Wall clock time and date at job start Wed Apr 1 2020 02:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48497 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46961 * 300.00428 * 3 2 1 6 6 H 1.48505 * 109.47051 * 59.99991 * 3 2 1 7 7 C 1.38812 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99761 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.47582 * 134.49189 * 180.02562 * 9 7 2 11 11 C 1.53944 * 86.11909 * 155.35798 * 10 9 7 12 12 C 1.53004 * 113.73793 * 269.15191 * 11 10 9 13 13 C 1.53008 * 109.46505 * 172.41371 * 12 11 10 14 14 O 1.42907 * 109.46678 * 175.21357 * 13 12 11 15 15 N 1.46501 * 113.74371 * 137.95215 * 11 10 9 16 16 C 1.34783 * 119.99721 * 74.31860 * 15 11 10 17 17 O 1.21280 * 120.00249 * 355.54110 * 16 15 11 18 18 C 1.50696 * 119.99581 * 175.54345 * 16 15 11 19 19 C 1.50707 * 109.46735 * 179.97438 * 18 16 15 20 20 C 1.38256 * 119.99781 * 269.72451 * 19 18 16 21 21 C 1.38215 * 119.99650 * 179.79090 * 20 19 18 22 22 C 1.38253 * 120.00301 * 0.46232 * 21 20 19 23 23 C 1.38215 * 119.99570 * 359.76902 * 22 21 20 24 24 C 1.50709 * 119.99901 * 180.02562 * 23 22 21 25 25 C 1.52998 * 117.49905 * 8.64258 * 24 23 22 26 26 C 1.53001 * 117.49464 * 300.01927 * 24 23 22 27 27 C 1.38211 * 120.00078 * 90.00170 * 19 18 16 28 28 C 1.47818 * 134.45887 * 359.86705 * 9 7 2 29 29 H 0.96998 * 120.00442 * 359.97438 * 1 2 3 30 30 H 1.09003 * 113.76717 * 41.05418 * 10 9 7 31 31 H 1.09001 * 113.87237 * 269.67425 * 10 9 7 32 32 H 1.08995 * 109.47368 * 292.41207 * 12 11 10 33 33 H 1.09000 * 109.46964 * 52.42369 * 12 11 10 34 34 H 1.09000 * 109.47269 * 295.20994 * 13 12 11 35 35 H 1.08996 * 109.46987 * 55.21190 * 13 12 11 36 36 H 0.96701 * 113.99708 * 180.02562 * 14 13 12 37 37 H 0.96993 * 120.00180 * 254.59172 * 15 11 10 38 38 H 1.08993 * 109.47537 * 299.99564 * 18 16 15 39 39 H 1.08999 * 109.47344 * 60.00586 * 18 16 15 40 40 H 1.08004 * 120.00649 * 359.97438 * 20 19 18 41 41 H 1.08002 * 119.99884 * 180.25126 * 21 20 19 42 42 H 1.08000 * 120.00322 * 179.79271 * 22 21 20 43 43 H 1.08994 * 115.55195 * 154.35621 * 24 23 22 44 44 H 1.09002 * 117.49897 * 0.02562 * 25 24 23 45 45 H 1.08992 * 117.49950 * 145.02177 * 25 24 23 46 46 H 1.08999 * 117.49939 * 214.97867 * 26 24 23 47 47 H 1.08998 * 117.50270 * 359.97438 * 26 24 23 48 48 H 1.08002 * 119.99986 * 359.97408 * 27 19 18 49 49 H 1.08995 * 113.76659 * 90.38126 * 28 9 7 50 50 H 1.08993 * 113.83300 * 318.91458 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.7202 -3.8101 -0.0005 11 6 0.3472 -4.0829 0.6399 12 6 0.3647 -4.0563 2.1696 13 6 -1.0683 -4.1487 2.6976 14 8 -1.0456 -4.2361 4.1238 15 7 -0.3332 -5.2614 0.0970 16 6 0.0883 -6.4969 0.4323 17 8 1.0794 -6.6344 1.1177 18 6 -0.6719 -7.7075 -0.0446 19 6 0.0019 -8.9561 0.4636 20 6 0.9839 -9.5683 -0.2928 21 6 1.6049 -10.7109 0.1753 22 6 1.2374 -11.2471 1.3955 23 6 0.2523 -10.6376 2.1494 24 6 -0.1479 -11.2217 3.4799 25 6 0.7044 -12.3647 4.0348 26 6 -0.6959 -12.6502 3.4881 27 6 -0.3659 -9.4923 1.6832 28 6 -0.1057 -2.7571 0.0024 29 1 -0.4851 0.8400 0.0004 30 1 2.5626 -4.0322 0.6546 31 1 1.8327 -4.2367 -0.9973 32 1 0.9441 -4.9014 2.5411 33 1 0.8186 -3.1261 2.5115 34 1 -1.6244 -3.2608 2.3969 35 1 -1.5504 -5.0358 2.2868 36 1 -1.9219 -4.2981 4.5281 37 1 -1.0844 -5.1524 -0.5068 38 1 -1.6938 -7.6666 0.3324 39 1 -0.6869 -7.7212 -1.1344 40 1 1.2679 -9.1522 -1.2481 41 1 2.3749 -11.1869 -0.4138 42 1 1.7203 -12.1418 1.7597 43 1 -0.5713 -10.5162 4.1947 44 1 1.5549 -12.6940 3.4378 45 1 0.8421 -12.4112 5.1150 46 1 -1.4793 -12.8846 4.2087 47 1 -0.7672 -13.1674 2.5313 48 1 -1.1359 -9.0163 2.2723 49 1 -0.5318 -2.8718 -0.9943 50 1 -0.7183 -2.1403 0.6599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700494315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:46 Heat of formation + Delta-G solvation = 17.254653 kcal Electronic energy + Delta-G solvation = -30129.233682 eV Core-core repulsion = 26123.872509 eV Total energy + Delta-G solvation = -4005.361173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.28648 -39.58241 -37.91702 -36.83114 -36.36277 -33.59799 -32.73644 -31.79745 -30.86816 -30.29238 -27.80281 -26.84893 -25.04937 -23.97066 -23.39305 -22.80566 -22.22182 -21.66433 -20.55619 -19.49035 -18.63273 -17.21796 -17.00284 -16.83048 -16.72726 -16.09989 -15.47934 -15.39357 -14.82801 -14.70415 -14.67204 -14.25611 -14.09818 -13.76310 -13.69725 -13.56145 -13.19347 -12.74218 -12.55514 -12.35304 -12.10258 -11.90378 -11.79092 -11.71987 -11.47481 -11.28294 -11.08868 -11.03905 -10.93185 -10.82921 -10.77846 -10.68519 -10.56997 -10.13102 -9.96362 -9.70243 -9.57573 -9.19834 -8.89054 -8.77599 -8.55025 -8.53580 -6.93533 -5.81562 -3.13161 1.25572 1.35074 2.94226 3.31055 3.38378 3.44123 3.46297 3.60892 3.94847 4.29789 4.45646 4.49533 4.56945 4.66759 4.73105 4.84148 4.90746 5.02448 5.05212 5.18826 5.24199 5.29380 5.32129 5.37433 5.42917 5.47574 5.51863 5.55233 5.62942 5.74775 5.78865 5.81542 5.84550 5.96507 5.97939 6.01569 6.34522 6.41150 6.49443 6.51101 6.51492 6.56233 6.64802 6.80389 6.85492 6.95018 7.11287 7.32254 7.47760 7.87477 7.90988 7.94091 8.59242 9.00746 9.66677 10.53129 11.36210 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019031 B = 0.002368 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.896899 B =11822.011791 C =12481.667919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.218 4.218 8 H 0.083 0.917 9 N -0.605 5.605 10 C 0.124 3.876 11 C 0.126 3.874 12 C -0.096 4.096 13 C 0.084 3.916 14 O -0.574 6.574 15 N -0.718 5.718 16 C 0.511 3.489 17 O -0.524 6.524 18 C -0.106 4.106 19 C -0.055 4.055 20 C -0.109 4.109 21 C -0.116 4.116 22 C -0.125 4.125 23 C -0.052 4.052 24 C -0.116 4.116 25 C -0.178 4.178 26 C -0.171 4.171 27 C -0.097 4.097 28 C 0.166 3.834 29 H 0.253 0.747 30 H 0.050 0.950 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.035 0.965 36 H 0.371 0.629 37 H 0.397 0.603 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.119 0.881 49 H 0.030 0.970 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.570 -23.658 2.477 24.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.345 4.345 8 H 0.100 0.900 9 N -0.331 5.331 10 C -0.003 4.003 11 C 0.040 3.960 12 C -0.135 4.135 13 C 0.006 3.994 14 O -0.379 6.379 15 N -0.370 5.370 16 C 0.296 3.704 17 O -0.400 6.400 18 C -0.146 4.146 19 C -0.055 4.055 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.143 4.143 23 C -0.052 4.052 24 C -0.134 4.134 25 C -0.214 4.214 26 C -0.208 4.208 27 C -0.115 4.115 28 C 0.040 3.960 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.216 0.784 37 H 0.230 0.770 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.137 0.863 49 H 0.048 0.952 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.147 -23.347 2.885 24.081 hybrid contribution -0.563 1.039 -0.491 1.279 sum -5.709 -22.308 2.394 23.151 Atomic orbital electron populations 1.69794 1.05004 1.25319 1.56905 1.24773 0.95726 0.97554 1.02378 0.86021 0.78825 0.83555 0.77238 1.20405 1.21764 1.21643 1.19051 0.90342 0.81543 1.43570 0.89965 1.45712 1.01891 0.99521 1.86021 1.22846 0.94847 0.85690 0.96875 1.22898 0.95326 0.84493 0.93271 1.21332 0.95588 1.04380 0.92170 1.22118 0.98377 0.98942 0.79936 1.86509 1.33385 1.97297 1.20685 1.46227 1.35879 1.05491 1.49440 1.20405 0.85193 0.84103 0.80675 1.90715 1.25403 1.86120 1.37729 1.20733 1.00019 0.91108 1.02750 1.19244 0.96774 0.94782 0.94750 1.20972 0.95974 0.95724 1.00004 1.21029 0.99696 0.96459 0.96170 1.20962 0.97843 1.00443 0.95003 1.19023 0.96456 0.95450 0.94306 1.21036 1.04836 0.91388 0.96107 1.23058 0.94698 1.02505 1.01166 1.23017 0.97107 0.97631 1.03015 1.20724 1.00102 0.95437 0.95251 1.22579 0.88973 0.87568 0.96887 0.93660 0.93170 0.94717 0.90248 0.89400 0.93388 0.94697 0.78368 0.76955 0.88253 0.88160 0.86240 0.86177 0.86320 0.86958 0.88372 0.88473 0.88555 0.88655 0.86335 0.95222 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 11.39 55.49 0.63 -26.05 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.22 -6.09 10.70 -15.06 -0.16 -6.25 16 8 H 0.08 2.26 7.83 -52.48 -0.41 1.84 16 9 N -0.60 -15.42 3.55 -177.50 -0.63 -16.05 16 10 C 0.12 2.71 8.02 -2.97 -0.02 2.69 16 11 C 0.13 2.38 0.68 -134.03 -0.09 2.29 16 12 C -0.10 -1.88 4.68 -26.72 -0.12 -2.01 16 13 C 0.08 1.38 6.86 37.16 0.25 1.63 16 14 O -0.57 -9.29 13.66 -35.23 -0.48 -9.77 16 15 N -0.72 -10.44 4.52 -49.07 -0.22 -10.66 16 16 C 0.51 7.48 7.42 -10.98 -0.08 7.40 16 17 O -0.52 -9.90 14.22 5.56 0.08 -9.82 16 18 C -0.11 -1.10 5.83 -29.03 -0.17 -1.27 16 19 C -0.06 -0.66 4.37 -104.62 -0.46 -1.11 16 20 C -0.11 -1.26 9.70 -39.58 -0.38 -1.64 16 21 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 22 C -0.12 -1.32 9.30 -39.58 -0.37 -1.69 16 23 C -0.05 -0.58 5.61 -104.62 -0.59 -1.17 16 24 C -0.12 -1.07 6.04 -91.77 -0.55 -1.63 16 25 C -0.18 -1.37 9.86 -26.73 -0.26 -1.64 16 26 C -0.17 -1.26 10.16 -26.73 -0.27 -1.53 16 27 C -0.10 -1.15 9.39 -39.59 -0.37 -1.52 16 28 C 0.17 3.69 6.69 -2.84 -0.02 3.68 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.05 1.13 8.10 -51.93 -0.42 0.71 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.66 6.56 -51.93 -0.34 1.32 16 33 H 0.09 1.99 8.02 -51.93 -0.42 1.57 16 34 H 0.05 0.80 7.60 -51.93 -0.39 0.41 16 35 H 0.03 0.51 7.46 -51.93 -0.39 0.12 16 36 H 0.37 3.96 9.12 45.56 0.42 4.38 16 37 H 0.40 4.58 8.67 -40.82 -0.35 4.23 16 38 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 40 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.12 1.03 6.02 -52.49 -0.32 0.71 16 43 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.10 0.72 6.18 -51.93 -0.32 0.40 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 49 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.08 1.99 6.58 -51.93 -0.34 1.65 16 LS Contribution 408.71 15.07 6.16 6.16 Total: -1.00 -34.61 408.71 -10.72 -45.33 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.07 Total: 9.48 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -4.17 Total: -5.75 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.22 Total: -52.75 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.40 Total: -19.59 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.61 -10.72 -45.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700494315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.588 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds