Wall clock time and date at job start Wed Apr 1 2020 02:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99874 * 2 1 4 4 H 1.48497 * 109.47339 * 271.13449 * 3 2 1 5 5 H 1.48498 * 109.47126 * 31.13598 * 3 2 1 6 6 H 1.48504 * 109.47076 * 151.13468 * 3 2 1 7 7 C 1.38813 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99546 * 338.47016 * 7 2 1 9 9 N 1.36931 * 120.00092 * 158.46494 * 7 2 1 10 10 C 1.47427 * 125.64780 * 328.86761 * 9 7 2 11 11 C 1.54913 * 104.83345 * 204.16479 * 10 9 7 12 12 C 1.55162 * 101.58027 * 322.99114 * 11 10 9 13 13 O 1.42894 * 110.86857 * 277.06596 * 12 11 10 14 14 C 1.52995 * 110.71598 * 153.86381 * 12 11 10 15 15 N 1.46506 * 109.46766 * 190.02485 * 14 12 11 16 16 C 1.34777 * 120.00026 * 180.02562 * 15 14 12 17 17 O 1.21284 * 120.00016 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00049 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.46940 * 180.88486 * 18 16 15 20 20 C 1.50702 * 115.55906 * 280.08362 * 19 18 16 21 21 C 1.38233 * 120.00298 * 138.91054 * 20 19 18 22 22 C 1.38236 * 120.00503 * 179.81207 * 21 20 19 23 23 C 1.38228 * 119.99593 * 0.39727 * 22 21 20 24 24 C 1.38238 * 120.00170 * 359.85960 * 23 22 21 25 25 C 1.38233 * 119.99937 * 359.95183 * 24 23 22 26 26 C 1.52995 * 117.50431 * 65.77685 * 19 18 16 27 27 C 1.52996 * 60.03114 * 107.49890 * 26 19 18 28 28 C 1.47016 * 125.65107 * 148.91128 * 9 7 2 29 29 H 0.97002 * 119.99961 * 0.02562 * 1 2 3 30 30 H 1.09004 * 110.37106 * 323.00085 * 10 9 7 31 31 H 1.09000 * 110.36536 * 85.32867 * 10 9 7 32 32 H 1.09001 * 111.00462 * 204.91466 * 11 10 9 33 33 H 1.08996 * 111.00251 * 81.06674 * 11 10 9 34 34 H 0.96709 * 113.99515 * 177.45301 * 13 12 11 35 35 H 1.09002 * 109.47632 * 70.02821 * 14 12 11 36 36 H 1.08995 * 109.47391 * 310.02198 * 14 12 11 37 37 H 0.96997 * 119.99901 * 359.97438 * 15 14 12 38 38 H 1.08991 * 109.47025 * 60.88020 * 18 16 15 39 39 H 1.09005 * 109.47054 * 300.87625 * 18 16 15 40 40 H 1.08010 * 119.99472 * 0.02562 * 21 20 19 41 41 H 1.07992 * 119.99858 * 180.23303 * 22 21 20 42 42 H 1.08003 * 120.00101 * 179.83349 * 23 22 21 43 43 H 1.08004 * 120.00147 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.99767 * 180.02562 * 25 24 23 45 45 H 1.08996 * 117.49588 * 359.97438 * 26 19 18 46 46 H 1.09004 * 117.50022 * 215.00047 * 26 19 18 47 47 H 1.09010 * 117.49628 * 107.48128 * 27 26 19 48 48 H 1.08998 * 117.50144 * 252.46768 * 27 26 19 49 49 H 1.09004 * 109.88232 * 59.48929 * 28 9 7 50 50 H 1.08998 * 110.01164 * 298.39371 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4736 2.0604 -1.3998 5 1 1.4598 2.6456 0.7239 6 1 3.5595 1.4334 0.6759 7 6 2.0103 -1.2021 0.0005 8 1 1.5267 -2.1046 0.3442 9 7 3.3079 -1.2437 -0.4347 10 6 3.8942 -0.3762 -1.4726 11 6 5.0983 -1.1784 -2.0262 12 6 5.6350 -1.8615 -0.7406 13 8 6.4855 -0.9753 -0.0104 14 6 6.3731 -3.1569 -1.0838 15 7 6.6578 -3.8977 0.1476 16 6 7.3063 -5.0778 0.0896 17 8 7.6538 -5.5266 -0.9822 18 6 7.5996 -5.8396 1.3564 19 6 8.3576 -7.1240 1.0151 20 6 7.5104 -8.2658 0.5155 21 6 7.9552 -9.0495 -0.5327 22 6 7.1799 -10.0993 -0.9885 23 6 5.9559 -10.3602 -0.4014 24 6 5.5086 -9.5731 0.6433 25 6 6.2857 -8.5258 1.1016 26 6 9.7646 -6.9802 0.4315 27 6 9.5798 -7.4717 1.8685 28 6 4.3469 -2.1613 0.0549 29 1 -0.4850 0.8401 -0.0004 30 1 3.1684 -0.1873 -2.2637 31 1 4.2329 0.5629 -1.0352 32 1 5.8466 -0.5127 -2.4564 33 1 4.7718 -1.9197 -2.7554 34 1 6.8149 -1.3427 0.8214 35 1 7.3092 -2.9188 -1.5892 36 1 5.7513 -3.7667 -1.7392 37 1 6.3801 -3.5386 1.0048 38 1 6.6631 -6.0915 1.8538 39 1 8.2083 -5.2234 2.0182 40 1 8.9103 -8.8438 -0.9933 41 1 7.5292 -10.7139 -1.8049 42 1 5.3489 -11.1787 -0.7593 43 1 4.5521 -9.7767 1.1017 44 1 5.9364 -7.9112 1.9180 45 1 10.1500 -5.9705 0.2902 46 1 10.0773 -7.7112 -0.3142 47 1 9.7707 -8.5262 2.0683 48 1 9.8444 -6.7856 2.6731 49 1 4.0392 -3.1934 -0.1133 50 1 4.5207 -1.9950 1.1180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699896311.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:03 Heat of formation + Delta-G solvation = -29.506025 kcal Electronic energy + Delta-G solvation = -30234.239829 eV Core-core repulsion = 26226.850961 eV Total energy + Delta-G solvation = -4007.388868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.40846 -40.60761 -39.66959 -37.81229 -36.86893 -35.26229 -34.28126 -32.17358 -31.79551 -31.39008 -30.76088 -29.49586 -27.50371 -25.12791 -24.10418 -23.82119 -22.84034 -22.70905 -21.67457 -21.33956 -20.25392 -18.99258 -18.58847 -18.12008 -17.50236 -17.18083 -16.77956 -16.56835 -16.03275 -15.90028 -15.89731 -15.63847 -15.41113 -15.20701 -14.84818 -14.79354 -14.42816 -14.29006 -14.13197 -13.87592 -13.64711 -13.50531 -13.25108 -13.13712 -12.90334 -12.80428 -12.65617 -12.36523 -12.28176 -12.11897 -11.94911 -11.92293 -11.82652 -11.58264 -11.44711 -11.04218 -10.97994 -10.78040 -10.70314 -10.09668 -9.79415 -9.42561 -8.92942 -8.25682 -5.59919 0.47155 0.52821 1.29701 1.36918 1.49533 1.73184 2.11006 2.38537 2.76751 2.95417 3.12818 3.15752 3.20091 3.59854 3.61335 3.74959 3.76858 3.78119 3.81758 3.93081 4.14169 4.20290 4.28525 4.32599 4.35314 4.40853 4.56587 4.61948 4.62639 4.70758 4.76248 4.79359 4.81656 4.85922 4.87917 4.94745 4.95022 5.06399 5.09095 5.15972 5.17451 5.22304 5.29174 5.39672 5.62234 5.65098 5.74203 5.74406 6.08068 6.15170 6.54313 6.73654 6.76274 7.30578 7.47789 8.10260 8.94538 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015570 B = 0.002509 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.882272 B =11156.988567 C =12074.112516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.021 4.021 3 Si 0.943 3.057 4 H -0.277 1.277 5 H -0.303 1.303 6 H -0.266 1.266 7 C -0.242 4.242 8 H 0.053 0.947 9 N -0.622 5.622 10 C 0.111 3.889 11 C -0.109 4.109 12 C 0.124 3.876 13 O -0.554 6.554 14 C 0.121 3.879 15 N -0.724 5.724 16 C 0.511 3.489 17 O -0.566 6.566 18 C -0.101 4.101 19 C -0.086 4.086 20 C -0.045 4.045 21 C -0.130 4.130 22 C -0.129 4.129 23 C -0.139 4.139 24 C -0.129 4.129 25 C -0.132 4.132 26 C -0.162 4.162 27 C -0.144 4.144 28 C 0.108 3.892 29 H 0.265 0.735 30 H 0.041 0.959 31 H 0.019 0.981 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.388 0.612 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.411 0.589 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.120 0.880 49 H 0.041 0.959 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.084 -17.214 3.955 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.217 4.217 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.231 1.231 6 H -0.191 1.191 7 C -0.371 4.371 8 H 0.071 0.929 9 N -0.349 5.349 10 C -0.013 4.013 11 C -0.148 4.148 12 C 0.083 3.917 13 O -0.361 6.361 14 C -0.004 4.004 15 N -0.378 5.378 16 C 0.299 3.701 17 O -0.444 6.444 18 C -0.140 4.140 19 C -0.087 4.087 20 C -0.045 4.045 21 C -0.147 4.147 22 C -0.147 4.147 23 C -0.156 4.156 24 C -0.147 4.147 25 C -0.149 4.149 26 C -0.199 4.199 27 C -0.180 4.180 28 C -0.017 4.017 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.238 0.762 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.247 0.753 38 H 0.131 0.869 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.152 0.848 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.116 0.884 48 H 0.138 0.862 49 H 0.059 0.941 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 21.992 -17.064 2.721 27.968 hybrid contribution -0.553 0.773 0.659 1.157 sum 21.439 -16.291 3.380 27.137 Atomic orbital electron populations 1.69953 1.07328 1.27547 1.54544 1.25898 0.95718 1.00800 0.99324 0.85850 0.78458 0.80412 0.78150 1.20286 1.23106 1.19065 1.18454 0.85944 0.93530 1.39192 0.92946 1.44705 1.06876 1.41493 1.41792 1.21965 0.94578 0.93824 0.90937 1.22734 0.96627 1.00176 0.95214 1.22186 0.88042 0.88602 0.92907 1.86569 1.66802 1.44120 1.38651 1.21689 1.00128 0.90837 0.87708 1.45936 1.59578 1.22083 1.10209 1.21117 0.76547 0.80508 0.91934 1.90702 1.52929 1.68408 1.32385 1.21319 1.03553 0.94340 0.94785 1.19749 0.88979 0.93638 1.06312 1.19165 0.94782 0.95045 0.95540 1.21228 1.00809 0.95856 0.96842 1.21393 0.95119 0.97869 1.00331 1.21429 0.96643 1.00583 0.96990 1.21432 1.00317 0.95615 0.97363 1.21211 0.94369 0.98506 1.00849 1.22948 0.97386 1.02601 0.96947 1.23279 0.97549 1.02924 0.94272 1.22227 0.88492 0.93995 0.96956 0.92600 0.94099 0.96291 0.88181 0.88405 0.76216 0.90252 0.91592 0.75285 0.86893 0.85380 0.85941 0.84720 0.84525 0.84600 0.84805 0.88903 0.89059 0.88396 0.86214 0.94139 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.57 13.97 21.65 0.30 -59.27 16 2 C -0.02 -1.24 5.43 84.86 0.46 -0.78 16 3 Si 0.94 47.31 24.78 68.60 1.70 49.01 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 6 H -0.27 -13.02 6.81 99.48 0.68 -12.35 16 7 C -0.24 -13.88 10.49 84.03 0.88 -13.00 16 8 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 9 N -0.62 -29.35 3.01 -691.98 -2.08 -31.43 16 10 C 0.11 4.72 4.96 86.86 0.43 5.15 16 11 C -0.11 -3.40 6.26 31.99 0.20 -3.20 16 12 C 0.12 3.50 0.93 -9.60 -0.01 3.49 16 13 O -0.55 -14.73 13.10 -148.98 -1.95 -16.69 16 14 C 0.12 2.91 4.80 86.38 0.41 3.32 16 15 N -0.72 -14.08 5.13 -463.05 -2.38 -16.46 16 16 C 0.51 10.99 7.71 87.66 0.68 11.67 16 17 O -0.57 -16.81 15.33 -3.04 -0.05 -16.86 16 18 C -0.10 -1.43 5.51 29.85 0.16 -1.27 16 19 C -0.09 -1.43 1.41 -52.91 -0.07 -1.51 16 20 C -0.05 -0.93 5.26 -19.87 -0.10 -1.03 16 21 C -0.13 -2.74 9.38 22.27 0.21 -2.53 16 22 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 23 C -0.14 -2.58 10.05 22.27 0.22 -2.35 16 24 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 25 C -0.13 -2.56 9.27 22.27 0.21 -2.36 16 26 C -0.16 -2.65 8.70 30.59 0.27 -2.38 16 27 C -0.14 -1.73 9.88 30.62 0.30 -1.42 16 28 C 0.11 3.86 5.76 86.73 0.50 4.36 16 29 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 30 H 0.04 1.84 7.98 -2.39 -0.02 1.82 16 31 H 0.02 0.86 5.41 -2.39 -0.01 0.85 16 32 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.10 2.81 7.96 -2.39 -0.02 2.79 16 34 H 0.39 6.91 8.44 -74.05 -0.62 6.29 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 1.79 8.03 -2.39 -0.02 1.78 16 37 H 0.41 6.02 7.47 -92.71 -0.69 5.33 16 38 H 0.11 1.35 6.51 -2.39 -0.02 1.34 16 39 H 0.13 1.04 7.95 -2.38 -0.02 1.02 16 40 H 0.12 2.43 5.99 -2.91 -0.02 2.41 16 41 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 44 H 0.13 2.09 6.78 -2.91 -0.02 2.07 16 45 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.09 1.57 6.14 -2.39 -0.01 1.56 16 47 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 48 H 0.12 0.93 8.09 -2.39 -0.02 0.92 16 49 H 0.04 1.45 7.82 -2.38 -0.02 1.43 16 50 H 0.04 1.44 8.07 -2.39 -0.02 1.42 16 Total: -1.00 -77.47 397.99 0.36 -77.11 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.38 Total: 22.93 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.20 Total: -8.35 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -4.16 Total: -107.16 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -2.00 Total: -33.54 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.70 Total: 49.01 kcal Total: -77.47 0.36 -77.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699896311.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.604 kcal (2) G-P(sol) polarization free energy of solvation -77.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds