Wall clock time and date at job start Wed Apr 1 2020 02:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99874 * 2 1 4 4 H 1.48497 * 109.47339 * 271.13449 * 3 2 1 5 5 H 1.48498 * 109.47126 * 31.13598 * 3 2 1 6 6 H 1.48504 * 109.47076 * 151.13468 * 3 2 1 7 7 C 1.38813 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99546 * 338.47016 * 7 2 1 9 9 N 1.36931 * 120.00092 * 158.46494 * 7 2 1 10 10 C 1.47427 * 125.64780 * 328.86761 * 9 7 2 11 11 C 1.54913 * 104.83345 * 204.16479 * 10 9 7 12 12 C 1.55162 * 101.58027 * 322.99114 * 11 10 9 13 13 O 1.42894 * 110.86857 * 277.06596 * 12 11 10 14 14 C 1.52995 * 110.71598 * 153.86381 * 12 11 10 15 15 N 1.46506 * 109.46766 * 190.02485 * 14 12 11 16 16 C 1.34777 * 120.00026 * 180.02562 * 15 14 12 17 17 O 1.21284 * 120.00016 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00049 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.46940 * 180.88486 * 18 16 15 20 20 C 1.50702 * 115.55906 * 280.08362 * 19 18 16 21 21 C 1.38233 * 120.00298 * 138.91054 * 20 19 18 22 22 C 1.38236 * 120.00503 * 179.81207 * 21 20 19 23 23 C 1.38228 * 119.99593 * 0.39727 * 22 21 20 24 24 C 1.38238 * 120.00170 * 359.85960 * 23 22 21 25 25 C 1.38233 * 119.99937 * 359.95183 * 24 23 22 26 26 C 1.52995 * 117.50431 * 65.77685 * 19 18 16 27 27 C 1.52996 * 60.03114 * 107.49890 * 26 19 18 28 28 C 1.47016 * 125.65107 * 148.91128 * 9 7 2 29 29 H 0.97002 * 119.99961 * 0.02562 * 1 2 3 30 30 H 1.09004 * 110.37106 * 323.00085 * 10 9 7 31 31 H 1.09000 * 110.36536 * 85.32867 * 10 9 7 32 32 H 1.09001 * 111.00462 * 204.91466 * 11 10 9 33 33 H 1.08996 * 111.00251 * 81.06674 * 11 10 9 34 34 H 0.96709 * 113.99515 * 177.45301 * 13 12 11 35 35 H 1.09002 * 109.47632 * 70.02821 * 14 12 11 36 36 H 1.08995 * 109.47391 * 310.02198 * 14 12 11 37 37 H 0.96997 * 119.99901 * 359.97438 * 15 14 12 38 38 H 1.08991 * 109.47025 * 60.88020 * 18 16 15 39 39 H 1.09005 * 109.47054 * 300.87625 * 18 16 15 40 40 H 1.08010 * 119.99472 * 0.02562 * 21 20 19 41 41 H 1.07992 * 119.99858 * 180.23303 * 22 21 20 42 42 H 1.08003 * 120.00101 * 179.83349 * 23 22 21 43 43 H 1.08004 * 120.00147 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.99767 * 180.02562 * 25 24 23 45 45 H 1.08996 * 117.49588 * 359.97438 * 26 19 18 46 46 H 1.09004 * 117.50022 * 215.00047 * 26 19 18 47 47 H 1.09010 * 117.49628 * 107.48128 * 27 26 19 48 48 H 1.08998 * 117.50144 * 252.46768 * 27 26 19 49 49 H 1.09004 * 109.88232 * 59.48929 * 28 9 7 50 50 H 1.08998 * 110.01164 * 298.39371 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4736 2.0604 -1.3998 5 1 1.4598 2.6456 0.7239 6 1 3.5595 1.4334 0.6759 7 6 2.0103 -1.2021 0.0005 8 1 1.5267 -2.1046 0.3442 9 7 3.3079 -1.2437 -0.4347 10 6 3.8942 -0.3762 -1.4726 11 6 5.0983 -1.1784 -2.0262 12 6 5.6350 -1.8615 -0.7406 13 8 6.4855 -0.9753 -0.0104 14 6 6.3731 -3.1569 -1.0838 15 7 6.6578 -3.8977 0.1476 16 6 7.3063 -5.0778 0.0896 17 8 7.6538 -5.5266 -0.9822 18 6 7.5996 -5.8396 1.3564 19 6 8.3576 -7.1240 1.0151 20 6 7.5104 -8.2658 0.5155 21 6 7.9552 -9.0495 -0.5327 22 6 7.1799 -10.0993 -0.9885 23 6 5.9559 -10.3602 -0.4014 24 6 5.5086 -9.5731 0.6433 25 6 6.2857 -8.5258 1.1016 26 6 9.7646 -6.9802 0.4315 27 6 9.5798 -7.4717 1.8685 28 6 4.3469 -2.1613 0.0549 29 1 -0.4850 0.8401 -0.0004 30 1 3.1684 -0.1873 -2.2637 31 1 4.2329 0.5629 -1.0352 32 1 5.8466 -0.5127 -2.4564 33 1 4.7718 -1.9197 -2.7554 34 1 6.8149 -1.3427 0.8214 35 1 7.3092 -2.9188 -1.5892 36 1 5.7513 -3.7667 -1.7392 37 1 6.3801 -3.5386 1.0048 38 1 6.6631 -6.0915 1.8538 39 1 8.2083 -5.2234 2.0182 40 1 8.9103 -8.8438 -0.9933 41 1 7.5292 -10.7139 -1.8049 42 1 5.3489 -11.1787 -0.7593 43 1 4.5521 -9.7767 1.1017 44 1 5.9364 -7.9112 1.9180 45 1 10.1500 -5.9705 0.2902 46 1 10.0773 -7.7112 -0.3142 47 1 9.7707 -8.5262 2.0683 48 1 9.8444 -6.7856 2.6731 49 1 4.0392 -3.1934 -0.1133 50 1 4.5207 -1.9950 1.1180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699896311.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:04 Heat of formation + Delta-G solvation = -4.949151 kcal Electronic energy + Delta-G solvation = -30233.174963 eV Core-core repulsion = 26226.850961 eV Total energy + Delta-G solvation = -4006.324002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.56156 -39.54850 -38.57407 -37.08489 -35.33751 -34.21966 -32.29630 -31.36794 -30.68470 -30.45500 -29.57267 -28.20566 -25.95564 -23.76290 -23.17694 -23.11618 -22.05444 -21.25403 -20.55049 -20.02693 -19.49491 -17.63163 -17.37885 -17.03833 -16.28142 -15.91203 -15.71857 -15.23692 -15.16009 -15.06402 -14.75484 -14.31199 -14.16758 -14.09872 -13.81335 -13.59618 -13.45580 -13.05694 -12.93234 -12.74424 -12.46364 -12.12914 -12.08490 -11.87282 -11.73229 -11.66088 -11.26080 -11.24206 -11.19057 -10.85165 -10.79305 -10.76408 -10.36695 -10.32417 -10.12442 -9.80453 -9.69794 -9.56362 -9.11180 -9.04415 -8.70773 -8.62421 -6.94298 -6.02701 -3.41110 1.20136 1.28044 2.62152 2.97877 3.35250 3.46834 3.47821 3.55558 3.83317 4.25718 4.27354 4.42370 4.49411 4.51998 4.54552 4.66839 4.83980 4.89680 4.94978 4.98090 5.01276 5.09161 5.14145 5.23019 5.23388 5.32281 5.38965 5.40589 5.53227 5.58700 5.65551 5.72112 5.80589 5.83777 5.87247 5.89643 5.94177 6.07698 6.17439 6.30170 6.34912 6.38527 6.39262 6.41398 6.48196 6.64684 6.74847 6.86412 7.39935 7.75447 7.79435 8.18645 8.27707 8.79278 9.62857 10.16819 11.13150 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015570 B = 0.002509 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.882272 B =11156.988567 C =12074.112516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.033 3.967 3 Si 0.880 3.120 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.250 4.250 8 H 0.085 0.915 9 N -0.602 5.602 10 C 0.120 3.880 11 C -0.115 4.115 12 C 0.104 3.896 13 O -0.545 6.545 14 C 0.107 3.893 15 N -0.732 5.732 16 C 0.513 3.487 17 O -0.527 6.527 18 C -0.106 4.106 19 C -0.072 4.072 20 C -0.034 4.034 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.151 4.151 27 C -0.166 4.166 28 C 0.112 3.888 29 H 0.265 0.735 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.368 0.632 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.399 0.601 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.040 0.960 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.650 -17.213 3.096 26.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.167 4.167 3 Si 0.709 3.291 4 H -0.212 1.212 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.378 4.378 8 H 0.102 0.898 9 N -0.329 5.329 10 C -0.005 4.005 11 C -0.154 4.154 12 C 0.062 3.938 13 O -0.350 6.350 14 C -0.017 4.017 15 N -0.385 5.385 16 C 0.299 3.701 17 O -0.402 6.402 18 C -0.145 4.145 19 C -0.073 4.073 20 C -0.034 4.034 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.145 4.145 24 C -0.136 4.136 25 C -0.135 4.135 26 C -0.188 4.188 27 C -0.203 4.203 28 C -0.014 4.014 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.215 0.785 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.233 0.767 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.117 0.883 49 H 0.058 0.942 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 19.515 -17.054 1.831 25.981 hybrid contribution 0.192 0.891 0.937 1.307 sum 19.707 -16.163 2.768 25.638 Atomic orbital electron populations 1.69840 1.05813 1.26848 1.51958 1.25321 0.95158 0.97708 0.98513 0.86856 0.79926 0.84374 0.77906 1.21192 1.22805 1.19430 1.18529 0.83913 0.94671 1.40643 0.89761 1.44598 1.07119 1.40539 1.40651 1.21904 0.93133 0.93649 0.91831 1.22744 0.98254 1.00013 0.94358 1.22519 0.89246 0.87789 0.94220 1.86600 1.67242 1.43782 1.37360 1.21991 1.00594 0.92152 0.86982 1.46024 1.59847 1.22252 1.10352 1.20521 0.77534 0.80739 0.91317 1.90711 1.51342 1.67531 1.30664 1.21257 1.02417 0.94700 0.96170 1.19664 0.88798 0.93694 1.05137 1.18899 0.94333 0.94573 0.95557 1.21027 1.00331 0.95136 0.96223 1.21114 0.94949 0.97790 0.99874 1.21137 0.96431 0.99988 0.96942 1.21125 0.99633 0.95605 0.97201 1.20958 0.94262 0.98021 1.00250 1.22960 0.97299 1.02808 0.95740 1.23221 0.99924 1.02365 0.94764 1.22050 0.88183 0.95267 0.95913 0.92564 0.92390 0.95341 0.90449 0.89634 0.78505 0.90777 0.90319 0.76715 0.88124 0.88447 0.86033 0.86238 0.86276 0.86046 0.86151 0.88598 0.88391 0.88522 0.88348 0.94220 0.94958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.97 55.49 0.78 -26.88 16 2 C 0.03 0.97 5.43 -17.43 -0.09 0.88 16 3 Si 0.88 22.70 24.78 -169.99 -4.21 18.49 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.27 -6.94 6.81 56.52 0.38 -6.55 16 7 C -0.25 -7.06 10.49 -15.06 -0.16 -7.22 16 8 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 9 N -0.60 -14.42 3.01 -170.07 -0.51 -14.93 16 10 C 0.12 2.61 4.96 -2.53 -0.01 2.60 16 11 C -0.11 -1.94 6.26 -24.58 -0.15 -2.09 16 12 C 0.10 1.61 0.93 -88.78 -0.08 1.52 16 13 O -0.55 -8.26 13.10 -35.23 -0.46 -8.72 16 14 C 0.11 1.42 4.80 -4.04 -0.02 1.40 16 15 N -0.73 -8.13 5.13 -60.29 -0.31 -8.44 16 16 C 0.51 6.08 7.71 -10.98 -0.08 5.99 16 17 O -0.53 -8.14 15.33 5.55 0.09 -8.05 16 18 C -0.11 -0.90 5.51 -27.88 -0.15 -1.06 16 19 C -0.07 -0.67 1.41 -155.63 -0.22 -0.89 16 20 C -0.03 -0.36 5.26 -104.62 -0.55 -0.91 16 21 C -0.11 -1.17 9.38 -39.58 -0.37 -1.54 16 22 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 23 C -0.13 -1.23 10.05 -39.59 -0.40 -1.62 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 25 C -0.12 -1.20 9.27 -39.58 -0.37 -1.57 16 26 C -0.15 -1.34 8.70 -26.74 -0.23 -1.57 16 27 C -0.17 -1.20 9.88 -26.70 -0.26 -1.47 16 28 C 0.11 2.09 5.76 -3.07 -0.02 2.08 16 29 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.06 1.32 7.98 -51.93 -0.41 0.90 16 31 H 0.03 0.67 5.41 -51.93 -0.28 0.39 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.33 7.96 -51.93 -0.41 0.91 16 34 H 0.37 4.04 8.44 45.56 0.38 4.42 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 37 H 0.40 3.60 7.47 -40.82 -0.30 3.30 16 38 H 0.10 0.76 6.51 -51.93 -0.34 0.42 16 39 H 0.10 0.60 7.95 -51.93 -0.41 0.19 16 40 H 0.12 1.18 5.99 -52.48 -0.31 0.87 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 44 H 0.12 1.04 6.78 -52.49 -0.36 0.69 16 45 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.10 0.85 6.14 -51.93 -0.32 0.53 16 47 H 0.10 0.68 8.14 -51.92 -0.42 0.25 16 48 H 0.10 0.57 8.09 -51.93 -0.42 0.15 16 49 H 0.04 0.74 7.82 -51.93 -0.41 0.34 16 50 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 LS Contribution 397.99 15.07 6.00 6.00 Total: -1.00 -35.23 397.99 -9.58 -44.81 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.97 Total: 6.32 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -3.98 Total: -8.60 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.05 Total: -50.25 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.38 Total: -16.77 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.21 Total: 18.49 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.23 -9.58 -44.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699896311.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.860 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds