Wall clock time and date at job start Wed Apr 1 2020 02:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99959 * 2 1 4 4 H 1.48511 * 109.47232 * 270.00476 * 3 2 1 5 5 H 1.48506 * 109.47169 * 29.99955 * 3 2 1 6 6 H 1.48493 * 109.47293 * 150.00636 * 3 2 1 7 7 C 1.38807 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00068 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00210 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47137 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.52686 * 55.07324 * 11 10 9 13 13 C 1.53045 * 109.49129 * 294.99416 * 11 10 9 14 14 C 1.53045 * 109.53242 * 178.68354 * 13 11 10 15 15 C 1.53193 * 109.31307 * 61.36878 * 14 13 11 16 16 N 1.46920 * 108.77481 * 305.36313 * 15 14 13 17 17 C 1.34780 * 120.62959 * 233.58942 * 16 15 14 18 18 O 1.21282 * 119.99810 * 179.97438 * 17 16 15 19 19 C 1.50694 * 119.99897 * 359.97438 * 17 16 15 20 20 C 1.53001 * 109.47273 * 180.02562 * 19 17 16 21 21 H 1.09002 * 110.12892 * 304.75615 * 20 19 17 22 22 O 1.43943 * 110.15327 * 66.44976 * 20 19 17 23 23 C 1.43944 * 104.94666 * 147.57342 * 22 20 19 24 24 C 1.51086 * 105.95782 * 331.55296 * 23 22 20 25 25 C 1.37965 * 132.69324 * 197.64830 * 24 23 22 26 26 C 1.38291 * 119.92312 * 180.02562 * 25 24 23 27 27 C 1.38261 * 120.04002 * 359.97438 * 26 25 24 28 28 C 1.38295 * 120.04313 * 0.02562 * 27 26 25 29 29 C 1.37978 * 119.91695 * 359.97438 * 28 27 26 30 30 C 1.46924 * 118.73957 * 53.85921 * 16 15 14 31 31 H 0.96999 * 120.00432 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99972 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.47010 * 59.99632 * 10 9 7 34 34 H 1.09005 * 109.46783 * 299.99719 * 10 9 7 35 35 H 1.09000 * 109.45878 * 58.66688 * 13 11 10 36 36 H 1.09000 * 109.45267 * 298.69992 * 13 11 10 37 37 H 1.08991 * 109.49895 * 301.41323 * 14 13 11 38 38 H 1.09000 * 109.52024 * 181.33480 * 14 13 11 39 39 H 1.08993 * 109.58267 * 185.57269 * 15 14 13 40 40 H 1.09003 * 109.70274 * 65.21764 * 15 14 13 41 41 H 1.08997 * 109.47106 * 60.00240 * 19 17 16 42 42 H 1.09001 * 109.47375 * 299.99990 * 19 17 16 43 43 H 1.09004 * 110.15066 * 212.43688 * 23 22 20 44 44 H 1.08991 * 110.16188 * 90.68223 * 23 22 20 45 45 H 1.07999 * 120.03797 * 0.02562 * 25 24 23 46 46 H 1.08000 * 119.98481 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.98245 * 180.02562 * 27 26 25 48 48 H 1.07995 * 120.04395 * 179.70538 * 28 27 26 49 49 H 1.08994 * 109.59054 * 65.92976 * 30 16 15 50 50 H 1.09009 * 109.58773 * 186.35529 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4002 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.3804 -4.7143 -0.8437 13 6 0.2682 -4.8120 1.3061 14 6 -0.7493 -5.9552 1.2926 15 6 -0.0083 -7.2917 1.1854 16 7 0.8704 -7.2522 0.0087 17 6 0.8021 -8.2150 -0.9320 18 8 1.5327 -8.1708 -1.8991 19 6 -0.1820 -9.3463 -0.7822 20 6 -0.0551 -10.2942 -1.9765 21 1 -0.1804 -9.7425 -2.9082 22 8 1.2267 -10.9487 -1.9562 23 6 0.9884 -12.2494 -2.5248 24 6 -0.4518 -12.5821 -2.2120 25 6 -1.1588 -13.7667 -2.2087 26 6 -2.5003 -13.7685 -1.8725 27 6 -3.1320 -12.5846 -1.5396 28 6 -2.4233 -11.3970 -1.5428 29 6 -1.0849 -11.3952 -1.8782 30 6 1.8293 -6.1464 -0.1202 31 1 -0.4851 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6848 -3.7144 0.8894 34 1 2.6848 -3.7144 -0.8906 35 1 -0.2552 -3.8612 1.4071 36 1 0.9498 -4.9424 2.1467 37 1 -1.4156 -5.8391 0.4380 38 1 -1.3320 -5.9351 2.2136 39 1 -0.7296 -8.1015 1.0759 40 1 0.5893 -7.4536 2.0825 41 1 -1.1944 -8.9444 -0.7428 42 1 0.0286 -9.8916 0.1379 43 1 1.6512 -12.9854 -2.0696 44 1 1.1417 -12.2217 -3.6036 45 1 -0.6653 -14.6916 -2.4684 46 1 -3.0546 -14.6954 -1.8693 47 1 -4.1795 -12.5872 -1.2767 48 1 -2.9179 -10.4716 -1.2873 49 1 2.5740 -6.2142 0.6728 50 1 2.3209 -6.2003 -1.0916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713244561.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:24 Heat of formation + Delta-G solvation = -59.662350 kcal Electronic energy + Delta-G solvation = -29705.181724 eV Core-core repulsion = 25696.485180 eV Total energy + Delta-G solvation = -4008.696544 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.94451 -41.01747 -38.90953 -38.18486 -36.60436 -34.53182 -33.65925 -32.92846 -32.23335 -31.83155 -30.87506 -27.77591 -27.01766 -26.23127 -25.18482 -24.34668 -23.10224 -22.52057 -22.06750 -21.17893 -19.86711 -19.21975 -18.42561 -17.68304 -17.33721 -17.19536 -16.76297 -16.54298 -16.27887 -16.07317 -15.72938 -15.57174 -15.33271 -15.18938 -14.93149 -14.69507 -14.49940 -14.10663 -13.99936 -13.77066 -13.70587 -13.60951 -13.41138 -13.14459 -13.08522 -12.80938 -12.75798 -12.65197 -12.22077 -12.16912 -12.06141 -11.94479 -11.79038 -11.71662 -11.55453 -11.37398 -11.05086 -10.93905 -10.77311 -9.83638 -9.62960 -9.54532 -9.01180 -7.96615 -5.25415 0.26768 0.39876 1.45975 1.48092 1.56520 1.63559 1.97295 2.55133 2.73967 2.85218 3.18590 3.36490 3.47439 3.65628 3.75443 3.78841 3.86553 3.95339 4.05662 4.07426 4.19521 4.23215 4.30237 4.37990 4.41477 4.42392 4.44467 4.51810 4.58444 4.63396 4.69466 4.76824 4.77749 4.81067 4.87243 4.89002 4.89860 4.97200 5.09961 5.19525 5.24618 5.39493 5.41167 5.45209 5.46379 5.50686 5.54397 5.55594 5.78585 6.01044 6.25623 6.43866 7.18422 7.32055 8.06942 8.31818 9.26909 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025187 B = 0.001894 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.430578 B =14781.645954 C =15233.817003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.248 4.248 8 H 0.074 0.926 9 N -0.741 5.741 10 C 0.158 3.842 11 C -0.091 4.091 12 H 0.052 0.948 13 C -0.108 4.108 14 C -0.127 4.127 15 C 0.105 3.895 16 N -0.610 5.610 17 C 0.509 3.491 18 O -0.581 6.581 19 C -0.125 4.125 20 C 0.136 3.864 21 H 0.069 0.931 22 O -0.371 6.371 23 C 0.081 3.919 24 C -0.144 4.144 25 C -0.102 4.102 26 C -0.116 4.116 27 C -0.118 4.118 28 C -0.096 4.096 29 C -0.141 4.141 30 C 0.128 3.872 31 H 0.252 0.748 32 H 0.375 0.625 33 H 0.028 0.972 34 H 0.011 0.989 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.137 0.863 42 H 0.121 0.879 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.143 0.857 46 H 0.153 0.847 47 H 0.153 0.847 48 H 0.144 0.856 49 H 0.080 0.920 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.291 -33.148 1.743 34.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.384 5.384 10 C 0.031 3.969 11 C -0.111 4.111 12 H 0.070 0.930 13 C -0.146 4.146 14 C -0.165 4.165 15 C -0.016 4.016 16 N -0.343 5.343 17 C 0.298 3.702 18 O -0.460 6.460 19 C -0.164 4.164 20 C 0.078 3.922 21 H 0.087 0.913 22 O -0.290 6.290 23 C 0.005 3.995 24 C -0.145 4.145 25 C -0.120 4.120 26 C -0.134 4.134 27 C -0.136 4.136 28 C -0.114 4.114 29 C -0.141 4.141 30 C 0.004 3.996 31 H 0.061 0.939 32 H 0.207 0.793 33 H 0.046 0.954 34 H 0.029 0.971 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.134 0.866 40 H 0.105 0.895 41 H 0.155 0.845 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.095 0.905 45 H 0.161 0.839 46 H 0.171 0.829 47 H 0.171 0.829 48 H 0.162 0.838 49 H 0.098 0.902 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.530 -32.946 1.335 33.822 hybrid contribution 0.239 1.494 -0.500 1.594 sum -7.290 -31.452 0.835 32.297 Atomic orbital electron populations 1.69811 1.06544 1.26115 1.59424 1.25573 0.96473 1.01089 1.03614 0.85119 0.77741 0.79384 0.77377 1.21591 1.21858 1.19430 1.19642 0.91503 0.85436 1.41375 0.90841 1.42515 1.05608 1.00927 1.89349 1.20728 0.93746 0.84945 0.97529 1.21544 0.97200 0.93432 0.98942 0.92989 1.21465 0.98120 0.98892 0.96078 1.21906 0.97527 0.93553 1.03559 1.22062 0.93439 0.98826 0.87281 1.48228 1.38477 1.24074 1.23495 1.21135 0.84183 0.83367 0.81480 1.90703 1.45391 1.77460 1.32475 1.21882 1.00481 0.93580 1.00505 1.20996 0.81511 0.91520 0.98156 0.91335 1.89205 1.28599 1.27514 1.83713 1.21923 0.93027 0.85398 0.99154 1.21201 0.96783 0.95054 1.01430 1.20708 0.94704 0.96754 0.99799 1.21546 0.94100 0.99617 0.98088 1.21533 1.01235 0.91840 0.98973 1.20743 0.91541 1.00111 0.99015 1.20967 0.95767 0.94808 1.02560 1.21450 0.91147 0.84465 1.02540 0.93940 0.79260 0.95448 0.97127 0.93504 0.91298 0.92167 0.88152 0.86624 0.89534 0.84526 0.86132 0.87236 0.90451 0.83902 0.82922 0.82886 0.83789 0.90170 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.02 13.06 21.65 0.28 -59.74 16 2 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 3 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 4 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 8 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -38.95 5.32 -343.45 -1.83 -40.78 16 10 C 0.16 6.63 5.65 86.38 0.49 7.12 16 11 C -0.09 -3.09 2.39 -10.57 -0.03 -3.12 16 12 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 13 C -0.11 -3.14 5.05 30.62 0.15 -2.99 16 14 C -0.13 -2.54 6.08 30.67 0.19 -2.35 16 15 C 0.11 1.71 6.34 86.36 0.55 2.26 16 16 N -0.61 -15.03 2.97 -818.09 -2.43 -17.45 16 17 C 0.51 13.82 7.60 87.65 0.67 14.49 16 18 O -0.58 -21.55 14.93 8.37 0.13 -21.42 16 19 C -0.13 -2.24 3.70 29.85 0.11 -2.13 16 20 C 0.14 2.95 2.85 29.97 0.09 3.04 16 21 H 0.07 1.75 7.98 -2.39 -0.02 1.73 16 22 O -0.37 -9.63 10.77 -137.57 -1.48 -11.11 16 23 C 0.08 1.49 7.63 71.36 0.54 2.04 16 24 C -0.14 -2.39 6.32 -19.72 -0.12 -2.52 16 25 C -0.10 -1.21 10.04 22.22 0.22 -0.99 16 26 C -0.12 -1.08 10.05 22.29 0.22 -0.85 16 27 C -0.12 -1.11 10.05 22.29 0.22 -0.89 16 28 C -0.10 -1.18 9.82 22.22 0.22 -0.96 16 29 C -0.14 -2.40 5.72 -19.72 -0.11 -2.51 16 30 C 0.13 3.80 5.75 86.51 0.50 4.30 16 31 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.37 20.74 6.85 -92.70 -0.63 20.11 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.05 1.68 7.15 -2.39 -0.02 1.66 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.12 1.10 5.93 -2.39 -0.01 1.08 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.14 1.57 7.49 -2.39 -0.02 1.55 16 42 H 0.12 1.73 7.94 -2.39 -0.02 1.71 16 43 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.14 1.07 8.06 -2.91 -0.02 1.04 16 46 H 0.15 0.59 8.06 -2.91 -0.02 0.56 16 47 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 48 H 0.14 1.15 7.93 -2.91 -0.02 1.12 16 49 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.07 2.36 7.00 -2.38 -0.02 2.35 16 Total: -1.00 -78.81 398.46 2.21 -76.60 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.30 Total: 28.30 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 5.21 Total: -3.46 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -3.97 Total: -117.97 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -1.36 Total: -32.54 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -78.81 2.21 -76.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713244561.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.937 kcal (2) G-P(sol) polarization free energy of solvation -78.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds