Wall clock time and date at job start Wed Apr 1 2020 02:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48497 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46961 * 300.00428 * 3 2 1 6 6 H 1.48505 * 109.47051 * 59.99991 * 3 2 1 7 7 C 1.38812 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99761 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.47582 * 134.49189 * 180.02562 * 9 7 2 11 11 C 1.53944 * 86.11909 * 155.35798 * 10 9 7 12 12 C 1.53004 * 113.73793 * 269.15191 * 11 10 9 13 13 C 1.53008 * 109.46505 * 172.41371 * 12 11 10 14 14 O 1.42907 * 109.46678 * 175.21357 * 13 12 11 15 15 N 1.46501 * 113.74371 * 137.95215 * 11 10 9 16 16 C 1.34783 * 119.99721 * 74.31860 * 15 11 10 17 17 O 1.21280 * 120.00249 * 355.54110 * 16 15 11 18 18 C 1.50696 * 119.99581 * 175.54345 * 16 15 11 19 19 C 1.50707 * 109.46735 * 179.97438 * 18 16 15 20 20 C 1.38256 * 119.99781 * 269.72451 * 19 18 16 21 21 C 1.38215 * 119.99650 * 179.79090 * 20 19 18 22 22 C 1.38253 * 120.00301 * 0.46232 * 21 20 19 23 23 C 1.38215 * 119.99570 * 359.76902 * 22 21 20 24 24 C 1.50709 * 119.99901 * 180.02562 * 23 22 21 25 25 C 1.52998 * 117.49905 * 8.64258 * 24 23 22 26 26 C 1.53001 * 117.49464 * 300.01927 * 24 23 22 27 27 C 1.38211 * 120.00078 * 90.00170 * 19 18 16 28 28 C 1.47818 * 134.45887 * 359.86705 * 9 7 2 29 29 H 0.96998 * 120.00442 * 359.97438 * 1 2 3 30 30 H 1.09003 * 113.76717 * 41.05418 * 10 9 7 31 31 H 1.09001 * 113.87237 * 269.67425 * 10 9 7 32 32 H 1.08995 * 109.47368 * 292.41207 * 12 11 10 33 33 H 1.09000 * 109.46964 * 52.42369 * 12 11 10 34 34 H 1.09000 * 109.47269 * 295.20994 * 13 12 11 35 35 H 1.08996 * 109.46987 * 55.21190 * 13 12 11 36 36 H 0.96701 * 113.99708 * 180.02562 * 14 13 12 37 37 H 0.96993 * 120.00180 * 254.59172 * 15 11 10 38 38 H 1.08993 * 109.47537 * 299.99564 * 18 16 15 39 39 H 1.08999 * 109.47344 * 60.00586 * 18 16 15 40 40 H 1.08004 * 120.00649 * 359.97438 * 20 19 18 41 41 H 1.08002 * 119.99884 * 180.25126 * 21 20 19 42 42 H 1.08000 * 120.00322 * 179.79271 * 22 21 20 43 43 H 1.08994 * 115.55195 * 154.35621 * 24 23 22 44 44 H 1.09002 * 117.49897 * 0.02562 * 25 24 23 45 45 H 1.08992 * 117.49950 * 145.02177 * 25 24 23 46 46 H 1.08999 * 117.49939 * 214.97867 * 26 24 23 47 47 H 1.08998 * 117.50270 * 359.97438 * 26 24 23 48 48 H 1.08002 * 119.99986 * 359.97408 * 27 19 18 49 49 H 1.08995 * 113.76659 * 90.38126 * 28 9 7 50 50 H 1.08993 * 113.83300 * 318.91458 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.7202 -3.8101 -0.0005 11 6 0.3472 -4.0829 0.6399 12 6 0.3647 -4.0563 2.1696 13 6 -1.0683 -4.1487 2.6976 14 8 -1.0456 -4.2361 4.1238 15 7 -0.3332 -5.2614 0.0970 16 6 0.0883 -6.4969 0.4323 17 8 1.0794 -6.6344 1.1177 18 6 -0.6719 -7.7075 -0.0446 19 6 0.0019 -8.9561 0.4636 20 6 0.9839 -9.5683 -0.2928 21 6 1.6049 -10.7109 0.1753 22 6 1.2374 -11.2471 1.3955 23 6 0.2523 -10.6376 2.1494 24 6 -0.1479 -11.2217 3.4799 25 6 0.7044 -12.3647 4.0348 26 6 -0.6959 -12.6502 3.4881 27 6 -0.3659 -9.4923 1.6832 28 6 -0.1057 -2.7571 0.0024 29 1 -0.4851 0.8400 0.0004 30 1 2.5626 -4.0322 0.6546 31 1 1.8327 -4.2367 -0.9973 32 1 0.9441 -4.9014 2.5411 33 1 0.8186 -3.1261 2.5115 34 1 -1.6244 -3.2608 2.3969 35 1 -1.5504 -5.0358 2.2868 36 1 -1.9219 -4.2981 4.5281 37 1 -1.0844 -5.1524 -0.5068 38 1 -1.6938 -7.6666 0.3324 39 1 -0.6869 -7.7212 -1.1344 40 1 1.2679 -9.1522 -1.2481 41 1 2.3749 -11.1869 -0.4138 42 1 1.7203 -12.1418 1.7597 43 1 -0.5713 -10.5162 4.1947 44 1 1.5549 -12.6940 3.4378 45 1 0.8421 -12.4112 5.1150 46 1 -1.4793 -12.8846 4.2087 47 1 -0.7672 -13.1674 2.5313 48 1 -1.1359 -9.0163 2.2723 49 1 -0.5318 -2.8718 -0.9943 50 1 -0.7183 -2.1403 0.6599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700494315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:45 Heat of formation + Delta-G solvation = -5.554588 kcal Electronic energy + Delta-G solvation = -30130.222765 eV Core-core repulsion = 26123.872509 eV Total energy + Delta-G solvation = -4006.350256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.54640 -40.59402 -39.27079 -37.71470 -37.60116 -35.21573 -33.94460 -33.33195 -31.85405 -31.61703 -29.19870 -28.30483 -26.84456 -25.12850 -24.61726 -23.58323 -23.29612 -22.88064 -21.80872 -20.39537 -20.12273 -18.78823 -18.43484 -18.07039 -17.74668 -17.10221 -16.89261 -16.65927 -16.31090 -15.93856 -15.80148 -15.51092 -15.29491 -15.08673 -14.92755 -14.71862 -14.40192 -14.05527 -13.72392 -13.50713 -13.34067 -13.23758 -13.07147 -12.97315 -12.83079 -12.68138 -12.59847 -12.43235 -12.25349 -12.03857 -11.97772 -11.81570 -11.74940 -11.52397 -11.43193 -11.21168 -11.00740 -10.89450 -10.58502 -9.97817 -9.62605 -9.34428 -8.96848 -7.94504 -5.27181 0.43349 0.52765 1.44819 1.45902 1.55885 1.78184 2.19156 2.48537 2.76621 3.15068 3.19821 3.25881 3.40212 3.60167 3.64245 3.79068 3.98706 4.04726 4.07205 4.13452 4.18361 4.21615 4.28925 4.31797 4.36686 4.46806 4.48147 4.56604 4.68395 4.71362 4.72335 4.79407 4.82186 4.84538 4.99009 5.04404 5.13565 5.13775 5.17517 5.21440 5.22815 5.23280 5.27093 5.47185 5.60848 5.70628 5.74418 5.75362 5.89011 6.15921 6.73114 6.89705 6.90311 7.43279 7.55508 8.49080 9.22578 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019031 B = 0.002368 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.896899 B =11822.011791 C =12481.667919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.059 4.059 3 Si 0.977 3.023 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.235 4.235 8 H 0.078 0.922 9 N -0.633 5.633 10 C 0.121 3.879 11 C 0.159 3.841 12 C -0.090 4.090 13 C 0.094 3.906 14 O -0.593 6.593 15 N -0.707 5.707 16 C 0.513 3.487 17 O -0.568 6.568 18 C -0.095 4.095 19 C -0.070 4.070 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.134 4.134 23 C -0.062 4.062 24 C -0.136 4.136 25 C -0.176 4.176 26 C -0.158 4.158 27 C -0.115 4.115 28 C 0.172 3.828 29 H 0.251 0.749 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.396 0.604 37 H 0.416 0.584 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.096 0.904 48 H 0.124 0.876 49 H 0.038 0.962 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.664 -25.350 2.153 26.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.805 3.195 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.360 5.360 10 C -0.005 4.005 11 C 0.071 3.929 12 C -0.129 4.129 13 C 0.016 3.984 14 O -0.401 6.401 15 N -0.361 5.361 16 C 0.300 3.700 17 O -0.446 6.446 18 C -0.134 4.134 19 C -0.070 4.070 20 C -0.144 4.144 21 C -0.142 4.142 22 C -0.151 4.151 23 C -0.062 4.062 24 C -0.154 4.154 25 C -0.212 4.212 26 C -0.195 4.195 27 C -0.133 4.133 28 C 0.047 3.953 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.246 0.754 37 H 0.253 0.747 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.124 0.876 46 H 0.128 0.872 47 H 0.115 0.885 48 H 0.142 0.858 49 H 0.055 0.945 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.284 -25.079 2.547 25.980 hybrid contribution -0.180 1.469 -0.340 1.519 sum -6.464 -23.610 2.207 24.578 Atomic orbital electron populations 1.69938 1.06066 1.25758 1.57739 1.25544 0.96692 1.00482 1.02551 0.85034 0.78048 0.79474 0.76902 1.19521 1.21470 1.21744 1.19326 0.90622 0.83043 1.43357 0.90460 1.45998 1.03561 1.00156 1.86270 1.22943 0.96131 0.84182 0.97253 1.22109 0.93253 0.84972 0.92561 1.21179 0.97515 1.01486 0.92693 1.21941 0.95932 1.00047 0.80438 1.86447 1.35932 1.97326 1.20407 1.45976 1.36120 1.04297 1.49682 1.21144 0.84639 0.84720 0.79458 1.90713 1.27551 1.86675 1.39688 1.20746 1.00384 0.87829 1.04428 1.19462 0.97210 0.95392 0.94986 1.21230 0.96266 0.96273 1.00651 1.21342 0.99967 0.96394 0.96481 1.21228 0.97808 1.01065 0.95044 1.19312 0.96386 0.95423 0.95083 1.21072 1.06567 0.92255 0.95523 1.23154 0.95021 1.01281 1.01790 1.23072 0.97268 0.95751 1.03361 1.20945 1.00748 0.96056 0.95596 1.22468 0.87240 0.88747 0.96893 0.93965 0.94746 0.93726 0.91669 0.93431 0.93628 0.91963 0.75435 0.74675 0.85282 0.85316 0.85355 0.84363 0.84734 0.87219 0.88113 0.87553 0.87185 0.88507 0.85837 0.94479 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.53 11.39 21.65 0.25 -55.28 16 2 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 3 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.24 -13.48 10.70 84.03 0.90 -12.58 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.63 -33.02 3.55 -715.49 -2.54 -35.56 16 10 C 0.12 5.38 8.02 86.48 0.69 6.08 16 11 C 0.16 5.99 0.68 5.35 0.00 5.99 16 12 C -0.09 -3.59 4.68 30.60 0.14 -3.45 16 13 C 0.09 3.01 6.86 71.98 0.49 3.50 16 14 O -0.59 -18.56 13.66 -148.98 -2.04 -20.60 16 15 N -0.71 -19.27 4.52 -427.56 -1.93 -21.20 16 16 C 0.51 14.07 7.42 87.65 0.65 14.72 16 17 O -0.57 -21.18 14.22 -3.03 -0.04 -21.22 16 18 C -0.09 -1.69 5.83 29.10 0.17 -1.52 16 19 C -0.07 -1.55 4.37 -19.86 -0.09 -1.64 16 20 C -0.13 -2.75 9.70 22.27 0.22 -2.54 16 21 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 22 C -0.13 -2.68 9.30 22.27 0.21 -2.47 16 23 C -0.06 -1.33 5.61 -19.86 -0.11 -1.44 16 24 C -0.14 -2.37 6.04 -11.54 -0.07 -2.44 16 25 C -0.18 -2.43 9.86 30.60 0.30 -2.13 16 26 C -0.16 -2.03 10.16 30.60 0.31 -1.72 16 27 C -0.12 -2.60 9.39 22.27 0.21 -2.39 16 28 C 0.17 7.73 6.69 86.43 0.58 8.31 16 29 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.03 1.61 8.10 -2.39 -0.02 1.60 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.79 6.56 -2.39 -0.02 2.78 16 33 H 0.05 2.26 8.02 -2.39 -0.02 2.24 16 34 H 0.05 1.49 7.60 -2.39 -0.02 1.47 16 35 H 0.06 1.66 7.46 -2.39 -0.02 1.64 16 36 H 0.40 7.70 9.12 -74.06 -0.68 7.02 16 37 H 0.42 8.40 8.67 -92.71 -0.80 7.60 16 38 H 0.13 1.58 8.09 -2.39 -0.02 1.56 16 39 H 0.13 1.61 8.08 -2.39 -0.02 1.59 16 40 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 41 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 42 H 0.13 2.13 6.02 -2.91 -0.02 2.12 16 43 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.10 1.32 6.18 -2.39 -0.01 1.30 16 45 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.12 2.52 8.06 -2.91 -0.02 2.49 16 49 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.06 2.86 6.58 -2.39 -0.02 2.85 16 Total: -1.00 -76.83 408.71 0.51 -76.32 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -0.52 Total: 30.37 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 5.30 Total: -0.90 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -4.22 Total: -112.04 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -2.08 Total: -41.82 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -76.83 0.51 -76.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700494315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.768 kcal (2) G-P(sol) polarization free energy of solvation -76.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds