Wall clock time and date at job start Wed Apr 1 2020 02:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00163 * 2 1 4 4 H 1.48496 * 109.46952 * 269.99995 * 3 2 1 5 5 H 1.48503 * 109.46968 * 29.99852 * 3 2 1 6 6 H 1.48488 * 109.47036 * 149.99719 * 3 2 1 7 7 C 1.38810 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99404 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00150 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99875 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47305 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.51062 * 304.89831 * 11 10 9 13 13 C 1.52876 * 109.62827 * 184.90768 * 11 10 9 14 14 N 1.47145 * 108.61079 * 187.89752 * 13 11 10 15 15 C 1.34778 * 120.98520 * 230.49845 * 14 13 11 16 16 O 1.21555 * 119.99754 * 5.18224 * 15 14 13 17 17 C 1.47843 * 120.00361 * 185.18132 * 15 14 13 18 18 C 1.39598 * 120.14247 * 51.12924 * 17 15 14 19 19 C 1.37940 * 119.85124 * 180.29279 * 18 17 15 20 20 C 1.38377 * 120.14539 * 359.43210 * 19 18 17 21 21 C 1.38338 * 120.29352 * 0.29820 * 20 19 18 22 22 C 1.37983 * 120.14247 * 359.97438 * 21 20 19 23 23 C 1.50704 * 120.07432 * 179.97438 * 22 21 20 24 24 C 1.53791 * 113.61110 * 42.92248 * 23 22 21 25 25 C 1.53778 * 87.07865 * 220.01664 * 24 23 22 26 26 C 1.53780 * 113.61365 * 305.42849 * 23 22 21 27 27 C 1.47153 * 118.03468 * 50.22695 * 14 13 11 28 28 C 1.53292 * 108.38425 * 309.71341 * 27 14 13 29 29 O 1.42962 * 109.22088 * 52.30676 * 28 27 14 30 30 H 0.96997 * 119.99806 * 0.02562 * 1 2 3 31 31 H 0.96995 * 119.99925 * 359.97438 * 9 7 2 32 32 H 1.09008 * 109.47117 * 59.99727 * 10 9 7 33 33 H 1.08997 * 109.46944 * 300.00336 * 10 9 7 34 34 H 1.09000 * 109.61955 * 68.07532 * 13 11 10 35 35 H 1.09001 * 109.52218 * 307.66464 * 13 11 10 36 36 H 1.08005 * 120.07401 * 0.02562 * 18 17 15 37 37 H 1.07995 * 119.92264 * 179.70779 * 19 18 17 38 38 H 1.07998 * 119.85738 * 180.27618 * 20 19 18 39 39 H 1.07996 * 119.92950 * 179.97438 * 21 20 19 40 40 H 1.08991 * 112.85279 * 174.22612 * 23 22 21 41 41 H 1.09002 * 113.61125 * 334.56789 * 24 23 22 42 42 H 1.08995 * 113.61047 * 105.46911 * 24 23 22 43 43 H 1.08998 * 113.61830 * 270.88077 * 25 24 23 44 44 H 1.09009 * 113.68777 * 139.99208 * 25 24 23 45 45 H 1.08997 * 113.60983 * 254.52098 * 26 23 22 46 46 H 1.08998 * 113.61898 * 25.34274 * 26 23 22 47 47 H 1.08996 * 109.68368 * 69.43868 * 27 14 13 48 48 H 1.08999 * 109.68096 * 189.95786 * 27 14 13 49 49 H 1.09001 * 109.51457 * 172.22368 * 28 27 14 50 50 H 1.09000 * 109.51513 * 292.37780 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.3807 -4.7142 0.8441 13 6 1.8205 -6.1423 0.1244 14 7 0.8686 -7.2477 -0.0678 15 6 0.8005 -8.2658 0.8128 16 8 1.4638 -8.2340 1.8310 17 6 -0.0809 -9.4211 0.5406 18 6 -0.0103 -10.0828 -0.6866 19 6 -0.8398 -11.1563 -0.9365 20 6 -1.7321 -11.5849 0.0304 21 6 -1.8032 -10.9371 1.2507 22 6 -0.9831 -9.8585 1.5113 23 6 -1.0622 -9.1535 2.8410 24 6 -1.1678 -10.1105 4.0402 25 6 -2.1793 -9.1202 4.6409 26 6 -2.4781 -8.6730 3.2002 27 6 -0.0112 -7.2058 -1.2466 28 6 -0.6826 -5.8288 -1.3001 29 8 0.3201 -4.8129 -1.2198 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6847 -3.7146 0.8906 33 1 2.6846 -3.7145 -0.8894 34 1 2.2723 -6.2147 1.1137 35 1 2.5974 -6.1899 -0.6388 36 1 0.6891 -9.7523 -1.4402 37 1 -0.7894 -11.6661 -1.8872 38 1 -2.3762 -12.4286 -0.1686 39 1 -2.5020 -11.2763 2.0009 40 1 -0.2975 -8.3860 2.9593 41 1 -1.6009 -11.0788 3.7893 42 1 -0.2452 -10.1944 4.6144 43 1 -1.7199 -8.3439 5.2527 44 1 -3.0246 -9.6018 5.1328 45 1 -2.6133 -7.5965 3.0964 46 1 -3.2695 -9.2474 2.7185 47 1 0.5780 -7.3623 -2.1501 48 1 -0.7715 -7.9825 -1.1650 49 1 -1.2299 -5.7267 -2.2372 50 1 -1.3720 -5.7270 -0.4620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700168904.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:59 Heat of formation + Delta-G solvation = -33.355121 kcal Electronic energy + Delta-G solvation = -30615.932215 eV Core-core repulsion = 26608.376438 eV Total energy + Delta-G solvation = -4007.555777 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.99948 -40.64823 -39.35488 -38.58236 -36.70372 -35.82285 -34.01852 -32.57012 -32.12406 -31.61756 -29.38170 -27.52616 -26.55466 -26.40932 -25.08079 -24.79104 -23.64995 -22.84088 -22.21930 -20.53269 -20.11266 -19.26601 -18.63552 -17.93767 -17.52356 -17.18188 -16.90624 -16.68961 -16.41320 -16.01273 -15.89014 -15.71927 -15.25875 -15.20448 -15.05193 -14.81310 -14.47622 -14.31820 -14.15163 -14.00342 -13.56063 -13.45587 -13.38936 -13.10599 -12.80057 -12.77086 -12.70651 -12.65134 -12.39834 -12.26601 -12.08016 -11.89731 -11.74272 -11.55701 -11.40392 -11.23797 -11.12335 -10.97882 -10.91767 -9.91506 -9.69698 -9.61930 -9.03313 -7.95339 -5.25432 0.00072 0.37970 1.46451 1.48842 1.49611 1.57960 1.75489 2.55363 2.68689 2.73224 3.30877 3.38434 3.51611 3.60314 3.64935 3.79557 3.84931 3.89066 3.96973 4.00641 4.02811 4.09421 4.14651 4.19081 4.27766 4.38806 4.42278 4.44853 4.52426 4.59534 4.67517 4.75705 4.76790 4.78704 4.80927 4.87338 4.91164 4.99787 5.03396 5.04323 5.08130 5.15707 5.22084 5.38767 5.46853 5.47811 5.52039 5.63973 5.96394 6.16106 6.18328 6.25718 6.91589 7.31757 8.04605 8.29859 9.28460 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.002531 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.771455 B =11059.468330 C =11901.240628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.248 4.248 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.162 3.838 11 C 0.089 3.911 12 H 0.042 0.958 13 C 0.095 3.905 14 N -0.607 5.607 15 C 0.561 3.439 16 O -0.572 6.572 17 C -0.150 4.150 18 C -0.089 4.089 19 C -0.125 4.125 20 C -0.089 4.089 21 C -0.124 4.124 22 C -0.035 4.035 23 C -0.101 4.101 24 C -0.122 4.122 25 C -0.137 4.137 26 C -0.128 4.128 27 C 0.077 3.923 28 C 0.039 3.961 29 O -0.384 6.384 30 H 0.252 0.748 31 H 0.374 0.626 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.147 0.853 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.052 0.948 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.116 0.884 49 H 0.131 0.869 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.161 -30.360 -1.002 31.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.380 4.380 8 H 0.097 0.903 9 N -0.384 5.384 10 C 0.035 3.965 11 C 0.030 3.970 12 H 0.060 0.940 13 C -0.029 4.029 14 N -0.340 5.340 15 C 0.351 3.649 16 O -0.453 6.453 17 C -0.153 4.153 18 C -0.107 4.107 19 C -0.143 4.143 20 C -0.107 4.107 21 C -0.142 4.142 22 C -0.036 4.036 23 C -0.119 4.119 24 C -0.160 4.160 25 C -0.174 4.174 26 C -0.165 4.165 27 C -0.045 4.045 28 C -0.038 4.038 29 O -0.303 6.303 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.155 0.845 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.165 0.835 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.071 0.929 46 H 0.120 0.880 47 H 0.117 0.883 48 H 0.134 0.866 49 H 0.149 0.851 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.601 -30.106 -0.612 30.827 hybrid contribution 0.270 1.401 0.364 1.473 sum -6.331 -28.704 -0.248 29.395 Atomic orbital electron populations 1.69847 1.06745 1.26117 1.59333 1.25642 0.96469 1.01302 1.03501 0.85069 0.77660 0.79068 0.77522 1.21211 1.22085 1.19295 1.19668 0.91608 0.85168 1.41517 0.90344 1.42423 1.05645 1.00879 1.89411 1.20747 0.92994 0.83809 0.98988 1.22352 0.93387 0.94317 0.86940 0.93999 1.22037 0.91964 0.84664 1.04211 1.48173 1.38393 1.21750 1.25666 1.18916 0.81424 0.82737 0.81780 1.90737 1.46712 1.80340 1.27467 1.19687 1.00254 0.97991 0.97350 1.21443 0.99027 0.96008 0.94267 1.21446 0.95528 0.96239 1.01053 1.21728 0.97425 0.99224 0.92278 1.21189 0.99409 0.94885 0.98704 1.19860 0.94340 0.95508 0.93843 1.21782 0.98930 0.99109 0.92118 1.22975 0.99603 0.98082 0.95291 1.22789 0.99726 0.98969 0.95943 1.23020 0.95447 1.00813 0.97253 1.22753 0.94819 0.99006 0.87920 1.23204 0.90068 0.86568 1.03929 1.88098 1.50519 1.54259 1.37434 0.93972 0.79404 0.93950 0.94826 0.89086 0.88852 0.84503 0.82461 0.82380 0.83487 0.90747 0.87812 0.92394 0.91179 0.89164 0.92879 0.87952 0.88267 0.86597 0.85139 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.42 13.06 21.65 0.28 -61.14 16 2 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 3 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.74 -40.22 5.55 -343.45 -1.91 -42.12 16 10 C 0.16 6.90 5.93 86.38 0.51 7.42 16 11 C 0.09 3.22 2.80 30.55 0.09 3.31 16 12 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 13 C 0.09 2.85 5.92 86.22 0.51 3.36 16 14 N -0.61 -16.16 3.03 -821.59 -2.49 -18.65 16 15 C 0.56 16.18 6.52 86.79 0.57 16.74 16 16 O -0.57 -20.82 14.57 -3.89 -0.06 -20.88 16 17 C -0.15 -3.33 4.71 -20.09 -0.09 -3.42 16 18 C -0.09 -1.38 7.73 22.53 0.17 -1.21 16 19 C -0.13 -1.30 10.03 22.23 0.22 -1.08 16 20 C -0.09 -0.86 10.04 22.33 0.22 -0.63 16 21 C -0.12 -1.67 8.43 22.23 0.19 -1.48 16 22 C -0.03 -0.70 5.32 -19.61 -0.10 -0.81 16 23 C -0.10 -2.28 3.65 -11.01 -0.04 -2.32 16 24 C -0.12 -2.18 7.47 31.12 0.23 -1.95 16 25 C -0.14 -2.28 8.08 31.12 0.25 -2.03 16 26 C -0.13 -2.37 7.52 31.12 0.23 -2.13 16 27 C 0.08 1.54 5.55 86.35 0.48 2.02 16 28 C 0.04 0.99 6.98 72.08 0.50 1.50 16 29 O -0.38 -13.74 10.33 -148.98 -1.54 -15.28 16 30 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.37 21.86 7.67 -92.71 -0.71 21.15 16 32 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 2.96 7.06 -2.39 -0.02 2.94 16 35 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.14 1.79 7.55 -2.91 -0.02 1.77 16 37 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 38 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 39 H 0.15 1.34 6.73 -2.91 -0.02 1.32 16 40 H 0.07 2.29 5.56 -2.39 -0.01 2.28 16 41 H 0.10 1.36 6.61 -2.39 -0.02 1.34 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.10 1.45 7.35 -2.39 -0.02 1.43 16 47 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.12 1.86 5.47 -2.39 -0.01 1.85 16 49 H 0.13 2.58 8.14 -2.39 -0.02 2.57 16 50 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -77.30 395.40 1.81 -75.49 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.24 Total: 33.62 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 5.25 Total: -0.43 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -4.11 Total: -121.91 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -1.60 Total: -36.16 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -77.30 1.81 -75.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700168904.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.139 kcal (2) G-P(sol) polarization free energy of solvation -77.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds