Wall clock time and date at job start Wed Apr 1 2020 03:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09002 * 109.47682 * 64.99618 * 11 10 9 13 13 N 1.46506 * 109.47012 * 304.99483 * 11 10 9 14 14 C 1.34782 * 119.99726 * 154.99585 * 13 11 10 15 15 O 1.21278 * 120.00302 * 0.02562 * 14 13 11 16 16 C 1.50704 * 119.99703 * 179.97438 * 14 13 11 17 17 C 1.50702 * 109.81768 * 84.11844 * 16 14 13 18 18 C 1.38238 * 119.99804 * 90.42932 * 17 16 14 19 19 C 1.38236 * 119.99681 * 179.78725 * 18 17 16 20 20 C 1.38234 * 120.00201 * 0.43486 * 19 18 17 21 21 C 1.38230 * 120.00070 * 359.82113 * 20 19 18 22 22 C 1.38237 * 120.00048 * 270.69754 * 17 16 14 23 23 C 1.54374 * 109.83049 * 205.00508 * 16 14 13 24 24 C 1.55306 * 102.25377 * 98.16141 * 23 16 14 25 25 C 1.54939 * 100.94165 * 34.13016 * 24 23 16 26 26 O 1.43237 * 109.83291 * 323.14367 * 16 14 13 27 27 C 1.53003 * 109.47530 * 184.99929 * 11 10 9 28 28 C 1.52997 * 117.50018 * 248.62456 * 27 11 10 29 29 C 1.52994 * 117.50312 * 179.97438 * 27 11 10 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 33 33 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 34 34 H 0.97000 * 120.00390 * 335.00529 * 13 11 10 35 35 H 1.07993 * 119.99962 * 359.97438 * 18 17 16 36 36 H 1.08006 * 120.00080 * 180.27633 * 19 18 17 37 37 H 1.07999 * 120.00381 * 179.83461 * 20 19 18 38 38 H 1.08000 * 120.00281 * 179.97438 * 21 20 19 39 39 H 1.07994 * 120.00236 * 359.97438 * 22 17 16 40 40 H 1.09000 * 110.84693 * 216.35315 * 23 16 14 41 41 H 1.09005 * 110.84819 * 339.76079 * 23 16 14 42 42 H 1.08998 * 111.12507 * 152.05074 * 24 23 16 43 43 H 1.09003 * 111.11986 * 276.21186 * 24 23 16 44 44 H 1.09010 * 110.30959 * 82.47026 * 25 24 23 45 45 H 1.08995 * 110.31278 * 204.63920 * 25 24 23 46 46 H 1.09005 * 115.54700 * 34.32403 * 27 11 10 47 47 H 1.09004 * 117.49778 * 359.97438 * 28 27 11 48 48 H 1.08999 * 117.50334 * 145.01706 * 28 27 11 49 49 H 1.09005 * 117.49844 * 214.97844 * 29 27 11 50 50 H 1.08997 * 117.49808 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.4977 -4.8183 -0.9189 13 7 0.1438 -4.6703 1.1431 14 6 -1.0808 -5.2313 1.0941 15 8 -1.4210 -5.8601 0.1145 16 6 -2.0268 -5.0782 2.2572 17 6 -2.7649 -3.7689 2.1465 18 6 -3.9705 -3.7100 1.4726 19 6 -4.6496 -2.5099 1.3749 20 6 -4.1188 -1.3671 1.9432 21 6 -2.9107 -1.4249 2.6124 22 6 -2.2336 -2.6259 2.7140 23 6 -3.0342 -6.2479 2.2704 24 6 -2.4071 -7.2112 3.3148 25 6 -1.7775 -6.2006 4.3062 26 8 -1.2953 -5.1230 3.4878 27 6 1.8243 -6.1406 0.1454 28 6 1.8319 -7.0761 -1.0652 29 6 1.0016 -7.4302 0.1708 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6849 -3.7190 -0.8822 33 1 2.6842 -3.7101 0.8977 34 1 0.4159 -4.1676 1.9268 35 1 -4.3831 -4.6020 1.0252 36 1 -5.5937 -2.4647 0.8523 37 1 -4.6481 -0.4289 1.8645 38 1 -2.4958 -0.5319 3.0561 39 1 -1.2899 -2.6711 3.2370 40 1 -4.0176 -5.9092 2.5963 41 1 -3.0938 -6.7195 1.2895 42 1 -3.1729 -7.8146 3.8022 43 1 -1.6438 -7.8418 2.8588 44 1 -2.5308 -5.8369 5.0051 45 1 -0.9520 -6.6644 4.8460 46 1 2.7237 -6.1054 0.7603 47 1 1.2945 -6.7508 -1.9560 48 1 2.7363 -7.6567 -1.2470 49 1 1.3601 -8.2436 0.8018 50 1 -0.0817 -7.3376 0.0934 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699597795.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:06 Heat of formation + Delta-G solvation = -12.149256 kcal Electronic energy + Delta-G solvation = -32092.133925 eV Core-core repulsion = 28085.497703 eV Total energy + Delta-G solvation = -4006.636222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.89297 -38.93898 -38.13227 -36.93618 -34.96602 -33.39343 -32.45504 -31.91822 -30.91652 -30.45001 -28.41703 -27.63900 -24.23139 -23.65814 -22.75329 -22.16910 -21.83555 -21.41183 -21.24507 -19.99915 -19.61299 -17.85416 -17.20682 -16.94953 -16.21956 -15.79930 -15.41982 -15.02886 -14.95671 -14.82409 -14.44693 -14.22494 -13.83714 -13.63361 -13.49395 -13.15123 -13.10700 -12.97513 -12.77192 -12.34259 -12.10210 -11.93636 -11.82420 -11.62837 -11.36577 -11.25493 -11.19694 -10.94731 -10.86426 -10.80405 -10.77104 -10.60843 -10.32759 -10.13415 -10.03816 -9.86983 -9.64703 -9.25298 -8.87764 -8.56372 -8.51179 -8.37672 -6.90691 -5.72338 -3.02438 1.59160 1.79425 2.88937 3.42255 3.44487 3.50053 3.51591 3.57427 4.10566 4.20226 4.40617 4.58711 4.63066 4.79466 4.92473 4.99025 5.09941 5.20808 5.23297 5.29343 5.32883 5.36394 5.48850 5.51164 5.56317 5.59177 5.60851 5.64084 5.82619 5.84659 5.86709 5.89733 5.93847 5.96169 6.02399 6.11590 6.26546 6.28136 6.36603 6.39885 6.53743 6.55492 6.67426 6.72993 6.76927 6.90194 6.96812 7.05011 7.32957 7.72666 7.96331 8.43757 8.57423 9.56105 10.12008 10.48148 11.48782 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008376 B = 0.005236 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.201133 B = 5346.412419 C = 7726.147541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.903 3.097 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.148 3.852 11 C 0.166 3.834 12 H 0.086 0.914 13 N -0.689 5.689 14 C 0.530 3.470 15 O -0.544 6.544 16 C 0.141 3.859 17 C -0.101 4.101 18 C -0.107 4.107 19 C -0.127 4.127 20 C -0.110 4.110 21 C -0.101 4.101 22 C -0.073 4.073 23 C -0.138 4.138 24 C -0.156 4.156 25 C 0.051 3.949 26 O -0.360 6.360 27 C -0.161 4.161 28 C -0.172 4.172 29 C -0.184 4.184 30 H 0.253 0.747 31 H 0.387 0.613 32 H 0.034 0.966 33 H 0.024 0.976 34 H 0.408 0.592 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.071 -14.266 8.071 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.734 3.266 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.020 3.980 11 C 0.062 3.938 12 H 0.104 0.896 13 N -0.337 5.337 14 C 0.315 3.685 15 O -0.423 6.423 16 C 0.098 3.902 17 C -0.101 4.101 18 C -0.126 4.126 19 C -0.145 4.145 20 C -0.128 4.128 21 C -0.119 4.119 22 C -0.091 4.091 23 C -0.176 4.176 24 C -0.193 4.193 25 C -0.025 4.025 26 O -0.279 6.279 27 C -0.181 4.181 28 C -0.209 4.209 29 C -0.221 4.221 30 H 0.063 0.937 31 H 0.221 0.779 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.244 0.756 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.105 0.895 41 H 0.122 0.878 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.121 0.879 47 H 0.112 0.888 48 H 0.107 0.893 49 H 0.100 0.900 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.979 -14.423 7.427 17.661 hybrid contribution 0.320 1.230 0.254 1.296 sum -6.659 -13.193 7.682 16.656 Atomic orbital electron populations 1.69700 1.04837 1.25264 1.57279 1.24716 0.95492 0.97432 1.02941 0.86183 0.78840 0.84435 0.77093 1.20664 1.21990 1.21965 1.19222 0.90967 0.84042 1.43060 0.91246 1.42337 1.06011 0.99626 1.89511 1.20906 0.93012 0.85202 0.98869 1.20834 0.90238 0.92807 0.89955 0.89557 1.45857 1.13980 1.53223 1.20680 1.20209 0.82225 0.78346 0.87753 1.90582 1.76005 1.42150 1.33563 1.20863 0.90595 0.94435 0.84325 1.19569 0.95539 0.93673 1.01358 1.20881 0.94577 0.98204 0.98890 1.20989 1.00128 0.92795 1.00554 1.21139 0.96195 0.97967 0.97517 1.21107 0.94556 0.97618 0.98635 1.20905 0.99095 0.91512 0.97596 1.23202 0.98127 0.94101 1.02144 1.23280 1.00958 0.98294 0.96817 1.23427 0.98954 0.86731 0.93424 1.88450 1.59014 1.52348 1.28049 1.22641 1.01448 0.91396 1.02569 1.22890 1.02002 1.03199 0.92825 1.23232 1.00614 0.97579 1.00704 0.93708 0.77922 0.94793 0.95805 0.75585 0.86211 0.86380 0.86414 0.85961 0.85661 0.89495 0.87811 0.89669 0.90220 0.91884 0.89467 0.87919 0.88795 0.89260 0.90003 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.26 13.06 55.49 0.72 -26.54 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.90 22.27 29.55 -169.99 -5.02 17.24 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.30 5.43 -59.91 -0.33 -18.62 16 10 C 0.15 2.99 5.80 -4.04 -0.02 2.97 16 11 C 0.17 2.95 2.43 -67.93 -0.17 2.79 16 12 H 0.09 1.73 7.33 -51.93 -0.38 1.35 16 13 N -0.69 -11.97 4.41 -53.80 -0.24 -12.21 16 14 C 0.53 9.07 6.07 -10.98 -0.07 9.00 16 15 O -0.54 -10.20 12.58 5.56 0.07 -10.13 16 16 C 0.14 2.06 0.98 -92.20 -0.09 1.97 16 17 C -0.10 -1.62 4.80 -104.62 -0.50 -2.12 16 18 C -0.11 -1.62 8.75 -39.58 -0.35 -1.96 16 19 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 20 C -0.11 -1.69 10.05 -39.59 -0.40 -2.09 16 21 C -0.10 -1.70 10.05 -39.58 -0.40 -2.10 16 22 C -0.07 -1.26 9.36 -39.58 -0.37 -1.63 16 23 C -0.14 -1.64 4.98 -24.79 -0.12 -1.76 16 24 C -0.16 -1.49 7.16 -24.49 -0.18 -1.66 16 25 C 0.05 0.52 7.78 38.18 0.30 0.82 16 26 O -0.36 -4.99 9.13 -35.23 -0.32 -5.31 16 27 C -0.16 -2.39 5.36 -90.62 -0.49 -2.88 16 28 C -0.17 -2.33 10.18 -26.71 -0.27 -2.60 16 29 C -0.18 -2.60 9.73 -26.71 -0.26 -2.86 16 30 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.39 10.42 7.33 -40.82 -0.30 10.12 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.41 7.26 8.11 -40.82 -0.33 6.92 16 35 H 0.12 1.59 6.85 -52.49 -0.36 1.23 16 36 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 37 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 39 H 0.13 2.18 7.55 -52.49 -0.40 1.78 16 40 H 0.09 0.92 6.88 -51.93 -0.36 0.57 16 41 H 0.10 1.33 6.76 -51.93 -0.35 0.98 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.10 1.43 8.11 -51.93 -0.42 1.01 16 47 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 48 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.12 1.87 5.02 -51.93 -0.26 1.61 16 LS Contribution 401.93 15.07 6.06 6.06 Total: -1.00 -31.11 401.93 -10.85 -41.97 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -7.77 Total: 21.08 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -4.02 Total: -13.53 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.16 Total: -57.37 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.25 Total: -15.44 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.11 -10.85 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699597795.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.816 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds