Wall clock time and date at job start Wed Apr 1 2020 02:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00123 * 2 1 4 4 H 1.48498 * 109.46880 * 270.00103 * 3 2 1 5 5 H 1.48499 * 109.47012 * 29.99629 * 3 2 1 6 6 H 1.48500 * 109.47287 * 150.00026 * 3 2 1 7 7 C 1.38814 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99940 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99727 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46882 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.55480 * 59.87382 * 11 10 9 13 13 C 1.53297 * 109.51074 * 180.02562 * 11 10 9 14 14 N 1.47149 * 108.38497 * 172.22405 * 13 11 10 15 15 C 1.34785 * 120.98055 * 129.48191 * 14 13 11 16 16 O 1.21271 * 120.00005 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99710 * 180.02562 * 15 14 13 18 18 C 1.53001 * 109.46847 * 175.20828 * 17 15 14 19 19 C 1.50693 * 115.55140 * 295.01681 * 18 17 15 20 20 C 1.38235 * 120.00259 * 113.93634 * 19 18 17 21 21 C 1.38235 * 120.00337 * 179.78747 * 20 19 18 22 22 C 1.38232 * 119.99678 * 0.46072 * 21 20 19 23 23 C 1.38237 * 120.00171 * 359.77299 * 22 21 20 24 24 C 1.38234 * 119.99993 * 0.02562 * 23 22 21 25 25 C 1.52997 * 117.49547 * 149.34234 * 18 17 15 26 26 C 1.53007 * 117.49494 * 80.68504 * 18 17 15 27 27 C 1.47153 * 118.03945 * 309.46570 * 14 13 11 28 28 C 1.53298 * 108.38121 * 50.52830 * 27 14 13 29 29 O 1.42959 * 109.22754 * 307.70169 * 28 27 14 30 30 H 0.96993 * 120.00214 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00320 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46925 * 60.00404 * 10 9 7 33 33 H 1.08996 * 109.47126 * 300.00256 * 10 9 7 34 34 H 1.09006 * 109.68214 * 291.94763 * 13 11 10 35 35 H 1.09005 * 109.68347 * 52.46153 * 13 11 10 36 36 H 1.08996 * 109.46965 * 295.21008 * 17 15 14 37 37 H 1.08995 * 109.47084 * 55.21105 * 17 15 14 38 38 H 1.08002 * 119.99795 * 359.97438 * 20 19 18 39 39 H 1.07997 * 119.99992 * 180.24972 * 21 20 19 40 40 H 1.07998 * 120.00339 * 179.79027 * 22 21 20 41 41 H 1.07998 * 120.00039 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.00030 * 179.97438 * 24 23 22 43 43 H 1.09007 * 117.50200 * 0.02562 * 25 18 17 44 44 H 1.09004 * 117.49645 * 145.02050 * 25 18 17 45 45 H 1.08999 * 117.49767 * 214.97380 * 26 18 17 46 46 H 1.09005 * 117.50024 * 359.97438 * 26 18 17 47 47 H 1.08993 * 109.68695 * 170.25381 * 27 14 13 48 48 H 1.09003 * 109.67556 * 290.77747 * 27 14 13 49 49 H 1.08997 * 109.50924 * 67.63084 * 28 27 14 50 50 H 1.09001 * 109.50769 * 187.77243 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.4353 -4.7618 -0.8887 13 6 1.8294 -6.1478 0.0005 14 7 0.8624 -7.2408 0.1888 15 6 0.8497 -8.3059 -0.6371 16 8 1.6434 -8.3737 -1.5515 17 6 -0.1509 -9.4126 -0.4241 18 6 -0.0323 -10.4325 -1.5584 19 6 -0.3957 -9.9246 -2.9298 20 6 0.5740 -9.8263 -3.9100 21 6 0.2397 -9.3646 -5.1693 22 6 -1.0625 -8.9921 -5.4457 23 6 -2.0313 -9.0858 -4.4641 24 6 -1.6978 -9.5515 -3.2060 25 6 -0.3629 -11.8908 -1.2346 26 6 1.0904 -11.4677 -1.4631 27 6 -0.0901 -7.1370 1.3057 28 6 -0.7621 -5.7606 1.2415 29 8 0.2446 -4.7481 1.1693 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 2.6847 -3.7145 0.8906 33 1 2.6848 -3.7145 -0.8894 34 1 2.3458 -6.2744 -0.9511 35 1 2.5540 -6.1536 0.8149 36 1 0.0479 -9.9037 0.5284 37 1 -1.1577 -8.9952 -0.4146 38 1 1.5924 -10.1132 -3.6928 39 1 0.9966 -9.2916 -5.9363 40 1 -1.3231 -8.6281 -6.4285 41 1 -3.0488 -8.7951 -4.6801 42 1 -2.4547 -9.6243 -2.4390 43 1 -0.6653 -12.1236 -0.2135 44 1 -0.8430 -12.4830 -2.0136 45 1 1.5657 -11.7817 -2.3924 46 1 1.7447 -11.4219 -0.5924 47 1 -0.8449 -7.9184 1.2184 48 1 0.4406 -7.2432 2.2518 49 1 -1.3970 -5.7064 0.3572 50 1 -1.3675 -5.6091 2.1351 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700152535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:39 Heat of formation + Delta-G solvation = -6.503254 kcal Electronic energy + Delta-G solvation = -30358.441693 eV Core-core repulsion = 26352.050300 eV Total energy + Delta-G solvation = -4006.391393 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.69024 -39.63841 -38.25748 -37.05397 -35.01452 -34.33700 -32.27940 -31.08302 -30.69372 -30.42127 -29.66386 -27.82477 -25.45235 -23.49333 -23.41725 -23.23326 -22.40766 -21.94916 -20.90406 -20.00266 -18.89409 -17.39844 -17.23613 -16.97985 -16.43375 -15.96942 -15.76424 -15.32186 -15.05878 -14.93635 -14.79183 -14.63145 -14.33950 -14.04964 -13.68644 -13.52803 -13.40205 -13.13056 -12.80476 -12.64581 -12.54301 -12.50602 -12.21458 -12.03479 -11.77252 -11.56297 -11.27739 -11.17716 -10.98973 -10.87848 -10.77240 -10.72263 -10.43190 -10.25331 -10.05364 -9.86583 -9.74659 -9.60827 -8.96848 -8.84225 -8.75249 -8.48458 -6.86514 -5.70489 -2.99030 1.25815 1.35974 2.57886 2.76842 3.44918 3.47444 3.52107 3.54141 3.72762 3.95981 4.26305 4.35843 4.41835 4.56817 4.60769 4.75297 4.82197 4.88424 4.92468 4.94450 5.04988 5.08750 5.15316 5.18691 5.26159 5.33411 5.33639 5.39004 5.53620 5.54610 5.58700 5.62204 5.68004 5.68558 5.72248 5.83691 5.90953 5.94153 5.98210 5.99107 6.29757 6.36084 6.39551 6.45677 6.56416 6.58423 6.72006 6.93001 7.29714 7.48085 7.74072 8.12049 8.47704 9.59391 10.16841 10.53032 11.52388 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.002487 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.436098 B =11255.765179 C =12154.709934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.074 3.926 12 H 0.062 0.938 13 C 0.087 3.913 14 N -0.617 5.617 15 C 0.516 3.484 16 O -0.525 6.525 17 C -0.099 4.099 18 C -0.071 4.071 19 C -0.043 4.043 20 C -0.085 4.085 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.115 4.115 25 C -0.166 4.166 26 C -0.157 4.157 27 C 0.072 3.928 28 C 0.045 3.955 29 O -0.357 6.357 30 H 0.254 0.746 31 H 0.388 0.612 32 H 0.028 0.972 33 H 0.035 0.965 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.078 0.922 49 H 0.053 0.947 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.443 -27.712 -2.422 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.080 0.920 13 C -0.036 4.036 14 N -0.352 5.352 15 C 0.304 3.696 16 O -0.400 6.400 17 C -0.139 4.139 18 C -0.071 4.071 19 C -0.043 4.043 20 C -0.103 4.103 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.133 4.133 25 C -0.203 4.203 26 C -0.194 4.194 27 C -0.052 4.052 28 C -0.033 4.033 29 O -0.274 6.274 30 H 0.064 0.936 31 H 0.222 0.778 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.107 0.893 48 H 0.096 0.904 49 H 0.071 0.929 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.847 -27.491 -2.770 27.897 hybrid contribution -0.014 0.880 -0.047 0.882 sum -3.861 -26.610 -2.817 27.036 Atomic orbital electron populations 1.69674 1.05111 1.25532 1.57749 1.24741 0.95524 0.97653 1.03090 0.86179 0.78640 0.83841 0.77472 1.21761 1.21790 1.20761 1.19233 0.91011 0.84109 1.42630 0.91162 1.42213 1.06058 0.99451 1.89303 1.20622 0.92377 0.84741 0.98720 1.22788 0.92975 0.94328 0.88362 0.92035 1.22295 0.91588 0.85685 1.04018 1.48190 1.35588 1.21009 1.30411 1.20510 0.85061 0.82526 0.81496 1.90690 1.40463 1.78163 1.30701 1.21226 0.99688 0.94574 0.98417 1.19658 1.05295 0.89572 0.92617 1.18861 0.93193 0.99366 0.92832 1.21003 0.99049 0.97970 0.92305 1.21156 0.96421 0.99617 0.96996 1.21144 0.93479 1.00113 0.99329 1.21077 0.99406 1.00260 0.93499 1.20917 0.95754 0.99761 0.96872 1.23150 0.99083 0.95342 1.02690 1.22986 0.91191 1.01663 1.03518 1.22507 0.92928 0.99581 0.90147 1.22908 0.90919 0.86710 1.02751 1.88166 1.46188 1.50532 1.42559 0.93581 0.77837 0.95398 0.94752 0.88140 0.90632 0.88516 0.88591 0.85919 0.86249 0.86332 0.86234 0.86429 0.88440 0.88479 0.88454 0.88658 0.89261 0.90407 0.92900 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.95 13.06 55.49 0.72 -28.23 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.54 16 9 N -0.73 -19.29 5.50 -59.90 -0.33 -19.62 16 10 C 0.16 3.45 5.95 -4.04 -0.02 3.42 16 11 C 0.07 1.31 2.86 -26.58 -0.08 1.23 16 12 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 13 C 0.09 1.28 5.93 -3.53 -0.02 1.26 16 14 N -0.62 -7.76 3.02 -172.27 -0.52 -8.28 16 15 C 0.52 6.51 7.54 -10.98 -0.08 6.43 16 16 O -0.52 -8.24 14.08 5.56 0.08 -8.16 16 17 C -0.10 -0.87 3.97 -27.88 -0.11 -0.98 16 18 C -0.07 -0.65 1.20 -155.66 -0.19 -0.84 16 19 C -0.04 -0.47 4.42 -104.63 -0.46 -0.93 16 20 C -0.09 -1.00 8.29 -39.58 -0.33 -1.33 16 21 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 22 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 23 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 24 C -0.12 -1.19 9.66 -39.58 -0.38 -1.57 16 25 C -0.17 -1.16 9.93 -26.69 -0.26 -1.43 16 26 C -0.16 -1.33 9.37 -26.69 -0.25 -1.58 16 27 C 0.07 0.71 6.55 -3.53 -0.02 0.68 16 28 C 0.05 0.56 6.98 37.31 0.26 0.82 16 29 O -0.36 -6.32 10.14 -35.23 -0.36 -6.67 16 30 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.39 10.95 7.55 -40.82 -0.31 10.64 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 1.56 7.08 -51.93 -0.37 1.19 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.10 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.10 0.72 7.41 -51.93 -0.38 0.34 16 38 H 0.12 1.45 7.05 -52.49 -0.37 1.08 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.84 7.17 -51.93 -0.37 0.47 16 46 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.09 0.59 5.99 -51.93 -0.31 0.28 16 48 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 405.09 15.07 6.10 6.10 Total: -1.00 -34.99 405.09 -10.71 -45.70 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -8.00 Total: 8.79 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -3.39 Total: -7.51 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.12 Total: -56.13 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.28 Total: -14.84 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.99 -10.71 -45.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700152535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.200 kcal (2) G-P(sol) polarization free energy of solvation -34.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds