Wall clock time and date at job start Wed Apr 1 2020 02:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99951 * 2 1 4 4 H 1.48501 * 109.46969 * 269.99673 * 3 2 1 5 5 H 1.48491 * 109.47258 * 29.99512 * 3 2 1 6 6 H 1.48507 * 109.47092 * 149.99841 * 3 2 1 7 7 C 1.38810 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00214 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00294 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00273 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46994 * 179.97438 * 10 9 7 12 12 H 1.08990 * 109.55688 * 59.87399 * 11 10 9 13 13 C 1.53299 * 109.51231 * 180.02562 * 11 10 9 14 14 N 1.47147 * 108.38568 * 172.22332 * 13 11 10 15 15 C 1.34779 * 120.98172 * 129.48393 * 14 13 11 16 16 O 1.21559 * 119.99890 * 354.25358 * 15 14 13 17 17 C 1.47841 * 119.99957 * 174.25000 * 15 14 13 18 18 C 1.39597 * 120.14905 * 306.09753 * 17 15 14 19 19 C 1.37935 * 119.85652 * 179.97438 * 18 17 15 20 20 C 1.38375 * 120.14316 * 0.02562 * 19 18 17 21 21 C 1.38332 * 120.29751 * 359.97438 * 20 19 18 22 22 C 1.37983 * 120.14193 * 359.73401 * 21 20 19 23 23 C 1.50701 * 120.07448 * 180.25774 * 22 21 20 24 24 C 1.53786 * 113.61584 * 43.02672 * 23 22 21 25 25 C 1.53954 * 87.02021 * 220.04807 * 24 23 22 26 26 C 1.53784 * 87.11445 * 25.35950 * 25 24 23 27 27 C 1.47150 * 118.03663 * 309.46607 * 14 13 11 28 28 C 1.53289 * 108.38810 * 50.53403 * 27 14 13 29 29 O 1.42963 * 109.51206 * 299.74519 * 11 10 9 30 30 H 0.96994 * 120.00089 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99219 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47015 * 59.99807 * 10 9 7 33 33 H 1.09002 * 109.47221 * 300.00359 * 10 9 7 34 34 H 1.08999 * 109.68291 * 52.50145 * 13 11 10 35 35 H 1.08998 * 109.67862 * 291.94807 * 13 11 10 36 36 H 1.07998 * 120.06899 * 359.95084 * 18 17 15 37 37 H 1.07997 * 119.92923 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.85146 * 179.97438 * 20 19 18 39 39 H 1.08000 * 119.93107 * 179.97438 * 21 20 19 40 40 H 1.09003 * 112.84883 * 174.22472 * 23 22 21 41 41 H 1.08994 * 113.61050 * 334.56970 * 24 23 22 42 42 H 1.09002 * 113.60975 * 105.47092 * 24 23 22 43 43 H 1.08996 * 113.53600 * 270.81465 * 25 24 23 44 44 H 1.08998 * 113.74345 * 139.94386 * 25 24 23 45 45 H 1.08991 * 113.62204 * 220.08947 * 26 25 24 46 46 H 1.09008 * 113.68809 * 89.19305 * 26 25 24 47 47 H 1.09008 * 109.67827 * 170.26022 * 27 14 13 48 48 H 1.08997 * 109.68049 * 290.76994 * 27 14 13 49 49 H 1.09000 * 109.51128 * 67.61924 * 28 27 14 50 50 H 1.09002 * 109.51842 * 187.77647 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.4347 -4.7622 -0.8869 13 6 1.8294 -6.1479 0.0018 14 7 0.8625 -7.2407 0.1914 15 6 0.8491 -8.3062 -0.6340 16 8 1.5712 -8.3268 -1.6116 17 6 -0.0437 -9.4499 -0.3502 18 6 -0.0025 -10.0794 0.8951 19 6 -0.8386 -11.1456 1.1535 20 6 -1.7164 -11.5918 0.1814 21 6 -1.7624 -10.9725 -1.0547 22 6 -0.9357 -9.9011 -1.3241 23 6 -0.9911 -9.2240 -2.6692 24 6 -2.4214 -9.0012 -3.1883 25 6 -1.8915 -9.3931 -4.5797 26 6 -0.7932 -10.1865 -3.8522 27 6 -0.0891 -7.1363 1.3089 28 6 -0.7612 -5.7601 1.2446 29 8 0.2459 -4.7479 1.1715 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6848 -3.7145 0.8905 33 1 2.6848 -3.7145 -0.8894 34 1 2.5541 -6.1535 0.8160 35 1 2.3450 -6.2748 -0.9501 36 1 0.6828 -9.7326 1.6543 37 1 -0.8074 -11.6337 2.1164 38 1 -2.3687 -12.4273 0.3887 39 1 -2.4495 -11.3259 -1.8092 40 1 -0.3641 -8.3338 -2.7211 41 1 -3.1476 -9.7059 -2.7833 42 1 -2.7533 -7.9650 -3.1225 43 1 -1.5117 -8.5485 -5.1545 44 1 -2.5774 -10.0193 -5.1502 45 1 0.1873 -10.1060 -4.3213 46 1 -1.0721 -11.2163 -3.6284 47 1 -0.8440 -7.9179 1.2225 48 1 0.4423 -7.2421 2.2546 49 1 -1.3968 -5.7062 0.3608 50 1 -1.3659 -5.6080 2.1387 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700168903.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:56 Heat of formation + Delta-G solvation = -34.073202 kcal Electronic energy + Delta-G solvation = -30612.736946 eV Core-core repulsion = 26605.150030 eV Total energy + Delta-G solvation = -4007.586915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.98269 -40.63966 -39.35518 -38.56755 -36.69268 -35.80684 -34.00330 -32.56676 -32.11734 -31.62328 -29.37207 -27.52049 -26.54671 -26.42603 -25.08449 -24.77386 -23.65470 -22.83461 -22.20951 -20.52277 -20.11881 -19.26531 -18.64753 -17.92552 -17.52500 -17.17443 -16.90970 -16.69008 -16.39757 -16.01372 -15.89016 -15.71732 -15.26129 -15.19279 -15.04851 -14.81842 -14.46988 -14.31329 -14.12798 -13.99574 -13.59324 -13.46086 -13.39059 -13.09671 -12.82478 -12.76564 -12.68350 -12.63541 -12.40204 -12.28037 -12.07564 -11.90345 -11.71775 -11.55425 -11.40760 -11.23367 -11.13525 -10.97262 -10.95146 -9.91289 -9.70625 -9.62094 -9.02590 -7.94878 -5.24859 0.01770 0.37909 1.46333 1.48037 1.49587 1.58064 1.75085 2.55559 2.69131 2.72749 3.30526 3.38692 3.51415 3.59595 3.64045 3.79541 3.84812 3.89689 3.97437 4.00566 4.02026 4.09207 4.13125 4.19243 4.28279 4.39149 4.41830 4.44353 4.52198 4.59326 4.67891 4.74581 4.76939 4.78828 4.80295 4.87066 4.90915 5.00366 5.04211 5.04555 5.07916 5.15399 5.21700 5.38830 5.46949 5.47631 5.52133 5.62519 5.96361 6.16207 6.18192 6.26425 6.91376 7.32361 8.05606 8.30953 9.28898 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.002515 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.983347 B =11131.429519 C =11917.576849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.740 5.740 10 C 0.161 3.839 11 C 0.089 3.911 12 H 0.043 0.957 13 C 0.095 3.905 14 N -0.608 5.608 15 C 0.561 3.439 16 O -0.572 6.572 17 C -0.148 4.148 18 C -0.090 4.090 19 C -0.124 4.124 20 C -0.089 4.089 21 C -0.123 4.123 22 C -0.036 4.036 23 C -0.094 4.094 24 C -0.127 4.127 25 C -0.137 4.137 26 C -0.123 4.123 27 C 0.078 3.922 28 C 0.040 3.960 29 O -0.384 6.384 30 H 0.252 0.748 31 H 0.375 0.625 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.136 0.864 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.148 0.852 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.053 0.947 46 H 0.100 0.900 47 H 0.115 0.885 48 H 0.098 0.902 49 H 0.044 0.956 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 -30.348 1.285 31.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.380 4.380 8 H 0.096 0.904 9 N -0.383 5.383 10 C 0.034 3.966 11 C 0.030 3.970 12 H 0.061 0.939 13 C -0.029 4.029 14 N -0.341 5.341 15 C 0.352 3.648 16 O -0.452 6.452 17 C -0.151 4.151 18 C -0.108 4.108 19 C -0.142 4.142 20 C -0.107 4.107 21 C -0.141 4.141 22 C -0.037 4.037 23 C -0.112 4.112 24 C -0.164 4.164 25 C -0.174 4.174 26 C -0.160 4.160 27 C -0.044 4.044 28 C -0.037 4.037 29 O -0.303 6.303 30 H 0.060 0.940 31 H 0.207 0.793 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.153 0.847 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.166 0.834 40 H 0.084 0.916 41 H 0.124 0.876 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.119 0.881 47 H 0.133 0.867 48 H 0.116 0.884 49 H 0.063 0.937 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.707 -30.112 0.927 30.864 hybrid contribution 0.331 1.386 -0.379 1.475 sum -6.377 -28.726 0.547 29.431 Atomic orbital electron populations 1.69844 1.06735 1.26105 1.59324 1.25635 0.96462 1.01275 1.03515 0.85076 0.77688 0.79112 0.77473 1.21314 1.22028 1.19279 1.19670 0.91594 0.85194 1.41521 0.90382 1.42401 1.05699 1.00812 1.89374 1.20760 0.92985 0.83893 0.98943 1.22441 0.92359 0.94256 0.87959 0.93867 1.22131 0.91642 0.84836 1.04262 1.48185 1.35306 1.19776 1.30786 1.18913 0.82055 0.82647 0.81220 1.90756 1.44297 1.81204 1.28939 1.19695 1.00111 0.98270 0.97058 1.21411 0.98990 0.96296 0.94108 1.21439 0.95526 0.96123 1.01109 1.21720 0.97528 0.99230 0.92250 1.21185 0.99293 0.94978 0.98606 1.19860 0.94458 0.95648 0.93765 1.21649 0.99020 0.98895 0.91663 1.23086 0.94789 1.02091 0.96449 1.22823 0.98249 1.00122 0.96240 1.22937 0.99165 0.98779 0.95118 1.22707 0.93161 0.98905 0.89584 1.23198 0.90148 0.86724 1.03657 1.88105 1.47287 1.52821 1.42042 0.93975 0.79310 0.94904 0.94023 0.88919 0.89029 0.84656 0.82518 0.82375 0.83430 0.91609 0.87578 0.92310 0.91204 0.89118 0.92845 0.88135 0.86708 0.88392 0.93726 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.39 13.06 21.65 0.28 -61.11 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.74 -40.18 5.50 -343.45 -1.89 -42.07 16 10 C 0.16 6.89 5.95 86.38 0.51 7.41 16 11 C 0.09 3.22 2.86 30.69 0.09 3.31 16 12 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 13 C 0.09 2.86 5.94 86.36 0.51 3.37 16 14 N -0.61 -16.22 3.02 -820.77 -2.48 -18.70 16 15 C 0.56 16.17 6.26 86.78 0.54 16.72 16 16 O -0.57 -20.81 15.03 -3.90 -0.06 -20.86 16 17 C -0.15 -3.29 4.59 -20.09 -0.09 -3.38 16 18 C -0.09 -1.41 7.87 22.53 0.18 -1.23 16 19 C -0.12 -1.31 10.03 22.23 0.22 -1.08 16 20 C -0.09 -0.86 10.04 22.32 0.22 -0.64 16 21 C -0.12 -1.63 8.43 22.23 0.19 -1.44 16 22 C -0.04 -0.73 5.32 -19.61 -0.10 -0.84 16 23 C -0.09 -2.09 3.54 -11.01 -0.04 -2.13 16 24 C -0.13 -2.18 7.48 31.18 0.23 -1.95 16 25 C -0.14 -2.24 8.09 31.18 0.25 -1.99 16 26 C -0.12 -2.29 7.53 31.12 0.23 -2.06 16 27 C 0.08 1.60 5.72 86.35 0.49 2.09 16 28 C 0.04 1.02 6.99 72.08 0.50 1.52 16 29 O -0.38 -13.84 10.14 -148.98 -1.51 -15.35 16 30 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.38 21.91 7.55 -92.71 -0.70 21.21 16 32 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.09 2.96 7.06 -2.39 -0.02 2.95 16 36 H 0.14 1.83 7.77 -2.91 -0.02 1.80 16 37 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 38 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 39 H 0.15 1.31 6.74 -2.91 -0.02 1.29 16 40 H 0.07 1.99 5.96 -2.39 -0.01 1.98 16 41 H 0.11 1.32 6.61 -2.39 -0.02 1.30 16 42 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.10 1.45 7.35 -2.38 -0.02 1.43 16 47 H 0.11 1.88 5.61 -2.38 -0.01 1.86 16 48 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -77.29 396.24 1.88 -75.41 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: 0.25 Total: 33.35 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 5.26 Total: -0.06 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -4.08 Total: -121.87 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.57 Total: -36.22 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -77.29 1.88 -75.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700168903.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.336 kcal (2) G-P(sol) polarization free energy of solvation -77.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds