Wall clock time and date at job start Wed Apr 1 2020 03:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99876 * 2 1 4 4 H 1.48505 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47292 * 299.99613 * 3 2 1 6 6 H 1.48505 * 109.47416 * 59.99918 * 3 2 1 7 7 C 1.38818 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99800 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99640 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99979 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47279 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.46791 * 294.99673 * 11 10 9 13 13 N 1.46493 * 109.47230 * 54.99927 * 11 10 9 14 14 C 1.34780 * 120.00134 * 205.00537 * 13 11 10 15 15 O 1.21278 * 119.99543 * 359.97438 * 14 13 11 16 16 C 1.50702 * 120.00381 * 180.02562 * 14 13 11 17 17 C 1.50694 * 109.82182 * 84.42528 * 16 14 13 18 18 C 1.38240 * 119.99986 * 90.43337 * 17 16 14 19 19 C 1.38236 * 120.00077 * 179.78078 * 18 17 16 20 20 C 1.38236 * 119.99948 * 0.44437 * 19 18 17 21 21 C 1.38242 * 119.99736 * 359.80564 * 20 19 18 22 22 C 1.38229 * 120.00172 * 359.97438 * 21 20 19 23 23 C 1.54380 * 109.82893 * 205.41027 * 16 14 13 24 24 C 1.55298 * 102.25613 * 98.15343 * 23 16 14 25 25 C 1.54955 * 100.94168 * 34.12957 * 24 23 16 26 26 O 1.43242 * 109.82483 * 323.54110 * 16 14 13 27 27 C 1.52996 * 109.47138 * 175.00148 * 11 10 9 28 28 C 1.53000 * 117.49997 * 179.97438 * 27 11 10 29 29 C 1.53002 * 60.02940 * 252.49592 * 28 27 11 30 30 H 0.97000 * 120.00437 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99845 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47053 * 59.99631 * 10 9 7 33 33 H 1.09005 * 109.47106 * 300.00145 * 10 9 7 34 34 H 0.97001 * 120.00313 * 24.99457 * 13 11 10 35 35 H 1.07998 * 119.99608 * 359.97438 * 18 17 16 36 36 H 1.07992 * 120.00234 * 180.27237 * 19 18 17 37 37 H 1.07995 * 120.00032 * 179.83307 * 20 19 18 38 38 H 1.08005 * 119.99748 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.99997 * 179.97438 * 22 21 20 40 40 H 1.09001 * 110.84508 * 216.34157 * 23 16 14 41 41 H 1.09005 * 110.84865 * 339.96111 * 23 16 14 42 42 H 1.09006 * 111.12426 * 276.21583 * 24 23 16 43 43 H 1.08998 * 111.16242 * 152.06392 * 24 23 16 44 44 H 1.09000 * 110.30794 * 204.63907 * 25 24 23 45 45 H 1.08996 * 110.39024 * 82.51325 * 25 24 23 46 46 H 1.09007 * 115.55004 * 325.66667 * 27 11 10 47 47 H 1.09002 * 117.49833 * 359.97438 * 28 27 11 48 48 H 1.09002 * 117.49953 * 144.99738 * 28 27 11 49 49 H 1.09000 * 117.49996 * 107.50493 * 29 28 27 50 50 H 1.08999 * 117.49664 * 252.51862 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.4974 -4.8138 0.9311 13 7 0.1449 -4.6758 -1.1318 14 6 -1.0797 -5.2366 -1.0810 15 8 -1.4205 -5.8607 -0.0986 16 6 -2.0250 -5.0892 -2.2454 17 6 -1.7331 -6.1474 -3.2777 18 6 -2.3817 -7.3669 -3.2200 19 6 -2.1173 -8.3360 -4.1696 20 6 -1.1976 -8.0892 -5.1716 21 6 -0.5452 -6.8716 -5.2263 22 6 -0.8129 -5.9008 -4.2794 23 6 -3.4832 -5.2201 -1.7559 24 6 -3.9200 -3.7360 -1.6202 25 6 -3.1335 -3.0899 -2.7885 26 8 -1.8790 -3.7887 -2.8279 27 6 1.8248 -6.1411 -0.1258 28 6 1.0021 -7.4310 -0.1444 29 6 1.8319 -7.0714 1.0897 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6848 -3.7145 0.8904 33 1 2.6848 -3.7145 -0.8895 34 1 0.4175 -4.1768 -1.9177 35 1 -3.0973 -7.5612 -2.4348 36 1 -2.6273 -9.2870 -4.1271 37 1 -0.9891 -8.8473 -5.9119 38 1 0.1738 -6.6789 -6.0090 39 1 -0.3029 -4.9498 -4.3219 40 1 -4.0951 -5.7386 -2.4942 41 1 -3.5247 -5.7265 -0.7915 42 1 -3.6097 -3.3214 -0.6610 43 1 -4.9951 -3.6276 -1.7630 44 1 -2.9702 -2.0299 -2.5942 45 1 -3.6705 -3.2234 -3.7276 46 1 2.7246 -6.1089 -0.7402 47 1 -0.0811 -7.3382 -0.0667 48 1 1.3605 -8.2475 -0.7714 49 1 1.2945 -6.7421 1.9791 50 1 2.7363 -7.6510 1.2745 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699597792.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:54 Heat of formation + Delta-G solvation = -31.272807 kcal Electronic energy + Delta-G solvation = -31867.625719 eV Core-core repulsion = 27860.160238 eV Total energy + Delta-G solvation = -4007.465481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.08418 -40.23299 -39.29720 -38.25038 -36.62745 -35.02412 -33.55966 -33.25224 -32.61286 -31.67815 -29.92245 -28.95706 -26.02359 -24.93116 -23.87083 -23.47990 -23.08967 -22.90342 -22.28613 -21.34784 -20.88135 -19.37502 -18.78388 -18.26436 -17.50072 -16.85463 -16.76748 -16.71373 -16.26046 -15.95369 -15.82414 -15.65367 -15.16721 -15.11963 -14.82640 -14.71972 -14.43933 -14.29781 -14.12834 -13.70572 -13.59479 -13.20615 -13.01639 -12.83851 -12.78778 -12.71351 -12.51226 -12.37407 -12.26474 -12.14368 -12.04068 -11.89118 -11.85031 -11.77437 -11.49007 -11.21074 -11.05663 -10.98552 -10.43417 -9.94471 -9.80788 -9.66237 -9.01050 -7.92929 -5.22964 0.33568 0.50999 1.47571 1.48065 1.54898 1.58108 2.12345 2.55330 2.56556 2.85643 3.01936 3.40499 3.44330 3.55141 3.55691 3.75395 3.93158 4.01230 4.08442 4.09914 4.11674 4.16055 4.19075 4.26918 4.32107 4.37242 4.43896 4.59621 4.61617 4.68406 4.70168 4.76603 4.79824 4.83007 4.87185 4.95911 5.01895 5.03984 5.08328 5.12696 5.16672 5.26576 5.34639 5.49925 5.55090 5.56515 5.58378 5.62455 5.89232 6.09463 6.26666 6.56397 7.19381 7.34138 8.06166 8.31525 9.29958 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.004011 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.267045 B = 6979.794416 C = 8136.344739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.070 4.070 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.246 4.246 8 H 0.077 0.923 9 N -0.741 5.741 10 C 0.151 3.849 11 C 0.177 3.823 12 H 0.059 0.941 13 N -0.690 5.690 14 C 0.524 3.476 15 O -0.565 6.565 16 C 0.136 3.864 17 C -0.102 4.102 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.114 4.114 21 C -0.127 4.127 22 C -0.106 4.106 23 C -0.132 4.132 24 C -0.151 4.151 25 C 0.047 3.953 26 O -0.377 6.377 27 C -0.168 4.168 28 C -0.178 4.178 29 C -0.160 4.160 30 H 0.249 0.751 31 H 0.374 0.626 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.405 0.595 35 H 0.131 0.869 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.117 0.883 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.118 0.882 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.083 0.917 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 -18.647 -10.372 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.263 4.263 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.223 1.223 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.384 5.384 10 C 0.024 3.976 11 C 0.072 3.928 12 H 0.077 0.923 13 N -0.338 5.338 14 C 0.310 3.690 15 O -0.445 6.445 16 C 0.093 3.907 17 C -0.103 4.103 18 C -0.131 4.131 19 C -0.140 4.140 20 C -0.132 4.132 21 C -0.144 4.144 22 C -0.124 4.124 23 C -0.169 4.169 24 C -0.189 4.189 25 C -0.028 4.028 26 O -0.296 6.296 27 C -0.187 4.187 28 C -0.215 4.215 29 C -0.198 4.198 30 H 0.058 0.942 31 H 0.206 0.794 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.241 0.759 35 H 0.149 0.851 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.158 0.842 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.110 0.890 42 H 0.074 0.926 43 H 0.136 0.864 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.136 0.864 47 H 0.112 0.888 48 H 0.119 0.881 49 H 0.101 0.899 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.385 -18.875 -9.753 21.918 hybrid contribution 0.069 1.728 0.090 1.732 sum -5.315 -17.147 -9.663 20.387 Atomic orbital electron populations 1.69846 1.06555 1.25780 1.59192 1.25527 0.96327 1.00896 1.03512 0.85098 0.78295 0.79939 0.76528 1.19027 1.22030 1.22303 1.19644 0.91510 0.85110 1.41494 0.90469 1.42491 1.05615 1.00843 1.89470 1.21018 0.93353 0.84073 0.99190 1.20595 0.89641 0.93485 0.89058 0.92301 1.45870 1.14397 1.53229 1.20277 1.20739 0.82484 0.77942 0.87847 1.90563 1.76688 1.43365 1.33924 1.20901 0.95810 0.84438 0.89517 1.19680 0.99485 0.94800 0.96349 1.21201 0.99753 0.92578 0.99569 1.21424 0.98503 0.99616 0.94440 1.21547 0.95758 0.97193 0.98726 1.21410 1.00398 0.93673 0.98962 1.21065 0.96932 0.99655 0.94744 1.23204 0.91630 0.98222 1.03885 1.23267 1.02856 0.94281 0.98478 1.23577 0.83671 0.96689 0.98894 1.88452 1.33900 1.26231 1.81036 1.22553 1.01798 0.90126 1.04252 1.23143 0.99422 0.97452 1.01495 1.22982 1.02675 1.02285 0.91818 0.94163 0.79385 0.94414 0.94682 0.75941 0.85128 0.83324 0.83271 0.84205 0.86722 0.87153 0.89005 0.92591 0.86424 0.90355 0.89562 0.86448 0.88783 0.88120 0.89883 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.23 13.06 21.65 0.28 -58.95 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 3 Si 0.97 46.40 29.55 68.60 2.03 48.42 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 7 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.74 -38.32 5.43 -343.46 -1.87 -40.18 16 10 C 0.15 6.15 5.80 86.38 0.50 6.66 16 11 C 0.18 6.45 2.43 44.99 0.11 6.56 16 12 H 0.06 2.46 7.34 -2.39 -0.02 2.45 16 13 N -0.69 -24.97 4.41 -442.56 -1.95 -26.93 16 14 C 0.52 18.62 6.07 87.66 0.53 19.15 16 15 O -0.56 -22.01 12.59 -3.02 -0.04 -22.05 16 16 C 0.14 4.07 0.98 -11.82 -0.01 4.06 16 17 C -0.10 -2.68 4.80 -19.87 -0.10 -2.77 16 18 C -0.11 -2.48 8.75 22.27 0.19 -2.28 16 19 C -0.12 -2.13 10.05 22.27 0.22 -1.90 16 20 C -0.11 -1.90 10.05 22.27 0.22 -1.68 16 21 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 22 C -0.11 -2.67 9.36 22.27 0.21 -2.47 16 23 C -0.13 -3.35 4.99 31.85 0.16 -3.19 16 24 C -0.15 -3.87 7.16 32.05 0.23 -3.64 16 25 C 0.05 1.33 7.78 72.65 0.57 1.89 16 26 O -0.38 -12.43 9.11 -148.98 -1.36 -13.79 16 27 C -0.17 -4.93 5.36 -10.77 -0.06 -4.99 16 28 C -0.18 -5.01 9.73 30.60 0.30 -4.71 16 29 C -0.16 -4.20 10.18 30.62 0.31 -3.88 16 30 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.37 21.06 7.33 -92.71 -0.68 20.38 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.41 15.13 8.10 -92.71 -0.75 14.38 16 35 H 0.13 2.63 6.85 -2.91 -0.02 2.61 16 36 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 37 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.11 3.15 7.54 -2.91 -0.02 3.13 16 40 H 0.11 2.20 6.89 -2.39 -0.02 2.18 16 41 H 0.09 2.56 6.76 -2.38 -0.02 2.54 16 42 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.12 3.12 8.11 -2.38 -0.02 3.10 16 47 H 0.09 3.15 5.02 -2.39 -0.01 3.14 16 48 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.08 2.36 8.05 -2.39 -0.02 2.34 16 50 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -69.14 401.93 1.54 -67.60 By element: Atomic # 1 Polarization: 58.37 SS G_CDS: -0.47 Total: 57.90 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 4.92 Total: -12.02 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -3.54 Total: -126.06 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -1.39 Total: -35.84 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -69.14 1.54 -67.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699597792.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.325 kcal (2) G-P(sol) polarization free energy of solvation -69.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds