Wall clock time and date at job start Wed Apr 1 2020 03:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09002 * 109.47682 * 64.99618 * 11 10 9 13 13 N 1.46506 * 109.47012 * 304.99483 * 11 10 9 14 14 C 1.34782 * 119.99726 * 154.99585 * 13 11 10 15 15 O 1.21278 * 120.00302 * 0.02562 * 14 13 11 16 16 C 1.50704 * 119.99703 * 179.97438 * 14 13 11 17 17 C 1.50702 * 109.81768 * 84.11844 * 16 14 13 18 18 C 1.38238 * 119.99804 * 90.42932 * 17 16 14 19 19 C 1.38236 * 119.99681 * 179.78725 * 18 17 16 20 20 C 1.38234 * 120.00201 * 0.43486 * 19 18 17 21 21 C 1.38230 * 120.00070 * 359.82113 * 20 19 18 22 22 C 1.38237 * 120.00048 * 270.69754 * 17 16 14 23 23 C 1.54374 * 109.83049 * 205.00508 * 16 14 13 24 24 C 1.55306 * 102.25377 * 98.16141 * 23 16 14 25 25 C 1.54939 * 100.94165 * 34.13016 * 24 23 16 26 26 O 1.43237 * 109.83291 * 323.14367 * 16 14 13 27 27 C 1.53003 * 109.47530 * 184.99929 * 11 10 9 28 28 C 1.52997 * 117.50018 * 248.62456 * 27 11 10 29 29 C 1.52994 * 117.50312 * 179.97438 * 27 11 10 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 33 33 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 34 34 H 0.97000 * 120.00390 * 335.00529 * 13 11 10 35 35 H 1.07993 * 119.99962 * 359.97438 * 18 17 16 36 36 H 1.08006 * 120.00080 * 180.27633 * 19 18 17 37 37 H 1.07999 * 120.00381 * 179.83461 * 20 19 18 38 38 H 1.08000 * 120.00281 * 179.97438 * 21 20 19 39 39 H 1.07994 * 120.00236 * 359.97438 * 22 17 16 40 40 H 1.09000 * 110.84693 * 216.35315 * 23 16 14 41 41 H 1.09005 * 110.84819 * 339.76079 * 23 16 14 42 42 H 1.08998 * 111.12507 * 152.05074 * 24 23 16 43 43 H 1.09003 * 111.11986 * 276.21186 * 24 23 16 44 44 H 1.09010 * 110.30959 * 82.47026 * 25 24 23 45 45 H 1.08995 * 110.31278 * 204.63920 * 25 24 23 46 46 H 1.09005 * 115.54700 * 34.32403 * 27 11 10 47 47 H 1.09004 * 117.49778 * 359.97438 * 28 27 11 48 48 H 1.08999 * 117.50334 * 145.01706 * 28 27 11 49 49 H 1.09005 * 117.49844 * 214.97844 * 29 27 11 50 50 H 1.08997 * 117.49808 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.4977 -4.8183 -0.9189 13 7 0.1438 -4.6703 1.1431 14 6 -1.0808 -5.2313 1.0941 15 8 -1.4210 -5.8601 0.1145 16 6 -2.0268 -5.0782 2.2572 17 6 -2.7649 -3.7689 2.1465 18 6 -3.9705 -3.7100 1.4726 19 6 -4.6496 -2.5099 1.3749 20 6 -4.1188 -1.3671 1.9432 21 6 -2.9107 -1.4249 2.6124 22 6 -2.2336 -2.6259 2.7140 23 6 -3.0342 -6.2479 2.2704 24 6 -2.4071 -7.2112 3.3148 25 6 -1.7775 -6.2006 4.3062 26 8 -1.2953 -5.1230 3.4878 27 6 1.8243 -6.1406 0.1454 28 6 1.8319 -7.0761 -1.0652 29 6 1.0016 -7.4302 0.1708 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6849 -3.7190 -0.8822 33 1 2.6842 -3.7101 0.8977 34 1 0.4159 -4.1676 1.9268 35 1 -4.3831 -4.6020 1.0252 36 1 -5.5937 -2.4647 0.8523 37 1 -4.6481 -0.4289 1.8645 38 1 -2.4958 -0.5319 3.0561 39 1 -1.2899 -2.6711 3.2370 40 1 -4.0176 -5.9092 2.5963 41 1 -3.0938 -6.7195 1.2895 42 1 -3.1729 -7.8146 3.8022 43 1 -1.6438 -7.8418 2.8588 44 1 -2.5308 -5.8369 5.0051 45 1 -0.9520 -6.6644 4.8460 46 1 2.7237 -6.1054 0.7603 47 1 1.2945 -6.7508 -1.9560 48 1 2.7363 -7.6567 -1.2470 49 1 1.3601 -8.2436 0.8018 50 1 -0.0817 -7.3376 0.0934 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699597795.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:05 Heat of formation + Delta-G solvation = -30.096248 kcal Electronic energy + Delta-G solvation = -32092.912165 eV Core-core repulsion = 28085.497703 eV Total energy + Delta-G solvation = -4007.414462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.06431 -40.21052 -39.25852 -38.23642 -36.60797 -35.00471 -33.54099 -33.20459 -32.58363 -31.64918 -29.90191 -28.92478 -25.99401 -24.90143 -23.84106 -23.44226 -23.09564 -22.90588 -22.23110 -21.32309 -20.86606 -19.34113 -18.78387 -18.24205 -17.51034 -16.86230 -16.74289 -16.58434 -16.30366 -15.98739 -15.77309 -15.63522 -15.18081 -14.92045 -14.91037 -14.70834 -14.47531 -14.28959 -13.98886 -13.76181 -13.52675 -13.18038 -12.99687 -12.83841 -12.76272 -12.69798 -12.51397 -12.30077 -12.21641 -12.16389 -12.03335 -11.84386 -11.83337 -11.76189 -11.43437 -11.19647 -11.03779 -10.96463 -10.42245 -9.93959 -9.75991 -9.62118 -8.97996 -7.88750 -5.19471 0.36099 0.55300 1.47508 1.48120 1.56946 1.57673 2.13771 2.56553 2.58783 2.89585 3.03317 3.43290 3.47535 3.58511 3.58690 3.74080 3.96458 4.05894 4.09074 4.11253 4.14461 4.17477 4.21689 4.29635 4.33787 4.38678 4.45738 4.62322 4.63277 4.71394 4.75181 4.80852 4.82122 4.88387 4.90091 5.00186 5.03875 5.06399 5.10104 5.15041 5.19272 5.28306 5.36794 5.52079 5.54517 5.56341 5.58813 5.67223 5.91000 6.11700 6.29006 6.58014 7.20861 7.36846 8.08242 8.34088 9.32529 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008376 B = 0.005236 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.201133 B = 5346.412419 C = 7726.147541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.065 4.065 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.297 1.297 6 H -0.293 1.293 7 C -0.248 4.248 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.150 3.850 11 C 0.177 3.823 12 H 0.058 0.942 13 N -0.690 5.690 14 C 0.525 3.475 15 O -0.564 6.564 16 C 0.145 3.855 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.093 4.093 23 C -0.136 4.136 24 C -0.145 4.145 25 C 0.042 3.958 26 O -0.377 6.377 27 C -0.168 4.168 28 C -0.162 4.162 29 C -0.177 4.177 30 H 0.249 0.751 31 H 0.374 0.626 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.405 0.595 35 H 0.138 0.862 36 H 0.149 0.851 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.104 0.896 46 H 0.118 0.882 47 H 0.081 0.919 48 H 0.116 0.884 49 H 0.105 0.895 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 -15.784 8.626 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.258 4.258 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.225 1.225 6 H -0.221 1.221 7 C -0.380 4.380 8 H 0.093 0.907 9 N -0.383 5.383 10 C 0.023 3.977 11 C 0.072 3.928 12 H 0.076 0.924 13 N -0.338 5.338 14 C 0.311 3.689 15 O -0.444 6.444 16 C 0.102 3.898 17 C -0.110 4.110 18 C -0.133 4.133 19 C -0.144 4.144 20 C -0.136 4.136 21 C -0.141 4.141 22 C -0.111 4.111 23 C -0.174 4.174 24 C -0.182 4.182 25 C -0.033 4.033 26 O -0.296 6.296 27 C -0.188 4.188 28 C -0.200 4.200 29 C -0.214 4.214 30 H 0.057 0.943 31 H 0.206 0.794 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.241 0.759 35 H 0.156 0.844 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.134 0.866 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.122 0.878 46 H 0.136 0.864 47 H 0.100 0.900 48 H 0.134 0.866 49 H 0.123 0.877 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.845 -15.975 7.991 19.129 hybrid contribution 0.301 1.671 0.070 1.699 sum -6.544 -14.304 8.061 17.675 Atomic orbital electron populations 1.69857 1.06198 1.25571 1.58688 1.25468 0.96322 1.00550 1.03504 0.85170 0.78281 0.80368 0.76457 1.19287 1.22468 1.22070 1.19579 0.91369 0.85101 1.41902 0.90726 1.42469 1.05551 1.00780 1.89515 1.21018 0.93382 0.84170 0.99125 1.20599 0.89626 0.93559 0.89015 0.92419 1.45882 1.14396 1.53292 1.20258 1.20706 0.82186 0.77685 0.88315 1.90566 1.76331 1.42972 1.34558 1.20788 0.90350 0.94866 0.83813 1.19785 0.96082 0.93894 1.01198 1.21201 0.94311 0.99273 0.98467 1.21385 1.01070 0.92135 0.99785 1.21428 0.95732 0.99372 0.97086 1.21245 0.95681 0.97462 0.99737 1.20905 0.99003 0.92426 0.98752 1.23215 0.98194 0.93488 1.02471 1.23270 1.01412 0.97760 0.95803 1.23708 1.00068 0.86170 0.93390 1.88440 1.59376 1.53842 1.27982 1.22537 1.01865 0.90089 1.04260 1.22975 1.02730 1.02375 0.91911 1.23187 0.99436 0.97461 1.01354 0.94252 0.79401 0.94569 0.94696 0.75949 0.84391 0.83306 0.84413 0.86517 0.87050 0.88075 0.88873 0.86637 0.90641 0.90717 0.87839 0.86420 0.90032 0.86552 0.87691 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.68 13.06 21.65 0.28 -57.40 16 2 C -0.07 -3.71 5.50 84.86 0.47 -3.25 16 3 Si 0.97 46.22 29.55 68.60 2.03 48.24 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -37.91 5.43 -343.46 -1.87 -39.78 16 10 C 0.15 6.10 5.80 86.38 0.50 6.60 16 11 C 0.18 6.37 2.43 44.99 0.11 6.48 16 12 H 0.06 2.41 7.33 -2.39 -0.02 2.39 16 13 N -0.69 -24.60 4.41 -442.51 -1.95 -26.55 16 14 C 0.52 18.30 6.07 87.66 0.53 18.83 16 15 O -0.56 -21.55 12.58 -3.02 -0.04 -21.59 16 16 C 0.14 4.24 0.98 -11.82 -0.01 4.23 16 17 C -0.11 -3.55 4.80 -19.86 -0.10 -3.64 16 18 C -0.11 -3.38 8.75 22.27 0.19 -3.18 16 19 C -0.13 -3.53 10.05 22.27 0.22 -3.30 16 20 C -0.12 -3.62 10.05 22.27 0.22 -3.40 16 21 C -0.12 -4.34 10.05 22.27 0.22 -4.11 16 22 C -0.09 -3.34 9.36 22.27 0.21 -3.13 16 23 C -0.14 -3.06 4.98 31.85 0.16 -2.90 16 24 C -0.15 -2.45 7.16 32.05 0.23 -2.22 16 25 C 0.04 0.79 7.78 72.64 0.56 1.36 16 26 O -0.38 -10.40 9.13 -148.98 -1.36 -11.76 16 27 C -0.17 -4.81 5.36 -10.80 -0.06 -4.87 16 28 C -0.16 -4.15 10.18 30.61 0.31 -3.84 16 29 C -0.18 -4.73 9.73 30.61 0.30 -4.43 16 30 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.37 20.90 7.33 -92.71 -0.68 20.22 16 32 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.41 14.92 8.11 -92.71 -0.75 14.17 16 35 H 0.14 3.48 6.85 -2.91 -0.02 3.46 16 36 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 38 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 39 H 0.11 4.18 7.55 -2.91 -0.02 4.16 16 40 H 0.10 1.96 6.88 -2.39 -0.02 1.94 16 41 H 0.09 2.32 6.76 -2.38 -0.02 2.31 16 42 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.12 3.04 8.11 -2.38 -0.02 3.02 16 47 H 0.08 2.29 8.05 -2.38 -0.02 2.27 16 48 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 50 H 0.10 3.02 5.02 -2.39 -0.01 3.01 16 Total: -1.00 -68.09 401.93 1.54 -66.55 By element: Atomic # 1 Polarization: 60.49 SS G_CDS: -0.47 Total: 60.02 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 4.92 Total: -17.74 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -3.54 Total: -123.73 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.40 Total: -33.34 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -68.09 1.54 -66.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699597795.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.455 kcal (2) G-P(sol) polarization free energy of solvation -68.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds