Wall clock time and date at job start Wed Apr 1 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99951 * 2 1 4 4 H 1.48501 * 109.46969 * 269.99673 * 3 2 1 5 5 H 1.48491 * 109.47258 * 29.99512 * 3 2 1 6 6 H 1.48507 * 109.47092 * 149.99841 * 3 2 1 7 7 C 1.38810 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00214 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00294 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00273 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46994 * 179.97438 * 10 9 7 12 12 H 1.08990 * 109.55688 * 59.87399 * 11 10 9 13 13 C 1.53299 * 109.51231 * 180.02562 * 11 10 9 14 14 N 1.47147 * 108.38568 * 172.22332 * 13 11 10 15 15 C 1.34779 * 120.98172 * 129.48393 * 14 13 11 16 16 O 1.21559 * 119.99890 * 354.25358 * 15 14 13 17 17 C 1.47841 * 119.99957 * 174.25000 * 15 14 13 18 18 C 1.39597 * 120.14905 * 306.09753 * 17 15 14 19 19 C 1.37935 * 119.85652 * 179.97438 * 18 17 15 20 20 C 1.38375 * 120.14316 * 0.02562 * 19 18 17 21 21 C 1.38332 * 120.29751 * 359.97438 * 20 19 18 22 22 C 1.37983 * 120.14193 * 359.73401 * 21 20 19 23 23 C 1.50701 * 120.07448 * 180.25774 * 22 21 20 24 24 C 1.53786 * 113.61584 * 43.02672 * 23 22 21 25 25 C 1.53954 * 87.02021 * 220.04807 * 24 23 22 26 26 C 1.53784 * 87.11445 * 25.35950 * 25 24 23 27 27 C 1.47150 * 118.03663 * 309.46607 * 14 13 11 28 28 C 1.53289 * 108.38810 * 50.53403 * 27 14 13 29 29 O 1.42963 * 109.51206 * 299.74519 * 11 10 9 30 30 H 0.96994 * 120.00089 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99219 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47015 * 59.99807 * 10 9 7 33 33 H 1.09002 * 109.47221 * 300.00359 * 10 9 7 34 34 H 1.08999 * 109.68291 * 52.50145 * 13 11 10 35 35 H 1.08998 * 109.67862 * 291.94807 * 13 11 10 36 36 H 1.07998 * 120.06899 * 359.95084 * 18 17 15 37 37 H 1.07997 * 119.92923 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.85146 * 179.97438 * 20 19 18 39 39 H 1.08000 * 119.93107 * 179.97438 * 21 20 19 40 40 H 1.09003 * 112.84883 * 174.22472 * 23 22 21 41 41 H 1.08994 * 113.61050 * 334.56970 * 24 23 22 42 42 H 1.09002 * 113.60975 * 105.47092 * 24 23 22 43 43 H 1.08996 * 113.53600 * 270.81465 * 25 24 23 44 44 H 1.08998 * 113.74345 * 139.94386 * 25 24 23 45 45 H 1.08991 * 113.62204 * 220.08947 * 26 25 24 46 46 H 1.09008 * 113.68809 * 89.19305 * 26 25 24 47 47 H 1.09008 * 109.67827 * 170.26022 * 27 14 13 48 48 H 1.08997 * 109.68049 * 290.76994 * 27 14 13 49 49 H 1.09000 * 109.51128 * 67.61924 * 28 27 14 50 50 H 1.09002 * 109.51842 * 187.77647 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.4347 -4.7622 -0.8869 13 6 1.8294 -6.1479 0.0018 14 7 0.8625 -7.2407 0.1914 15 6 0.8491 -8.3062 -0.6340 16 8 1.5712 -8.3268 -1.6116 17 6 -0.0437 -9.4499 -0.3502 18 6 -0.0025 -10.0794 0.8951 19 6 -0.8386 -11.1456 1.1535 20 6 -1.7164 -11.5918 0.1814 21 6 -1.7624 -10.9725 -1.0547 22 6 -0.9357 -9.9011 -1.3241 23 6 -0.9911 -9.2240 -2.6692 24 6 -2.4214 -9.0012 -3.1883 25 6 -1.8915 -9.3931 -4.5797 26 6 -0.7932 -10.1865 -3.8522 27 6 -0.0891 -7.1363 1.3089 28 6 -0.7612 -5.7601 1.2446 29 8 0.2459 -4.7479 1.1715 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6848 -3.7145 0.8905 33 1 2.6848 -3.7145 -0.8894 34 1 2.5541 -6.1535 0.8160 35 1 2.3450 -6.2748 -0.9501 36 1 0.6828 -9.7326 1.6543 37 1 -0.8074 -11.6337 2.1164 38 1 -2.3687 -12.4273 0.3887 39 1 -2.4495 -11.3259 -1.8092 40 1 -0.3641 -8.3338 -2.7211 41 1 -3.1476 -9.7059 -2.7833 42 1 -2.7533 -7.9650 -3.1225 43 1 -1.5117 -8.5485 -5.1545 44 1 -2.5774 -10.0193 -5.1502 45 1 0.1873 -10.1060 -4.3213 46 1 -1.0721 -11.2163 -3.6284 47 1 -0.8440 -7.9179 1.2225 48 1 0.4423 -7.2421 2.2546 49 1 -1.3968 -5.7062 0.3608 50 1 -1.3659 -5.6080 2.1387 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700168903.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:57 Heat of formation + Delta-G solvation = -12.963158 kcal Electronic energy + Delta-G solvation = -30611.821546 eV Core-core repulsion = 26605.150030 eV Total energy + Delta-G solvation = -4006.671515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.06633 -39.66867 -38.23883 -37.81557 -35.05582 -34.37718 -32.38109 -31.61533 -31.36666 -30.10113 -28.12265 -26.16818 -25.82191 -25.44726 -23.91362 -23.44996 -22.46645 -21.89269 -20.83625 -19.57163 -19.38935 -17.78815 -17.10245 -16.86140 -16.47204 -16.08694 -16.04913 -15.40213 -15.10780 -14.90573 -14.83332 -14.53663 -14.34381 -14.13277 -13.77508 -13.57387 -13.19290 -13.11429 -12.92054 -12.70734 -12.65755 -12.48785 -12.29585 -12.01250 -11.95244 -11.77571 -11.58055 -10.99250 -10.88549 -10.86019 -10.77512 -10.67227 -10.48096 -10.41895 -10.07796 -9.91150 -9.87662 -9.66094 -9.22541 -8.99700 -8.84629 -8.54399 -6.87009 -5.70837 -2.99468 0.71393 0.99392 2.49268 2.75297 3.37356 3.47254 3.51980 3.53987 3.96010 4.19245 4.32232 4.33815 4.51150 4.59846 4.60391 4.66820 4.74830 4.75940 4.81660 4.91550 5.02933 5.08882 5.11822 5.13897 5.30950 5.40121 5.44713 5.46955 5.52635 5.55227 5.61752 5.65894 5.67044 5.70742 5.72452 5.80691 5.86000 5.88874 5.95448 5.98603 6.09975 6.14383 6.28290 6.31806 6.36530 6.54623 6.57322 6.70814 7.19571 7.46986 7.73756 7.96603 8.47316 9.59038 10.16341 10.52432 11.51984 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.002515 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.983347 B =11131.429519 C =11917.576849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.074 3.926 12 H 0.063 0.937 13 C 0.085 3.915 14 N -0.607 5.607 15 C 0.563 3.437 16 O -0.529 6.529 17 C -0.122 4.122 18 C -0.087 4.087 19 C -0.129 4.129 20 C -0.099 4.099 21 C -0.122 4.122 22 C -0.021 4.021 23 C -0.084 4.084 24 C -0.134 4.134 25 C -0.141 4.141 26 C -0.126 4.126 27 C 0.071 3.929 28 C 0.047 3.953 29 O -0.356 6.356 30 H 0.254 0.746 31 H 0.388 0.612 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.078 0.922 49 H 0.053 0.947 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.406 -27.702 -0.183 28.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.081 0.919 13 C -0.038 4.038 14 N -0.340 5.340 15 C 0.351 3.649 16 O -0.406 6.406 17 C -0.125 4.125 18 C -0.105 4.105 19 C -0.147 4.147 20 C -0.117 4.117 21 C -0.140 4.140 22 C -0.022 4.022 23 C -0.102 4.102 24 C -0.172 4.172 25 C -0.179 4.179 26 C -0.163 4.163 27 C -0.053 4.053 28 C -0.032 4.032 29 O -0.274 6.274 30 H 0.064 0.936 31 H 0.222 0.778 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.111 0.889 48 H 0.097 0.903 49 H 0.071 0.929 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.845 -27.432 -0.559 28.053 hybrid contribution 0.085 0.666 0.056 0.673 sum -5.760 -26.766 -0.503 27.383 Atomic orbital electron populations 1.69675 1.05106 1.25537 1.57719 1.24741 0.95523 0.97654 1.03074 0.86180 0.78639 0.83842 0.77470 1.21760 1.21795 1.20762 1.19228 0.91010 0.84095 1.42664 0.91157 1.42211 1.06065 0.99437 1.89311 1.20623 0.92350 0.84713 0.98774 1.22786 0.93021 0.94176 0.88468 0.91928 1.22388 0.91514 0.85625 1.04268 1.48110 1.35300 1.20447 1.30180 1.18372 0.82347 0.82010 0.82130 1.90792 1.42439 1.80219 1.27183 1.19779 0.99217 0.98237 0.95276 1.21260 0.98412 0.95805 0.95036 1.21073 0.96654 0.97165 0.99807 1.21293 0.97991 0.99196 0.93229 1.20947 0.99690 0.95939 0.97375 1.19773 0.93517 0.94540 0.94358 1.21737 0.98401 0.99812 0.90239 1.23078 0.95513 1.02178 0.96404 1.22850 0.98336 1.00394 0.96304 1.22917 0.99724 0.97929 0.95723 1.22609 0.93064 0.99821 0.89756 1.22912 0.90884 0.86523 1.02838 1.88169 1.46202 1.50590 1.42428 0.93579 0.77825 0.95369 0.94684 0.90244 0.87936 0.85466 0.85436 0.85639 0.85419 0.87586 0.89858 0.91094 0.89934 0.91318 0.90979 0.90091 0.88887 0.90349 0.92861 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -19.14 5.50 -59.91 -0.33 -19.47 16 10 C 0.16 3.40 5.95 -4.04 -0.02 3.38 16 11 C 0.07 1.29 2.86 -26.58 -0.08 1.22 16 12 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 13 C 0.08 1.24 5.94 -3.53 -0.02 1.22 16 14 N -0.61 -8.00 3.02 -173.39 -0.52 -8.53 16 15 C 0.56 7.85 6.26 -12.33 -0.08 7.77 16 16 O -0.53 -9.00 15.03 5.31 0.08 -8.92 16 17 C -0.12 -1.39 4.59 -104.97 -0.48 -1.87 16 18 C -0.09 -0.78 7.87 -39.19 -0.31 -1.09 16 19 C -0.13 -0.94 10.03 -39.64 -0.40 -1.34 16 20 C -0.10 -0.69 10.04 -39.50 -0.40 -1.09 16 21 C -0.12 -0.99 8.43 -39.64 -0.33 -1.33 16 22 C -0.02 -0.22 5.32 -104.22 -0.55 -0.78 16 23 C -0.08 -0.91 3.54 -90.95 -0.32 -1.23 16 24 C -0.13 -1.19 7.48 -25.83 -0.19 -1.38 16 25 C -0.14 -1.18 8.09 -25.83 -0.21 -1.39 16 26 C -0.13 -1.17 7.53 -25.91 -0.20 -1.37 16 27 C 0.07 0.76 5.72 -3.54 -0.02 0.74 16 28 C 0.05 0.60 6.99 37.31 0.26 0.86 16 29 O -0.36 -6.31 10.14 -35.23 -0.36 -6.67 16 30 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.39 10.88 7.55 -40.82 -0.31 10.57 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.10 1.56 7.06 -51.93 -0.37 1.19 16 36 H 0.13 1.02 7.77 -52.49 -0.41 0.61 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.13 0.82 6.74 -52.49 -0.35 0.46 16 40 H 0.11 1.45 5.96 -51.93 -0.31 1.14 16 41 H 0.08 0.62 6.61 -51.93 -0.34 0.27 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.65 7.35 -51.92 -0.38 0.27 16 47 H 0.09 0.85 5.61 -51.92 -0.29 0.56 16 48 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 396.24 15.07 5.97 5.97 Total: -1.00 -34.25 396.24 -10.86 -45.11 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -7.80 Total: 8.02 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -3.60 Total: -5.19 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.13 Total: -56.11 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.28 Total: -15.59 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.25 -10.86 -45.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700168903.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.149 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds