Wall clock time and date at job start Wed Apr 1 2020 02:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99959 * 2 1 4 4 H 1.48511 * 109.47232 * 270.00476 * 3 2 1 5 5 H 1.48506 * 109.47169 * 29.99955 * 3 2 1 6 6 H 1.48493 * 109.47293 * 150.00636 * 3 2 1 7 7 C 1.38807 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00068 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00210 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47137 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.52686 * 55.07324 * 11 10 9 13 13 C 1.53045 * 109.49129 * 294.99416 * 11 10 9 14 14 C 1.53045 * 109.53242 * 178.68354 * 13 11 10 15 15 C 1.53193 * 109.31307 * 61.36878 * 14 13 11 16 16 N 1.46920 * 108.77481 * 305.36313 * 15 14 13 17 17 C 1.34780 * 120.62959 * 233.58942 * 16 15 14 18 18 O 1.21282 * 119.99810 * 179.97438 * 17 16 15 19 19 C 1.50694 * 119.99897 * 359.97438 * 17 16 15 20 20 C 1.53001 * 109.47273 * 180.02562 * 19 17 16 21 21 H 1.09002 * 110.12892 * 304.75615 * 20 19 17 22 22 O 1.43943 * 110.15327 * 66.44976 * 20 19 17 23 23 C 1.43944 * 104.94666 * 147.57342 * 22 20 19 24 24 C 1.51086 * 105.95782 * 331.55296 * 23 22 20 25 25 C 1.37965 * 132.69324 * 197.64830 * 24 23 22 26 26 C 1.38291 * 119.92312 * 180.02562 * 25 24 23 27 27 C 1.38261 * 120.04002 * 359.97438 * 26 25 24 28 28 C 1.38295 * 120.04313 * 0.02562 * 27 26 25 29 29 C 1.37978 * 119.91695 * 359.97438 * 28 27 26 30 30 C 1.46924 * 118.73957 * 53.85921 * 16 15 14 31 31 H 0.96999 * 120.00432 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99972 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.47010 * 59.99632 * 10 9 7 34 34 H 1.09005 * 109.46783 * 299.99719 * 10 9 7 35 35 H 1.09000 * 109.45878 * 58.66688 * 13 11 10 36 36 H 1.09000 * 109.45267 * 298.69992 * 13 11 10 37 37 H 1.08991 * 109.49895 * 301.41323 * 14 13 11 38 38 H 1.09000 * 109.52024 * 181.33480 * 14 13 11 39 39 H 1.08993 * 109.58267 * 185.57269 * 15 14 13 40 40 H 1.09003 * 109.70274 * 65.21764 * 15 14 13 41 41 H 1.08997 * 109.47106 * 60.00240 * 19 17 16 42 42 H 1.09001 * 109.47375 * 299.99990 * 19 17 16 43 43 H 1.09004 * 110.15066 * 212.43688 * 23 22 20 44 44 H 1.08991 * 110.16188 * 90.68223 * 23 22 20 45 45 H 1.07999 * 120.03797 * 0.02562 * 25 24 23 46 46 H 1.08000 * 119.98481 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.98245 * 180.02562 * 27 26 25 48 48 H 1.07995 * 120.04395 * 179.70538 * 28 27 26 49 49 H 1.08994 * 109.59054 * 65.92976 * 30 16 15 50 50 H 1.09009 * 109.58773 * 186.35529 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4002 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.3804 -4.7143 -0.8437 13 6 0.2682 -4.8120 1.3061 14 6 -0.7493 -5.9552 1.2926 15 6 -0.0083 -7.2917 1.1854 16 7 0.8704 -7.2522 0.0087 17 6 0.8021 -8.2150 -0.9320 18 8 1.5327 -8.1708 -1.8991 19 6 -0.1820 -9.3463 -0.7822 20 6 -0.0551 -10.2942 -1.9765 21 1 -0.1804 -9.7425 -2.9082 22 8 1.2267 -10.9487 -1.9562 23 6 0.9884 -12.2494 -2.5248 24 6 -0.4518 -12.5821 -2.2120 25 6 -1.1588 -13.7667 -2.2087 26 6 -2.5003 -13.7685 -1.8725 27 6 -3.1320 -12.5846 -1.5396 28 6 -2.4233 -11.3970 -1.5428 29 6 -1.0849 -11.3952 -1.8782 30 6 1.8293 -6.1464 -0.1202 31 1 -0.4851 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6848 -3.7144 0.8894 34 1 2.6848 -3.7144 -0.8906 35 1 -0.2552 -3.8612 1.4071 36 1 0.9498 -4.9424 2.1467 37 1 -1.4156 -5.8391 0.4380 38 1 -1.3320 -5.9351 2.2136 39 1 -0.7296 -8.1015 1.0759 40 1 0.5893 -7.4536 2.0825 41 1 -1.1944 -8.9444 -0.7428 42 1 0.0286 -9.8916 0.1379 43 1 1.6512 -12.9854 -2.0696 44 1 1.1417 -12.2217 -3.6036 45 1 -0.6653 -14.6916 -2.4684 46 1 -3.0546 -14.6954 -1.8693 47 1 -4.1795 -12.5872 -1.2767 48 1 -2.9179 -10.4716 -1.2873 49 1 2.5740 -6.2142 0.6728 50 1 2.3209 -6.2003 -1.0916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713244561.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:25 Heat of formation + Delta-G solvation = -38.758413 kcal Electronic energy + Delta-G solvation = -29704.275262 eV Core-core repulsion = 25696.485180 eV Total energy + Delta-G solvation = -4007.790081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.23001 -40.00626 -37.88280 -37.33125 -34.93421 -33.20236 -32.58431 -31.66001 -31.64007 -30.61877 -29.70205 -26.82572 -25.52968 -25.26671 -24.23878 -22.76698 -22.00777 -21.86973 -21.25806 -19.87945 -18.85827 -17.64226 -17.09401 -16.92333 -16.45757 -16.39480 -15.94650 -15.46380 -15.26310 -14.69452 -14.63146 -14.33336 -14.15841 -14.03600 -13.79520 -13.52347 -13.32715 -13.16306 -13.07411 -12.99327 -12.59657 -12.48578 -12.36889 -12.11027 -11.94822 -11.74247 -11.62171 -11.28365 -11.00876 -10.88639 -10.80750 -10.58039 -10.32012 -10.28967 -10.15403 -9.99025 -9.74152 -9.60831 -9.32490 -8.96659 -8.84728 -8.51988 -6.88607 -5.74192 -3.02200 0.80017 0.89597 2.67549 2.97425 3.25658 3.45703 3.50823 3.52330 3.56486 3.79709 4.18317 4.43496 4.52242 4.57588 4.61958 4.65935 4.80139 4.89093 4.98220 5.00677 5.02787 5.08592 5.10216 5.15032 5.23686 5.32972 5.39700 5.44010 5.52504 5.55887 5.58947 5.60423 5.65526 5.88491 5.90478 5.92551 5.97277 6.02192 6.04167 6.13346 6.20488 6.25531 6.42767 6.49552 6.52971 6.59910 6.69596 6.83717 6.93859 7.44777 7.73126 8.22973 8.45066 9.56194 10.14407 10.49288 11.48873 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025187 B = 0.001894 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.430578 B =14781.645954 C =15233.817003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.159 3.841 11 C -0.106 4.106 12 H 0.073 0.927 13 C -0.112 4.112 14 C -0.135 4.135 15 C 0.107 3.893 16 N -0.611 5.611 17 C 0.515 3.485 18 O -0.530 6.530 19 C -0.136 4.136 20 C 0.139 3.861 21 H 0.094 0.906 22 O -0.339 6.339 23 C 0.087 3.913 24 C -0.128 4.128 25 C -0.096 4.096 26 C -0.116 4.116 27 C -0.116 4.116 28 C -0.091 4.091 29 C -0.125 4.125 30 C 0.119 3.881 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.127 0.873 49 H 0.066 0.934 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.938 -30.960 0.132 31.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.031 3.969 11 C -0.125 4.125 12 H 0.092 0.908 13 C -0.149 4.149 14 C -0.173 4.173 15 C -0.016 4.016 16 N -0.344 5.344 17 C 0.303 3.697 18 O -0.406 6.406 19 C -0.176 4.176 20 C 0.081 3.919 21 H 0.111 0.889 22 O -0.257 6.257 23 C 0.010 3.990 24 C -0.129 4.129 25 C -0.114 4.114 26 C -0.134 4.134 27 C -0.134 4.134 28 C -0.109 4.109 29 C -0.126 4.126 30 C -0.003 4.003 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.145 0.855 49 H 0.085 0.915 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.184 -30.724 -0.301 31.341 hybrid contribution -0.194 0.883 0.035 0.904 sum -6.378 -29.841 -0.266 30.516 Atomic orbital electron populations 1.69656 1.05091 1.25576 1.58051 1.24730 0.95538 0.97670 1.03188 0.86182 0.78630 0.83833 0.77510 1.21762 1.21816 1.20784 1.19246 0.91074 0.84183 1.42315 0.91185 1.42345 1.05822 0.99873 1.89449 1.20596 0.93069 0.85287 0.97950 1.21744 0.98262 0.94027 0.98489 0.90840 1.21532 0.97511 0.98651 0.97225 1.21948 0.98480 0.94525 1.02390 1.21778 0.93105 0.98612 0.88103 1.48122 1.38614 1.25118 1.22591 1.20373 0.84235 0.82705 0.82382 1.90726 1.43273 1.76219 1.30417 1.21843 1.00340 0.95301 1.00115 1.21052 0.81270 0.90888 0.98739 0.88884 1.89253 1.27147 1.25915 1.83405 1.21790 0.91840 0.86274 0.99088 1.21128 0.97146 0.94241 1.00346 1.20414 0.94138 0.96685 1.00143 1.21160 0.94371 0.98444 0.99376 1.21167 1.00069 0.92279 0.99878 1.20468 0.92288 0.98747 0.99414 1.21052 0.95200 0.95594 1.00725 1.21720 0.90686 0.84584 1.03310 0.93582 0.78248 0.96175 0.96177 0.90263 0.92081 0.91550 0.90859 0.90277 0.91300 0.87550 0.88063 0.88560 0.90421 0.85703 0.85469 0.85358 0.85524 0.91524 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.65 5.32 -59.91 -0.32 -18.97 16 10 C 0.16 3.26 5.65 -4.04 -0.02 3.23 16 11 C -0.11 -1.75 2.39 -90.27 -0.22 -1.96 16 12 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.11 -1.65 5.05 -26.68 -0.13 -1.79 16 14 C -0.14 -1.51 6.08 -26.61 -0.16 -1.67 16 15 C 0.11 1.05 6.34 -3.71 -0.02 1.02 16 16 N -0.61 -7.88 2.97 -172.51 -0.51 -8.39 16 17 C 0.52 7.09 7.60 -10.99 -0.08 7.01 16 18 O -0.53 -9.42 14.93 -6.37 -0.10 -9.52 16 19 C -0.14 -1.34 3.70 -27.89 -0.10 -1.44 16 20 C 0.14 1.50 2.85 -27.70 -0.08 1.42 16 21 H 0.09 1.10 7.98 -51.93 -0.41 0.69 16 22 O -0.34 -4.27 10.77 -47.16 -0.51 -4.78 16 23 C 0.09 0.78 7.63 36.19 0.28 1.06 16 24 C -0.13 -1.12 6.32 -104.40 -0.66 -1.78 16 25 C -0.10 -0.67 10.04 -39.66 -0.40 -1.07 16 26 C -0.12 -0.72 10.05 -39.55 -0.40 -1.11 16 27 C -0.12 -0.74 10.05 -39.55 -0.40 -1.13 16 28 C -0.09 -0.67 9.82 -39.66 -0.39 -1.06 16 29 C -0.13 -1.14 5.72 -104.40 -0.60 -1.74 16 30 C 0.12 1.77 5.75 -3.49 -0.02 1.75 16 31 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.38 10.21 6.85 -40.82 -0.28 9.93 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 1.39 7.15 -51.93 -0.37 1.02 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.57 5.93 -51.93 -0.31 0.26 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.11 0.78 7.49 -51.93 -0.39 0.39 16 42 H 0.10 0.88 7.94 -51.93 -0.41 0.47 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 46 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 47 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 48 H 0.13 0.71 7.93 -52.49 -0.42 0.29 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.09 1.52 7.00 -51.92 -0.36 1.15 16 LS Contribution 398.46 15.07 6.00 6.00 Total: -1.00 -34.83 398.46 -11.38 -46.21 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -8.00 Total: 6.17 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -3.65 Total: -6.69 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.11 Total: -55.07 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.60 Total: -14.29 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.83 -11.38 -46.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713244561.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.450 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds