 5 H 1.48502 * 109.47132 * 34.18555 * 3 2 1 6 6 H 1.48497 * 109.47557 * 154.18838 * 3 2 1 7 7 C 1.38810 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00496 * 162.97754 * 7 2 1 9 9 N 1.36945 * 120.00018 * 342.70023 * 7 2 1 10 10 C 1.47152 * 120.97943 * 333.56334 * 9 7 2 11 11 C 1.53295 * 108.38140 * 230.51029 * 10 9 7 12 12 O 1.42963 * 109.22206 * 307.69611 * 11 10 9 13 13 C 1.42968 * 114.16391 * 62.58365 * 12 11 10 14 14 H 1.08998 * 109.51246 * 57.39180 * 13 12 11 15 15 C 1.52996 * 109.50892 * 177.49101 * 13 12 11 16 16 N 1.46495 * 109.47697 * 300.00134 * 15 13 12 17 17 C 1.34772 * 120.00473 * 180.02562 * 16 15 13 18 18 O 1.21285 * 120.00103 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00259 * 180.02562 * 17 16 15 20 20 C 1.50701 * 109.47037 * 179.97438 * 19 17 16 21 21 C 1.31003 * 119.99688 * 124.99911 * 20 19 17 22 22 C 1.50700 * 119.99689 * 179.97438 * 21 20 19 23 23 C 1.50704 * 109.47287 * 124.99701 * 22 21 20 24 24 C 1.38227 * 120.00090 * 269.73443 * 23 22 21 25 25 C 1.38245 * 119.99645 * 179.80699 * 24 23 22 26 26 C 1.38235 * 119.99801 * 0.39709 * 25 24 23 27 27 C 1.38228 * 119.99968 * 359.84888 * 26 25 24 28 28 C 1.38235 * 120.00652 * 359.96503 * 27 26 25 29 29 C 1.47144 * 120.98162 * 153.27732 * 9 7 2 30 30 H 0.96999 * 119.99938 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.68268 * 350.23483 * 10 9 7 32 32 H 1.08997 * 109.68041 * 110.75074 * 10 9 7 33 33 H 1.09001 * 109.51251 * 67.62218 * 11 10 9 34 34 H 1.09004 * 109.50888 * 187.77800 * 11 10 9 35 35 H 1.09009 * 109.47344 * 60.00084 * 15 13 12 36 36 H 1.09006 * 109.46978 * 179.97438 * 15 13 12 37 37 H 0.97006 * 119.99657 * 359.97438 * 16 15 13 38 38 H 1.09005 * 109.47036 * 299.99596 * 19 17 16 39 39 H 1.08997 * 109.47284 * 59.99470 * 19 17 16 40 40 H 1.07997 * 120.00010 * 304.99836 * 20 19 17 41 41 H 1.07997 * 120.00302 * 359.97438 * 21 20 19 42 42 H 1.08995 * 109.47370 * 245.00201 * 22 21 20 43 43 H 1.09008 * 109.47385 * 5.00462 * 22 21 20 44 44 H 1.07997 * 120.00739 * 359.97438 * 24 23 22 45 45 H 1.07997 * 119.99427 * 180.22278 * 25 24 23 46 46 H 1.08000 * 119.99440 * 179.83486 * 26 25 24 47 47 H 1.08001 * 119.99808 * 179.97438 * 27 26 25 48 48 H 1.07993 * 120.00457 * 179.97438 * 28 27 26 49 49 H 1.09001 * 109.68529 * 249.21646 * 29 9 7 50 50 H 1.09006 * 109.68416 * 9.76697 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4092 2.0975 -1.3964 5 1 1.4947 2.6255 0.7867 6 1 3.5892 1.4162 0.6096 7 6 2.0103 -1.2021 -0.0005 8 1 3.0548 -1.2226 -0.2743 9 7 1.3720 -2.3614 0.3516 10 6 0.2074 -2.3419 1.2509 11 6 0.4435 -3.3628 2.3698 12 8 0.7775 -4.6266 1.7911 13 6 1.9871 -4.6199 1.0290 14 1 2.8123 -4.2874 1.6587 15 6 2.2742 -6.0316 0.5137 16 7 2.4180 -6.9461 1.6491 17 6 2.6765 -8.2513 1.4346 18 8 2.7896 -8.6690 0.3015 19 6 2.8238 -9.1922 2.6026 20 6 3.1067 -10.5826 2.0949 21 6 4.1662 -11.2297 2.5133 22 6 4.4488 -12.6204 2.0061 23 6 5.8352 -12.6683 1.4174 24 6 6.0262 -12.3956 0.0758 25 6 7.2986 -12.4357 -0.4633 26 6 8.3787 -12.7566 0.3375 27 6 8.1869 -13.0343 1.6780 28 6 6.9152 -12.9905 2.2180 29 6 1.8267 -3.6628 -0.1630 30 1 -0.4850 0.8400 -0.0004 31 1 0.0919 -1.3467 1.6803 32 1 -0.6909 -2.6079 0.6940 33 1 1.2630 -3.0248 3.0041 34 1 -0.4626 -3.4641 2.9673 35 1 1.4494 -6.3628 -0.1174 36 1 3.1963 -6.0257 -0.0676 37 1 2.3280 -6.6121 2.5553 38 1 3.6482 -8.8609 3.2342 39 1 1.9012 -9.1983 3.1829 40 1 2.4361 -11.0456 1.3863 41 1 4.8371 -10.7666 3.2217 42 1 4.3797 -13.3291 2.8313 43 1 3.7194 -12.8828 1.2397 44 1 5.1820 -12.1485 -0.5506 45 1 7.4483 -12.2191 -1.5107 46 1 9.3724 -12.7905 -0.0843 47 1 9.0308 -13.2854 2.3035 48 1 6.7653 -13.2078 3.2651 49 1 1.0887 -4.0602 -0.8598 50 1 2.7840 -3.5429 -0.6704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698785132.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:23 Heat of formation + Delta-G solvation = -45.836913 kcal Electronic energy + Delta-G solvation = -28431.151990 eV Core-core repulsion = 24423.054962 eV Total energy + Delta-G solvation = -4008.097028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.87528 -40.16396 -39.92824 -36.69046 -36.39325 -35.69185 -33.50995 -33.26127 -32.30219 -31.74157 -30.04597 -29.07671 -27.27082 -25.83122 -24.93053 -23.44277 -23.38058 -22.22884 -21.72940 -21.10633 -20.39290 -18.91029 -18.05468 -17.65734 -17.53109 -17.17260 -16.82722 -16.37061 -16.15630 -16.03687 -16.00343 -15.56227 -15.48717 -15.03879 -14.81958 -14.64454 -14.58925 -14.31909 -14.24044 -14.06145 -13.75415 -13.40209 -13.22198 -13.02432 -12.77738 -12.71809 -12.67879 -12.51242 -12.20488 -12.16667 -12.08574 -11.92381 -11.88456 -11.78554 -11.35335 -10.98917 -10.81021 -10.55151 -10.09960 -9.91800 -9.79847 -9.56391 -8.76471 -7.92975 -5.40545 0.45173 0.52051 1.29228 1.45569 1.46973 1.57216 1.69336 2.28610 2.48660 2.78043 2.90750 3.22261 3.48584 3.82858 3.88423 3.98456 4.00690 4.02931 4.07512 4.19405 4.22829 4.29552 4.32873 4.45567 4.48566 4.51085 4.57923 4.63953 4.66930 4.70118 4.70949 4.76137 4.82039 4.88611 4.90082 4.98395 5.05354 5.18608 5.19902 5.22810 5.42560 5.54250 5.59361 5.59865 5.65180 5.70373 5.76657 5.92080 6.16117 6.24314 6.31833 6.60526 7.04641 7.29505 7.72597 8.26427 9.13040 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.001638 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.453987 B =17089.358721 C =18035.696022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.268 4.268 8 H 0.072 0.928 9 N -0.612 5.612 10 C 0.142 3.858 11 C 0.055 3.945 12 O -0.388 6.388 13 C 0.081 3.919 14 H 0.070 0.930 15 C 0.141 3.859 16 N -0.714 5.714 17 C 0.509 3.491 18 O -0.588 6.588 19 C -0.102 4.102 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.050 4.050 23 C -0.086 4.086 24 C -0.134 4.134 25 C -0.133 4.133 26 C -0.136 4.136 27 C -0.126 4.126 28 C -0.125 4.125 29 C 0.115 3.885 30 H 0.252 0.748 31 H 0.067 0.933 32 H -0.002 1.002 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.416 0.584 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.114 0.886 45 H 0.129 0.871 46 H 0.137 0.863 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.016 0.984 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.194 -26.104 10.427 30.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.397 4.397 8 H 0.090 0.910 9 N -0.337 5.337 10 C 0.017 3.983 11 C -0.023 4.023 12 O -0.307 6.307 13 C 0.021 3.979 14 H 0.088 0.912 15 C 0.016 3.984 16 N -0.366 5.366 17 C 0.298 3.702 18 O -0.468 6.468 19 C -0.141 4.141 20 C -0.164 4.164 21 C -0.162 4.162 22 C -0.087 4.087 23 C -0.086 4.086 24 C -0.152 4.152 25 C -0.151 4.151 26 C -0.154 4.154 27 C -0.144 4.144 28 C -0.142 4.142 29 C -0.011 4.011 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.016 0.984 33 H 0.071 0.929 34 H 0.128 0.872 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.252 0.748 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.119 0.881 41 H 0.139 0.861 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.146 0.854 46 H 0.155 0.845 47 H 0.160 0.840 48 H 0.159 0.841 49 H 0.034 0.966 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.060 -26.404 9.640 30.587 hybrid contribution -0.083 1.775 -0.450 1.833 sum 11.977 -24.629 9.190 28.887 Atomic orbital electron populations 1.70195 1.06754 1.26106 1.55053 1.25844 0.96097 1.01674 1.00941 0.85210 0.78238 0.79255 0.77402 1.21428 1.21635 1.19162 1.19543 0.93078 0.85614 1.41501 0.91037 1.44361 1.34504 1.01882 1.52931 1.21321 0.87979 0.98463 0.90582 1.23158 1.00860 0.83514 0.94747 1.87791 1.42372 1.31981 1.68599 1.22708 0.87562 0.94131 0.93468 0.91165 1.21142 1.01533 0.86563 0.89196 1.45867 1.72020 1.08045 1.10639 1.21293 0.74967 0.82677 0.91298 1.90686 1.52308 1.77465 1.26380 1.20777 1.06600 0.91301 0.95456 1.22412 0.99104 0.94829 1.00102 1.22785 0.96704 0.96355 1.00318 1.19713 0.92765 0.95449 1.00801 1.19976 0.95978 0.99045 0.93633 1.21251 0.97662 1.00673 0.95652 1.21400 0.92947 1.00018 1.00732 1.21448 0.99449 0.99915 0.94554 1.21480 0.97804 0.99558 0.95575 1.21342 0.92222 1.00135 1.00539 1.21695 0.98650 0.86408 0.94350 0.93903 0.91489 0.98419 0.92919 0.87193 0.92426 0.89876 0.74760 0.86137 0.85565 0.88084 0.86117 0.88217 0.90972 0.86776 0.85352 0.84495 0.83984 0.84076 0.96640 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.73 11.18 21.65 0.24 -54.49 16 2 C -0.05 -2.75 4.93 84.86 0.42 -2.33 16 3 Si 0.97 43.94 29.59 68.60 2.03 45.97 16 4 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.27 -14.50 9.64 84.03 0.81 -13.69 16 8 H 0.07 3.74 7.89 -2.91 -0.02 3.72 16 9 N -0.61 -30.57 3.04 -696.75 -2.12 -32.69 16 10 C 0.14 6.77 5.44 86.35 0.47 7.24 16 11 C 0.05 1.96 6.98 72.08 0.50 2.46 16 12 O -0.39 -13.41 10.13 -148.98 -1.51 -14.92 16 13 C 0.08 2.66 2.88 30.83 0.09 2.75 16 14 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 15 C 0.14 4.07 5.37 86.38 0.46 4.53 16 16 N -0.71 -16.79 5.45 -463.06 -2.52 -19.31 16 17 C 0.51 12.56 7.82 87.66 0.69 13.25 16 18 O -0.59 -19.89 16.03 -3.04 -0.05 -19.94 16 19 C -0.10 -1.57 6.14 29.10 0.18 -1.39 16 20 C -0.15 -2.57 8.36 25.64 0.21 -2.35 16 21 C -0.14 -2.15 9.10 25.64 0.23 -1.92 16 22 C -0.05 -0.70 5.79 29.10 0.17 -0.54 16 23 C -0.09 -1.45 5.12 -19.87 -0.10 -1.55 16 24 C -0.13 -2.60 9.70 22.27 0.22 -2.38 16 25 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 26 C -0.14 -2.04 10.05 22.27 0.22 -1.81 16 27 C -0.13 -1.72 10.05 22.27 0.22 -1.49 16 28 C -0.12 -1.75 9.70 22.27 0.22 -1.54 16 29 C 0.12 4.78 6.05 86.50 0.52 5.30 16 30 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.07 3.53 6.17 -2.39 -0.01 3.51 16 32 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 35 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.42 7.77 8.35 -92.70 -0.77 6.99 16 38 H 0.12 1.28 7.79 -2.38 -0.02 1.26 16 39 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.10 2.05 7.84 -2.91 -0.02 2.03 16 41 H 0.12 1.52 7.84 -2.91 -0.02 1.50 16 42 H 0.10 0.99 8.09 -2.39 -0.02 0.97 16 43 H 0.07 1.07 7.74 -2.38 -0.02 1.05 16 44 H 0.11 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 46 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 47 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 48 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 49 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.07 2.78 7.96 -2.38 -0.02 2.76 16 Total: -1.00 -71.69 413.33 1.98 -69.72 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.14 Total: 23.25 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 5.76 Total: 2.41 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -4.40 Total: -106.49 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -1.56 Total: -34.87 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.69 1.98 -69.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698785132.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.881 kcal (2) G-P(sol) polarization free energy of solvation -71.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds