Wall clock time and date at job start Wed Apr 1 2020 02:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00188 * 2 1 4 4 H 1.48501 * 109.46657 * 266.15935 * 3 2 1 5 5 H 1.48500 * 109.47188 * 26.15162 * 3 2 1 6 6 H 1.48496 * 109.47498 * 146.15645 * 3 2 1 7 7 C 1.38809 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99991 * 334.55190 * 7 2 1 9 9 N 1.36931 * 120.00122 * 154.54907 * 7 2 1 10 10 C 1.47029 * 125.64763 * 339.19607 * 9 7 2 11 11 C 1.54319 * 107.27193 * 181.02594 * 10 9 7 12 12 C 1.55159 * 102.94600 * 22.19354 * 11 10 9 13 13 O 1.42895 * 111.00615 * 82.57099 * 12 11 10 14 14 C 1.52998 * 111.00726 * 206.42768 * 12 11 10 15 15 N 1.46496 * 109.47175 * 179.97438 * 14 12 11 16 16 C 1.34779 * 120.00251 * 179.97438 * 15 14 12 17 17 O 1.21282 * 119.99969 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00327 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.47208 * 188.39625 * 18 16 15 20 20 C 1.50701 * 115.54811 * 267.79631 * 19 18 16 21 21 C 1.38236 * 120.00419 * 136.27938 * 20 19 18 22 22 C 1.38236 * 120.00205 * 179.76506 * 21 20 19 23 23 C 1.38233 * 119.99801 * 0.50962 * 22 21 20 24 24 C 1.38238 * 120.00041 * 359.74227 * 23 22 21 25 25 C 1.38234 * 120.00268 * 0.02562 * 24 23 22 26 26 C 1.52991 * 117.49914 * 122.08790 * 19 18 16 27 27 C 1.53000 * 117.50030 * 53.46013 * 19 18 16 28 28 C 1.47425 * 125.65223 * 158.89431 * 9 7 2 29 29 H 0.97002 * 120.00615 * 185.18935 * 1 2 3 30 30 H 1.08995 * 109.87921 * 300.44521 * 10 9 7 31 31 H 1.08993 * 109.88020 * 61.60610 * 10 9 7 32 32 H 1.08997 * 110.72123 * 140.55516 * 11 10 9 33 33 H 1.09003 * 110.71793 * 263.83191 * 11 10 9 34 34 H 0.96695 * 114.00173 * 180.02562 * 13 12 11 35 35 H 1.08999 * 109.46828 * 299.99854 * 14 12 11 36 36 H 1.08997 * 109.47046 * 59.99577 * 14 12 11 37 37 H 0.97000 * 120.00530 * 0.02562 * 15 14 12 38 38 H 1.09001 * 109.47028 * 308.39504 * 18 16 15 39 39 H 1.09003 * 109.47001 * 68.39516 * 18 16 15 40 40 H 1.07996 * 119.99292 * 359.97438 * 21 20 19 41 41 H 1.07994 * 119.99664 * 180.22883 * 22 21 20 42 42 H 1.08003 * 120.00188 * 179.72663 * 23 22 21 43 43 H 1.08000 * 119.99994 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00186 * 179.97438 * 25 24 23 45 45 H 1.09002 * 117.50339 * 359.97438 * 26 19 18 46 46 H 1.09005 * 117.50152 * 145.02352 * 26 19 18 47 47 H 1.08999 * 117.49813 * 214.97793 * 27 19 18 48 48 H 1.08994 * 117.49753 * 359.97438 * 27 19 18 49 49 H 1.09005 * 110.36619 * 274.74576 * 28 9 7 50 50 H 1.08998 * 110.37060 * 37.06102 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5789 1.9994 -1.3970 5 1 1.4094 2.6748 0.6171 6 1 3.5047 1.4650 0.7797 7 6 2.0102 -1.2021 0.0005 8 1 1.5487 -2.0919 0.4029 9 7 3.2798 -1.2599 -0.5090 10 6 3.8695 -0.2978 -1.4515 11 6 5.3018 -0.7804 -1.7629 12 6 5.2416 -2.2923 -1.4193 13 8 4.6951 -3.0430 -2.5054 14 6 6.6232 -2.8217 -1.0299 15 7 6.5277 -4.2487 -0.7124 16 6 7.6287 -4.9317 -0.3411 17 8 8.6985 -4.3648 -0.2695 18 6 7.5305 -6.3997 -0.0151 19 6 8.8585 -6.8816 0.5724 20 6 9.8438 -7.4411 -0.4211 21 6 11.1789 -7.0913 -0.3427 22 6 12.0835 -7.6084 -1.2511 23 6 11.6512 -8.4671 -2.2444 24 6 10.3153 -8.8129 -2.3260 25 6 9.4115 -8.2996 -1.4147 26 6 8.8276 -7.5091 1.9674 27 6 9.4217 -6.1131 1.7696 28 6 4.2841 -2.2937 -0.1987 29 1 -0.4851 -0.8366 0.0760 30 1 3.2807 -0.2685 -2.3683 31 1 3.9025 0.6927 -0.9979 32 1 5.5377 -0.6336 -2.8168 33 1 6.0271 -0.2696 -1.1294 34 1 4.6373 -3.9934 -2.3368 35 1 7.3142 -2.6795 -1.8608 36 1 6.9875 -2.2793 -0.1575 37 1 5.6722 -4.7022 -0.7700 38 1 6.7332 -6.5581 0.7111 39 1 7.3107 -6.9598 -0.9240 40 1 11.5156 -6.4165 0.4304 41 1 13.1271 -7.3379 -1.1875 42 1 12.3572 -8.8677 -2.9569 43 1 9.9775 -9.4835 -3.1023 44 1 8.3677 -8.5694 -1.4788 45 1 7.8612 -7.5783 2.4669 46 1 9.5199 -8.3270 2.1668 47 1 10.5049 -6.0127 1.8388 48 1 8.8464 -5.2639 2.1383 49 1 4.8255 -2.0355 0.7114 50 1 3.8060 -3.2675 -0.0933 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699896310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:59 Heat of formation + Delta-G solvation = -26.954204 kcal Electronic energy + Delta-G solvation = -30023.694466 eV Core-core repulsion = 26016.416253 eV Total energy + Delta-G solvation = -4007.278212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.44033 -40.60089 -39.70793 -37.81397 -36.92575 -35.21500 -34.39938 -32.16026 -31.77359 -31.40019 -30.76787 -29.59434 -27.27073 -25.01007 -24.09050 -23.85000 -22.73682 -22.63871 -21.69163 -21.49023 -20.28524 -19.57369 -18.58896 -18.15353 -17.61741 -17.15932 -16.67593 -16.46091 -16.28918 -15.95700 -15.87634 -15.53170 -15.40635 -15.15766 -14.90127 -14.75727 -14.69358 -14.34882 -14.26996 -13.73491 -13.60497 -13.47298 -13.13758 -13.10816 -12.91735 -12.85674 -12.54483 -12.36354 -12.30367 -11.96596 -11.93677 -11.86094 -11.63606 -11.44977 -11.31856 -11.03088 -11.00844 -10.72852 -10.54186 -10.12091 -9.79126 -9.45256 -9.18048 -8.59734 -5.51158 0.46288 0.53021 1.38911 1.50210 1.69471 1.70118 2.06260 2.49927 2.75569 2.98577 3.08840 3.10486 3.29087 3.52631 3.57885 3.70860 3.74691 3.81325 3.83231 3.89888 4.15363 4.20432 4.26810 4.29829 4.31693 4.38302 4.56817 4.60073 4.60410 4.66974 4.70642 4.75286 4.79197 4.81334 4.85815 4.87980 4.93043 5.05236 5.06529 5.16501 5.17451 5.21594 5.26138 5.35818 5.61434 5.62177 5.65453 5.74819 6.11366 6.15070 6.49384 6.72008 6.80678 7.26633 7.45096 8.12172 8.81664 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022313 B = 0.002163 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.598106 B =12943.715199 C =13186.153068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.072 4.072 3 Si 1.107 2.893 4 H -0.273 1.273 5 H -0.304 1.304 6 H -0.272 1.272 7 C -0.320 4.320 8 H 0.041 0.959 9 N -0.623 5.623 10 C 0.116 3.884 11 C -0.110 4.110 12 C 0.122 3.878 13 O -0.551 6.551 14 C 0.120 3.880 15 N -0.724 5.724 16 C 0.512 3.488 17 O -0.565 6.565 18 C -0.101 4.101 19 C -0.082 4.082 20 C -0.049 4.049 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.136 4.136 24 C -0.125 4.125 25 C -0.127 4.127 26 C -0.148 4.148 27 C -0.161 4.161 28 C 0.108 3.892 29 H 0.249 0.751 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.383 0.617 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.409 0.591 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.133 0.867 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.114 0.886 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.084 0.916 49 H 0.037 0.963 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.270 -19.725 -2.016 31.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.268 4.268 3 Si 0.935 3.065 4 H -0.199 1.199 5 H -0.232 1.232 6 H -0.199 1.199 7 C -0.449 4.449 8 H 0.059 0.941 9 N -0.350 5.350 10 C -0.009 4.009 11 C -0.148 4.148 12 C 0.080 3.920 13 O -0.358 6.358 14 C -0.005 4.005 15 N -0.378 5.378 16 C 0.300 3.700 17 O -0.443 6.443 18 C -0.141 4.141 19 C -0.083 4.083 20 C -0.049 4.049 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.153 4.153 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.184 4.184 27 C -0.198 4.198 28 C -0.017 4.017 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.232 0.768 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.246 0.754 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.151 0.849 42 H 0.157 0.843 43 H 0.160 0.840 44 H 0.157 0.843 45 H 0.132 0.868 46 H 0.118 0.882 47 H 0.110 0.890 48 H 0.102 0.898 49 H 0.055 0.945 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 24.728 -17.116 -2.268 30.159 hybrid contribution -0.836 -2.151 0.509 2.363 sum 23.892 -19.268 -1.760 30.744 Atomic orbital electron populations 1.71037 1.07082 1.29297 1.51962 1.27162 0.96449 1.04493 0.98647 0.83169 0.73569 0.72278 0.77516 1.19938 1.23211 1.19857 1.19852 0.90195 0.95040 1.39777 0.94098 1.44719 1.10869 1.29408 1.49972 1.21707 0.94100 0.92821 0.92251 1.22622 0.95643 0.92421 1.04081 1.22431 0.90416 0.92601 0.86527 1.86600 1.85812 1.23499 1.39859 1.21665 0.95617 0.81846 1.01381 1.45906 1.11832 1.10044 1.69996 1.21086 0.83115 0.90137 0.75676 1.90705 1.29179 1.71455 1.52962 1.21337 0.97357 0.90703 1.04669 1.19756 0.95225 1.04656 0.88645 1.19151 0.93220 0.96668 0.95857 1.21226 0.93521 1.00031 1.00138 1.21386 1.00206 0.97746 0.95432 1.21451 0.96649 0.98471 0.98777 1.21447 0.93477 1.00147 0.99259 1.21221 1.00817 0.97487 0.94956 1.23298 1.03708 0.96125 0.95319 1.22891 1.00881 0.95203 1.00859 1.22470 0.90490 0.92998 0.95752 0.94123 0.96091 0.96039 0.88220 0.87518 0.76755 0.90510 0.90678 0.75440 0.86140 0.86166 0.86427 0.84900 0.84334 0.84047 0.84337 0.86769 0.88168 0.88985 0.89783 0.94530 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.26 13.70 21.65 0.30 -60.96 16 2 C -0.07 -4.35 5.41 84.86 0.46 -3.89 16 3 Si 1.11 54.48 24.89 68.60 1.71 56.19 16 4 H -0.27 -12.46 6.83 99.48 0.68 -11.78 16 5 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 6 H -0.27 -12.40 7.02 99.48 0.70 -11.70 16 7 C -0.32 -18.57 10.39 84.03 0.87 -17.70 16 8 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 9 N -0.62 -29.91 3.16 -691.55 -2.19 -32.09 16 10 C 0.12 4.94 5.47 86.73 0.47 5.41 16 11 C -0.11 -3.37 6.15 31.78 0.20 -3.17 16 12 C 0.12 3.48 0.97 -9.32 -0.01 3.47 16 13 O -0.55 -15.78 13.21 -148.98 -1.97 -17.75 16 14 C 0.12 2.78 4.88 86.38 0.42 3.20 16 15 N -0.72 -13.63 5.20 -463.07 -2.41 -16.03 16 16 C 0.51 10.67 7.48 87.66 0.66 11.33 16 17 O -0.56 -16.27 14.93 -3.04 -0.05 -16.32 16 18 C -0.10 -1.41 5.73 29.85 0.17 -1.24 16 19 C -0.08 -1.36 1.60 -52.93 -0.08 -1.44 16 20 C -0.05 -0.90 5.37 -19.86 -0.11 -1.00 16 21 C -0.13 -2.56 9.37 22.27 0.21 -2.35 16 22 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 23 C -0.14 -2.01 10.05 22.27 0.22 -1.79 16 24 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 25 C -0.13 -1.98 9.13 22.27 0.20 -1.77 16 26 C -0.15 -1.98 9.88 30.59 0.30 -1.68 16 27 C -0.16 -2.94 8.19 30.60 0.25 -2.69 16 28 C 0.11 3.92 6.22 86.93 0.54 4.46 16 29 H 0.25 16.09 8.73 -92.71 -0.81 15.28 16 30 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.02 0.96 3.59 -2.39 -0.01 0.95 16 32 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.11 2.76 8.04 -2.39 -0.02 2.74 16 34 H 0.38 7.70 7.69 -74.06 -0.57 7.13 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.85 8.07 -2.39 -0.02 1.83 16 37 H 0.41 5.80 7.28 -92.71 -0.68 5.12 16 38 H 0.12 1.13 7.87 -2.39 -0.02 1.11 16 39 H 0.12 1.24 6.47 -2.39 -0.02 1.22 16 40 H 0.12 2.29 6.04 -2.91 -0.02 2.27 16 41 H 0.13 1.74 8.06 -2.91 -0.02 1.71 16 42 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 43 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.14 1.53 7.02 -2.91 -0.02 1.51 16 45 H 0.11 1.17 8.03 -2.39 -0.02 1.16 16 46 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.09 1.72 6.20 -2.39 -0.01 1.70 16 48 H 0.08 1.74 7.81 -2.39 -0.02 1.72 16 49 H 0.04 1.31 7.99 -2.38 -0.02 1.30 16 50 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -79.11 396.21 0.27 -78.84 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.35 Total: 22.52 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 5.23 Total: -14.39 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -4.30 Total: -109.09 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -2.01 Total: -34.07 kcal Atomic # 14 Polarization: 54.48 SS G_CDS: 1.71 Total: 56.19 kcal Total: -79.11 0.27 -78.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699896310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.888 kcal (2) G-P(sol) polarization free energy of solvation -79.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds