Wall clock time and date at job start Wed Apr 1 2020 02:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00163 * 2 1 4 4 H 1.48496 * 109.46952 * 269.99995 * 3 2 1 5 5 H 1.48503 * 109.46968 * 29.99852 * 3 2 1 6 6 H 1.48488 * 109.47036 * 149.99719 * 3 2 1 7 7 C 1.38810 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99404 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00150 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99875 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47305 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.51062 * 304.89831 * 11 10 9 13 13 C 1.52876 * 109.62827 * 184.90768 * 11 10 9 14 14 N 1.47145 * 108.61079 * 187.89752 * 13 11 10 15 15 C 1.34778 * 120.98520 * 230.49845 * 14 13 11 16 16 O 1.21555 * 119.99754 * 5.18224 * 15 14 13 17 17 C 1.47843 * 120.00361 * 185.18132 * 15 14 13 18 18 C 1.39598 * 120.14247 * 51.12924 * 17 15 14 19 19 C 1.37940 * 119.85124 * 180.29279 * 18 17 15 20 20 C 1.38377 * 120.14539 * 359.43210 * 19 18 17 21 21 C 1.38338 * 120.29352 * 0.29820 * 20 19 18 22 22 C 1.37983 * 120.14247 * 359.97438 * 21 20 19 23 23 C 1.50704 * 120.07432 * 179.97438 * 22 21 20 24 24 C 1.53791 * 113.61110 * 42.92248 * 23 22 21 25 25 C 1.53778 * 87.07865 * 220.01664 * 24 23 22 26 26 C 1.53780 * 113.61365 * 305.42849 * 23 22 21 27 27 C 1.47153 * 118.03468 * 50.22695 * 14 13 11 28 28 C 1.53292 * 108.38425 * 309.71341 * 27 14 13 29 29 O 1.42962 * 109.22088 * 52.30676 * 28 27 14 30 30 H 0.96997 * 119.99806 * 0.02562 * 1 2 3 31 31 H 0.96995 * 119.99925 * 359.97438 * 9 7 2 32 32 H 1.09008 * 109.47117 * 59.99727 * 10 9 7 33 33 H 1.08997 * 109.46944 * 300.00336 * 10 9 7 34 34 H 1.09000 * 109.61955 * 68.07532 * 13 11 10 35 35 H 1.09001 * 109.52218 * 307.66464 * 13 11 10 36 36 H 1.08005 * 120.07401 * 0.02562 * 18 17 15 37 37 H 1.07995 * 119.92264 * 179.70779 * 19 18 17 38 38 H 1.07998 * 119.85738 * 180.27618 * 20 19 18 39 39 H 1.07996 * 119.92950 * 179.97438 * 21 20 19 40 40 H 1.08991 * 112.85279 * 174.22612 * 23 22 21 41 41 H 1.09002 * 113.61125 * 334.56789 * 24 23 22 42 42 H 1.08995 * 113.61047 * 105.46911 * 24 23 22 43 43 H 1.08998 * 113.61830 * 270.88077 * 25 24 23 44 44 H 1.09009 * 113.68777 * 139.99208 * 25 24 23 45 45 H 1.08997 * 113.60983 * 254.52098 * 26 23 22 46 46 H 1.08998 * 113.61898 * 25.34274 * 26 23 22 47 47 H 1.08996 * 109.68368 * 69.43868 * 27 14 13 48 48 H 1.08999 * 109.68096 * 189.95786 * 27 14 13 49 49 H 1.09001 * 109.51457 * 172.22368 * 28 27 14 50 50 H 1.09000 * 109.51513 * 292.37780 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.3807 -4.7142 0.8441 13 6 1.8205 -6.1423 0.1244 14 7 0.8686 -7.2477 -0.0678 15 6 0.8005 -8.2658 0.8128 16 8 1.4638 -8.2340 1.8310 17 6 -0.0809 -9.4211 0.5406 18 6 -0.0103 -10.0828 -0.6866 19 6 -0.8398 -11.1563 -0.9365 20 6 -1.7321 -11.5849 0.0304 21 6 -1.8032 -10.9371 1.2507 22 6 -0.9831 -9.8585 1.5113 23 6 -1.0622 -9.1535 2.8410 24 6 -1.1678 -10.1105 4.0402 25 6 -2.1793 -9.1202 4.6409 26 6 -2.4781 -8.6730 3.2002 27 6 -0.0112 -7.2058 -1.2466 28 6 -0.6826 -5.8288 -1.3001 29 8 0.3201 -4.8129 -1.2198 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6847 -3.7146 0.8906 33 1 2.6846 -3.7145 -0.8894 34 1 2.2723 -6.2147 1.1137 35 1 2.5974 -6.1899 -0.6388 36 1 0.6891 -9.7523 -1.4402 37 1 -0.7894 -11.6661 -1.8872 38 1 -2.3762 -12.4286 -0.1686 39 1 -2.5020 -11.2763 2.0009 40 1 -0.2975 -8.3860 2.9593 41 1 -1.6009 -11.0788 3.7893 42 1 -0.2452 -10.1944 4.6144 43 1 -1.7199 -8.3439 5.2527 44 1 -3.0246 -9.6018 5.1328 45 1 -2.6133 -7.5965 3.0964 46 1 -3.2695 -9.2474 2.7185 47 1 0.5780 -7.3623 -2.1501 48 1 -0.7715 -7.9825 -1.1650 49 1 -1.2299 -5.7267 -2.2372 50 1 -1.3720 -5.7270 -0.4620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700168904.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:01 Heat of formation + Delta-G solvation = -12.221650 kcal Electronic energy + Delta-G solvation = -30615.015799 eV Core-core repulsion = 26608.376438 eV Total energy + Delta-G solvation = -4006.639361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.08327 -39.67634 -38.24059 -37.83174 -35.06997 -34.40040 -32.40141 -31.60998 -31.36504 -30.10904 -28.13992 -26.16887 -25.81852 -25.42836 -23.92829 -23.46225 -22.46017 -21.88940 -20.85634 -19.58186 -19.37715 -17.77450 -17.10942 -16.87172 -16.48939 -16.06884 -16.05439 -15.41453 -15.11693 -14.91034 -14.83739 -14.54587 -14.33960 -14.13330 -13.78618 -13.56575 -13.22561 -13.13378 -12.88612 -12.70045 -12.65036 -12.46793 -12.30759 -12.01462 -11.97254 -11.76197 -11.59737 -10.99540 -10.88346 -10.86834 -10.78985 -10.66043 -10.49011 -10.39394 -10.05814 -9.89965 -9.88738 -9.66769 -9.22267 -8.99208 -8.85227 -8.54717 -6.87754 -5.71357 -3.00068 0.69958 0.99470 2.49665 2.74948 3.38109 3.47195 3.51833 3.53739 3.95183 4.19360 4.33244 4.34737 4.52110 4.59490 4.60148 4.66750 4.74277 4.77172 4.82334 4.91197 5.03004 5.08569 5.11923 5.14085 5.30556 5.40175 5.45005 5.48106 5.53514 5.56211 5.61429 5.65518 5.68251 5.71610 5.71936 5.79706 5.86336 5.89361 5.94958 5.98379 6.09928 6.14774 6.27533 6.31937 6.39325 6.54683 6.57155 6.70423 7.19307 7.46447 7.73400 7.96368 8.46714 9.58389 10.15382 10.51280 11.51489 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.002531 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.771455 B =11059.468330 C =11901.240628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.074 3.926 12 H 0.063 0.937 13 C 0.085 3.915 14 N -0.606 5.606 15 C 0.564 3.436 16 O -0.530 6.530 17 C -0.124 4.124 18 C -0.087 4.087 19 C -0.130 4.130 20 C -0.098 4.098 21 C -0.122 4.122 22 C -0.019 4.019 23 C -0.090 4.090 24 C -0.128 4.128 25 C -0.141 4.141 26 C -0.133 4.133 27 C 0.069 3.931 28 C 0.046 3.954 29 O -0.357 6.357 30 H 0.254 0.746 31 H 0.387 0.613 32 H 0.036 0.964 33 H 0.030 0.970 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.094 0.906 49 H 0.105 0.895 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 -27.643 0.479 28.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.371 5.371 10 C 0.036 3.964 11 C 0.015 3.985 12 H 0.081 0.919 13 C -0.038 4.038 14 N -0.339 5.339 15 C 0.352 3.648 16 O -0.407 6.407 17 C -0.127 4.127 18 C -0.105 4.105 19 C -0.148 4.148 20 C -0.116 4.116 21 C -0.140 4.140 22 C -0.019 4.019 23 C -0.108 4.108 24 C -0.166 4.166 25 C -0.178 4.178 26 C -0.170 4.170 27 C -0.054 4.054 28 C -0.032 4.032 29 O -0.275 6.275 30 H 0.064 0.936 31 H 0.221 0.779 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.133 0.867 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.112 0.888 49 H 0.123 0.877 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.844 -27.352 0.888 27.984 hybrid contribution 0.060 0.659 -0.070 0.665 sum -5.784 -26.693 0.819 27.325 Atomic orbital electron populations 1.69677 1.05112 1.25552 1.57721 1.24745 0.95531 0.97671 1.03058 0.86174 0.78623 0.83811 0.77496 1.21729 1.21808 1.20760 1.19225 0.91019 0.84075 1.42672 0.91135 1.42228 1.06013 0.99492 1.89351 1.20613 0.92378 0.84630 0.98820 1.22709 0.94213 0.94193 0.87362 0.91890 1.22296 0.91739 0.85392 1.04360 1.48095 1.38446 1.22474 1.24931 1.18368 0.81717 0.82073 0.82627 1.90771 1.44916 1.79303 1.25751 1.19766 0.99352 0.98007 0.95533 1.21286 0.98460 0.95582 0.95179 1.21074 0.96660 0.97245 0.99814 1.21300 0.97885 0.99152 0.93289 1.20956 0.99753 0.95845 0.97484 1.19773 0.93357 0.94410 0.94408 1.21882 0.99232 0.99222 0.90511 1.22958 0.99885 0.97339 0.96370 1.22813 0.99281 0.99365 0.96380 1.23009 0.95791 1.01616 0.96594 1.22642 0.94517 0.99941 0.88265 1.22913 0.90903 0.86406 1.02957 1.88161 1.49399 1.52067 1.37908 0.93571 0.77909 0.94642 0.95257 0.87896 0.90269 0.85422 0.85430 0.85640 0.85420 0.86731 0.90033 0.91087 0.89910 0.91337 0.91130 0.89982 0.90335 0.88787 0.87736 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.82 13.06 55.49 0.72 -28.10 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.14 5.55 -59.91 -0.33 -19.47 16 10 C 0.16 3.40 5.93 -4.04 -0.02 3.38 16 11 C 0.07 1.29 2.80 -26.80 -0.07 1.21 16 12 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 13 C 0.08 1.24 5.92 -3.75 -0.02 1.22 16 14 N -0.61 -7.98 3.03 -173.65 -0.53 -8.51 16 15 C 0.56 7.86 6.52 -12.33 -0.08 7.78 16 16 O -0.53 -9.00 14.57 5.32 0.08 -8.92 16 17 C -0.12 -1.41 4.71 -104.97 -0.49 -1.90 16 18 C -0.09 -0.78 7.73 -39.18 -0.30 -1.08 16 19 C -0.13 -0.94 10.03 -39.64 -0.40 -1.34 16 20 C -0.10 -0.69 10.04 -39.49 -0.40 -1.09 16 21 C -0.12 -1.01 8.43 -39.64 -0.33 -1.34 16 22 C -0.02 -0.20 5.32 -104.22 -0.55 -0.75 16 23 C -0.09 -0.99 3.65 -90.95 -0.33 -1.32 16 24 C -0.13 -1.16 7.47 -25.91 -0.19 -1.36 16 25 C -0.14 -1.19 8.08 -25.92 -0.21 -1.40 16 26 C -0.13 -1.23 7.52 -25.92 -0.19 -1.43 16 27 C 0.07 0.74 5.55 -3.53 -0.02 0.72 16 28 C 0.05 0.59 6.98 37.31 0.26 0.85 16 29 O -0.36 -6.29 10.33 -35.23 -0.36 -6.65 16 30 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.39 10.84 7.67 -40.82 -0.31 10.52 16 32 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.57 7.06 -51.93 -0.37 1.20 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.13 1.01 7.55 -52.48 -0.40 0.61 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.13 0.83 6.73 -52.49 -0.35 0.47 16 40 H 0.11 1.59 5.56 -51.93 -0.29 1.30 16 41 H 0.08 0.62 6.61 -51.93 -0.34 0.28 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 0.66 7.35 -51.93 -0.38 0.27 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.09 0.85 5.47 -51.93 -0.28 0.57 16 49 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 50 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 395.40 15.07 5.96 5.96 Total: -1.00 -34.19 395.40 -10.87 -45.06 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -7.77 Total: 8.22 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -3.62 Total: -5.36 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.13 Total: -56.08 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.29 Total: -15.58 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.19 -10.87 -45.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700168904.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.836 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds