Wall clock time and date at job start Wed Apr 1 2020 03:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99876 * 2 1 4 4 H 1.48505 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47292 * 299.99613 * 3 2 1 6 6 H 1.48505 * 109.47416 * 59.99918 * 3 2 1 7 7 C 1.38818 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99800 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99640 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99979 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47279 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.46791 * 294.99673 * 11 10 9 13 13 N 1.46493 * 109.47230 * 54.99927 * 11 10 9 14 14 C 1.34780 * 120.00134 * 205.00537 * 13 11 10 15 15 O 1.21278 * 119.99543 * 359.97438 * 14 13 11 16 16 C 1.50702 * 120.00381 * 180.02562 * 14 13 11 17 17 C 1.50694 * 109.82182 * 84.42528 * 16 14 13 18 18 C 1.38240 * 119.99986 * 90.43337 * 17 16 14 19 19 C 1.38236 * 120.00077 * 179.78078 * 18 17 16 20 20 C 1.38236 * 119.99948 * 0.44437 * 19 18 17 21 21 C 1.38242 * 119.99736 * 359.80564 * 20 19 18 22 22 C 1.38229 * 120.00172 * 359.97438 * 21 20 19 23 23 C 1.54380 * 109.82893 * 205.41027 * 16 14 13 24 24 C 1.55298 * 102.25613 * 98.15343 * 23 16 14 25 25 C 1.54955 * 100.94168 * 34.12957 * 24 23 16 26 26 O 1.43242 * 109.82483 * 323.54110 * 16 14 13 27 27 C 1.52996 * 109.47138 * 175.00148 * 11 10 9 28 28 C 1.53000 * 117.49997 * 179.97438 * 27 11 10 29 29 C 1.53002 * 60.02940 * 252.49592 * 28 27 11 30 30 H 0.97000 * 120.00437 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99845 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47053 * 59.99631 * 10 9 7 33 33 H 1.09005 * 109.47106 * 300.00145 * 10 9 7 34 34 H 0.97001 * 120.00313 * 24.99457 * 13 11 10 35 35 H 1.07998 * 119.99608 * 359.97438 * 18 17 16 36 36 H 1.07992 * 120.00234 * 180.27237 * 19 18 17 37 37 H 1.07995 * 120.00032 * 179.83307 * 20 19 18 38 38 H 1.08005 * 119.99748 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.99997 * 179.97438 * 22 21 20 40 40 H 1.09001 * 110.84508 * 216.34157 * 23 16 14 41 41 H 1.09005 * 110.84865 * 339.96111 * 23 16 14 42 42 H 1.09006 * 111.12426 * 276.21583 * 24 23 16 43 43 H 1.08998 * 111.16242 * 152.06392 * 24 23 16 44 44 H 1.09000 * 110.30794 * 204.63907 * 25 24 23 45 45 H 1.08996 * 110.39024 * 82.51325 * 25 24 23 46 46 H 1.09007 * 115.55004 * 325.66667 * 27 11 10 47 47 H 1.09002 * 117.49833 * 359.97438 * 28 27 11 48 48 H 1.09002 * 117.49953 * 144.99738 * 28 27 11 49 49 H 1.09000 * 117.49996 * 107.50493 * 29 28 27 50 50 H 1.08999 * 117.49664 * 252.51862 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.4974 -4.8138 0.9311 13 7 0.1449 -4.6758 -1.1318 14 6 -1.0797 -5.2366 -1.0810 15 8 -1.4205 -5.8607 -0.0986 16 6 -2.0250 -5.0892 -2.2454 17 6 -1.7331 -6.1474 -3.2777 18 6 -2.3817 -7.3669 -3.2200 19 6 -2.1173 -8.3360 -4.1696 20 6 -1.1976 -8.0892 -5.1716 21 6 -0.5452 -6.8716 -5.2263 22 6 -0.8129 -5.9008 -4.2794 23 6 -3.4832 -5.2201 -1.7559 24 6 -3.9200 -3.7360 -1.6202 25 6 -3.1335 -3.0899 -2.7885 26 8 -1.8790 -3.7887 -2.8279 27 6 1.8248 -6.1411 -0.1258 28 6 1.0021 -7.4310 -0.1444 29 6 1.8319 -7.0714 1.0897 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6848 -3.7145 0.8904 33 1 2.6848 -3.7145 -0.8895 34 1 0.4175 -4.1768 -1.9177 35 1 -3.0973 -7.5612 -2.4348 36 1 -2.6273 -9.2870 -4.1271 37 1 -0.9891 -8.8473 -5.9119 38 1 0.1738 -6.6789 -6.0090 39 1 -0.3029 -4.9498 -4.3219 40 1 -4.0951 -5.7386 -2.4942 41 1 -3.5247 -5.7265 -0.7915 42 1 -3.6097 -3.3214 -0.6610 43 1 -4.9951 -3.6276 -1.7630 44 1 -2.9702 -2.0299 -2.5942 45 1 -3.6705 -3.2234 -3.7276 46 1 2.7246 -6.1089 -0.7402 47 1 -0.0811 -7.3382 -0.0667 48 1 1.3605 -8.2475 -0.7714 49 1 1.2945 -6.7421 1.9791 50 1 2.7363 -7.6510 1.2745 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699597792.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:55 Heat of formation + Delta-G solvation = -13.042614 kcal Electronic energy + Delta-G solvation = -31866.835199 eV Core-core repulsion = 27860.160238 eV Total energy + Delta-G solvation = -4006.674961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.92342 -39.03794 -38.31074 -36.91665 -34.96378 -33.39590 -32.52352 -31.95365 -30.93343 -30.81983 -28.51096 -27.65329 -24.22223 -23.69256 -22.93060 -22.27991 -21.90095 -21.42895 -21.29627 -20.01701 -19.66561 -17.88226 -17.28465 -17.00197 -16.19218 -15.83243 -15.62737 -15.10560 -14.93631 -14.78965 -14.60459 -14.29372 -14.02905 -13.63951 -13.54724 -13.37075 -13.10892 -12.98676 -12.81922 -12.66782 -12.15803 -11.98157 -11.81015 -11.62860 -11.32083 -11.23707 -11.09845 -11.02605 -10.89430 -10.86996 -10.82970 -10.80104 -10.27522 -10.13191 -10.00357 -9.87058 -9.64844 -9.28587 -8.96448 -8.89673 -8.70285 -8.53969 -6.91928 -5.74835 -3.03994 1.20872 1.35515 2.86149 3.38961 3.43892 3.49620 3.51494 3.65199 3.75947 4.18311 4.48263 4.58271 4.58790 4.86315 4.90803 4.93991 4.97202 5.04600 5.13338 5.18974 5.22436 5.33737 5.36486 5.44334 5.51308 5.54340 5.58763 5.66533 5.76699 5.83189 5.87226 5.88580 5.89129 5.95954 5.98398 6.04508 6.13537 6.19819 6.28415 6.38416 6.40513 6.44748 6.48299 6.54430 6.56630 6.72337 6.91053 6.92599 7.04576 7.71430 7.95528 8.42641 8.56309 9.54921 10.11145 10.47161 11.47383 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.004011 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.267045 B = 6979.794416 C = 8136.344739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.148 3.852 11 C 0.167 3.833 12 H 0.087 0.913 13 N -0.688 5.688 14 C 0.530 3.470 15 O -0.543 6.543 16 C 0.134 3.866 17 C -0.088 4.088 18 C -0.103 4.103 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.088 4.088 23 C -0.138 4.138 24 C -0.156 4.156 25 C 0.053 3.947 26 O -0.354 6.354 27 C -0.162 4.162 28 C -0.183 4.183 29 C -0.171 4.171 30 H 0.253 0.747 31 H 0.387 0.613 32 H 0.035 0.965 33 H 0.024 0.976 34 H 0.409 0.591 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.059 0.941 46 H 0.102 0.898 47 H 0.116 0.884 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.138 -16.647 -8.882 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.020 3.980 11 C 0.062 3.938 12 H 0.105 0.895 13 N -0.337 5.337 14 C 0.314 3.686 15 O -0.423 6.423 16 C 0.091 3.909 17 C -0.088 4.088 18 C -0.121 4.121 19 C -0.143 4.143 20 C -0.136 4.136 21 C -0.141 4.141 22 C -0.106 4.106 23 C -0.176 4.176 24 C -0.193 4.193 25 C -0.023 4.023 26 O -0.273 6.273 27 C -0.182 4.182 28 C -0.220 4.220 29 C -0.209 4.209 30 H 0.063 0.937 31 H 0.221 0.779 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.244 0.756 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.148 0.852 40 H 0.102 0.898 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.120 0.880 47 H 0.134 0.866 48 H 0.100 0.900 49 H 0.112 0.888 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.022 -16.848 -8.263 19.708 hybrid contribution 0.237 1.172 -0.373 1.252 sum -5.785 -15.677 -8.636 18.809 Atomic orbital electron populations 1.69682 1.05035 1.25354 1.57605 1.24718 0.95487 0.97556 1.02942 0.86146 0.78817 0.84256 0.77122 1.20601 1.21917 1.21949 1.19249 0.91019 0.84065 1.42794 0.91165 1.42337 1.06040 0.99636 1.89472 1.20906 0.93011 0.85175 0.98877 1.20828 0.90237 0.92791 0.89941 0.89531 1.45852 1.13993 1.53109 1.20706 1.20191 0.82456 0.78629 0.87281 1.90583 1.76334 1.42464 1.32897 1.20894 0.95707 0.84365 0.89919 1.19752 0.98228 0.94547 0.96312 1.21042 0.99529 0.92788 0.98781 1.21072 0.98807 0.99075 0.95298 1.21170 0.96801 0.97156 0.98512 1.21156 1.00082 0.93694 0.99175 1.21063 0.96399 0.99451 0.93693 1.23198 0.92309 0.98229 1.03827 1.23293 1.01065 0.94577 1.00402 1.23456 0.83904 0.97718 0.97248 1.88484 1.32520 1.25308 1.80974 1.22653 1.01473 0.91460 1.02593 1.23222 1.00641 0.97472 1.00623 1.22892 1.02030 1.03213 0.92770 0.93683 0.77901 0.94755 0.95823 0.75556 0.85678 0.86061 0.86252 0.85962 0.85207 0.89784 0.87850 0.89613 0.89701 0.88539 0.92234 0.87954 0.86559 0.90033 0.88798 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.36 5.43 -59.91 -0.33 -18.68 16 10 C 0.15 2.99 5.80 -4.04 -0.02 2.97 16 11 C 0.17 2.95 2.43 -67.94 -0.17 2.79 16 12 H 0.09 1.72 7.34 -51.93 -0.38 1.34 16 13 N -0.69 -11.92 4.41 -53.81 -0.24 -12.16 16 14 C 0.53 9.01 6.07 -10.98 -0.07 8.94 16 15 O -0.54 -10.12 12.59 5.56 0.07 -10.05 16 16 C 0.13 1.96 0.98 -92.20 -0.09 1.87 16 17 C -0.09 -1.16 4.80 -104.62 -0.50 -1.66 16 18 C -0.10 -1.21 8.75 -39.58 -0.35 -1.56 16 19 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 20 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 21 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 22 C -0.09 -1.12 9.36 -39.59 -0.37 -1.49 16 23 C -0.14 -1.75 4.99 -24.79 -0.12 -1.87 16 24 C -0.16 -1.95 7.16 -24.48 -0.18 -2.13 16 25 C 0.05 0.72 7.78 38.19 0.30 1.01 16 26 O -0.35 -5.58 9.11 -35.23 -0.32 -5.90 16 27 C -0.16 -2.44 5.36 -90.59 -0.49 -2.92 16 28 C -0.18 -2.66 9.73 -26.73 -0.26 -2.92 16 29 C -0.17 -2.36 10.18 -26.69 -0.27 -2.63 16 30 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.39 10.40 7.33 -40.82 -0.30 10.10 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.41 7.24 8.10 -40.82 -0.33 6.91 16 35 H 0.13 1.34 6.85 -52.49 -0.36 0.98 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 39 H 0.13 1.71 7.54 -52.49 -0.40 1.31 16 40 H 0.08 0.89 6.89 -51.93 -0.36 0.54 16 41 H 0.10 1.40 6.76 -51.93 -0.35 1.05 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 1.45 8.11 -51.93 -0.42 1.03 16 47 H 0.12 1.94 5.02 -51.93 -0.26 1.68 16 48 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.09 1.35 8.05 -51.93 -0.42 0.93 16 50 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 401.93 15.07 6.06 6.06 Total: -1.00 -31.31 401.93 -10.85 -42.16 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: -7.77 Total: 20.07 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -4.02 Total: -11.80 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.16 Total: -57.83 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.25 Total: -15.95 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.31 -10.85 -42.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699597792.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.120 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds