Wall clock time and date at job start Wed Apr 1 2020 02:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99811 * 2 1 4 4 H 1.48497 * 109.47641 * 270.00027 * 3 2 1 5 5 H 1.48502 * 109.47153 * 30.00469 * 3 2 1 6 6 H 1.48504 * 109.46943 * 150.00139 * 3 2 1 7 7 C 1.38809 * 120.00449 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00856 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99634 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00080 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47453 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.49750 * 55.06592 * 11 10 9 13 13 C 1.53040 * 109.49583 * 295.00173 * 11 10 9 14 14 C 1.53046 * 109.53687 * 178.64861 * 13 11 10 15 15 C 1.53187 * 109.31292 * 61.36594 * 14 13 11 16 16 N 1.46923 * 108.77548 * 305.36713 * 15 14 13 17 17 C 1.34778 * 120.63151 * 233.58336 * 16 15 14 18 18 O 1.21282 * 120.00184 * 179.97438 * 17 16 15 19 19 C 1.50707 * 119.99662 * 0.02562 * 17 16 15 20 20 C 1.52999 * 109.46945 * 179.97438 * 19 17 16 21 21 H 1.09000 * 110.13176 * 53.29681 * 20 19 17 22 22 O 1.43943 * 110.21482 * 291.56068 * 20 19 17 23 23 C 1.43938 * 104.94966 * 212.40134 * 22 20 19 24 24 C 1.51083 * 105.95717 * 28.44527 * 23 22 20 25 25 C 1.37970 * 132.68917 * 162.30885 * 24 23 22 26 26 C 1.38287 * 119.91735 * 180.02562 * 25 24 23 27 27 C 1.38260 * 120.04385 * 359.67559 * 26 25 24 28 28 C 1.38292 * 120.04096 * 0.62810 * 27 26 25 29 29 C 1.37968 * 119.91531 * 359.39103 * 28 27 26 30 30 C 1.46922 * 118.74124 * 53.85799 * 16 15 14 31 31 H 0.96994 * 120.00110 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00106 * 359.97438 * 9 7 2 33 33 H 1.09009 * 109.47059 * 60.00214 * 10 9 7 34 34 H 1.08998 * 109.47365 * 300.00150 * 10 9 7 35 35 H 1.09005 * 109.46224 * 58.63156 * 13 11 10 36 36 H 1.09000 * 109.45287 * 298.66345 * 13 11 10 37 37 H 1.08998 * 109.49529 * 301.41133 * 14 13 11 38 38 H 1.08997 * 109.52295 * 181.33602 * 14 13 11 39 39 H 1.09000 * 109.58863 * 185.57763 * 15 14 13 40 40 H 1.09003 * 109.58532 * 65.15226 * 15 14 13 41 41 H 1.08992 * 109.47083 * 60.00061 * 19 17 16 42 42 H 1.08995 * 109.46819 * 299.99422 * 19 17 16 43 43 H 1.09000 * 110.15105 * 147.56940 * 23 22 20 44 44 H 1.08999 * 110.15553 * 269.31954 * 23 22 20 45 45 H 1.08002 * 120.03543 * 359.97438 * 25 24 23 46 46 H 1.08011 * 119.97707 * 180.02562 * 26 25 24 47 47 H 1.08000 * 119.97860 * 180.29810 * 27 26 25 48 48 H 1.08002 * 120.04496 * 179.67832 * 28 27 26 49 49 H 1.09006 * 109.58802 * 65.92592 * 30 16 15 50 50 H 1.09002 * 109.58813 * 186.35171 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0639 -4.8197 -0.0008 12 1 0.3794 -4.7137 -0.8423 13 6 0.2701 -4.8120 1.3076 14 6 -0.7479 -5.9547 1.2953 15 6 -0.0078 -7.2915 1.1867 16 7 0.8693 -7.2520 0.0086 17 6 0.7993 -8.2146 -0.9322 18 8 1.5286 -8.1705 -1.9003 19 6 -0.1859 -9.3450 -0.7818 20 6 -0.0618 -10.2921 -1.9770 21 1 0.9740 -10.6089 -2.0986 22 8 -0.5262 -9.6439 -3.1754 23 6 -1.0936 -10.6996 -3.9725 24 6 -1.5812 -11.7426 -2.9942 25 6 -2.4648 -12.7955 -3.1124 26 6 -2.7251 -13.6034 -2.0207 27 6 -2.0956 -13.3604 -0.8139 28 6 -1.2146 -12.3012 -0.6936 29 6 -0.9552 -11.4949 -1.7827 30 6 1.8285 -6.1467 -0.1213 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 0.0002 33 1 2.6855 -3.7149 0.8879 34 1 2.6841 -3.7141 -0.8921 35 1 -0.2527 -3.8610 1.4096 36 1 0.9528 -4.9430 2.1472 37 1 -1.4155 -5.8380 0.4416 38 1 -1.3293 -5.9345 2.2170 39 1 -0.7296 -8.1010 1.0779 40 1 0.5913 -7.4514 2.0831 41 1 -1.1978 -8.9421 -0.7415 42 1 0.0249 -9.8906 0.1379 43 1 -1.9276 -10.3184 -4.5618 44 1 -0.3337 -11.1255 -4.6277 45 1 -2.9532 -12.9880 -4.0563 46 1 -3.4164 -14.4283 -2.1123 47 1 -2.2960 -13.9950 0.0367 48 1 -0.7268 -12.1082 0.2504 49 1 2.5743 -6.2151 0.6707 50 1 2.3187 -6.2006 -1.0933 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713244562.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:28 Heat of formation + Delta-G solvation = -60.076601 kcal Electronic energy + Delta-G solvation = -29750.495771 eV Core-core repulsion = 25741.781263 eV Total energy + Delta-G solvation = -4008.714507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.94596 -41.01870 -38.91167 -38.19335 -36.60654 -34.53430 -33.66286 -32.93449 -32.23664 -31.83282 -30.87323 -27.78067 -27.02054 -26.23364 -25.18522 -24.34863 -23.11202 -22.52343 -22.06935 -21.16215 -19.89494 -19.21854 -18.42270 -17.68422 -17.35030 -17.17893 -16.76772 -16.56773 -16.26253 -16.10946 -15.70031 -15.53908 -15.31031 -15.24957 -14.93415 -14.69248 -14.50207 -14.25694 -13.82271 -13.78187 -13.70043 -13.61966 -13.41681 -13.17811 -13.08296 -12.80386 -12.73057 -12.68158 -12.20850 -12.17449 -12.07381 -11.94734 -11.78711 -11.72134 -11.56009 -11.38014 -11.05368 -10.94228 -10.78071 -9.83225 -9.62612 -9.54516 -9.01628 -7.96749 -5.25815 0.26999 0.40238 1.45562 1.48060 1.56372 1.62381 1.98668 2.54938 2.74350 2.85478 3.18785 3.36300 3.47062 3.65390 3.74862 3.78961 3.86567 3.94758 4.05780 4.07723 4.19448 4.23489 4.30792 4.38860 4.40757 4.40936 4.43826 4.50730 4.58395 4.63494 4.70016 4.76801 4.78594 4.79154 4.87528 4.88519 4.89628 4.96265 5.10282 5.18685 5.24140 5.39379 5.41585 5.45344 5.46085 5.50258 5.54312 5.55715 5.79150 6.01402 6.25303 6.43910 7.18304 7.31516 8.06625 8.31128 9.26877 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.001925 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.253641 B =14542.369580 C =14857.187632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.742 5.742 10 C 0.158 3.842 11 C -0.093 4.093 12 H 0.046 0.954 13 C -0.107 4.107 14 C -0.130 4.130 15 C 0.106 3.894 16 N -0.610 5.610 17 C 0.508 3.492 18 O -0.582 6.582 19 C -0.126 4.126 20 C 0.135 3.865 21 H 0.075 0.925 22 O -0.376 6.376 23 C 0.080 3.920 24 C -0.146 4.146 25 C -0.103 4.103 26 C -0.116 4.116 27 C -0.117 4.117 28 C -0.094 4.094 29 C -0.140 4.140 30 C 0.128 3.872 31 H 0.252 0.748 32 H 0.374 0.626 33 H 0.030 0.970 34 H 0.010 0.990 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.145 0.855 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.141 0.859 46 H 0.153 0.847 47 H 0.156 0.844 48 H 0.149 0.851 49 H 0.086 0.914 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.004 -34.001 2.806 34.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.379 4.379 8 H 0.093 0.907 9 N -0.385 5.385 10 C 0.031 3.969 11 C -0.113 4.113 12 H 0.064 0.936 13 C -0.144 4.144 14 C -0.168 4.168 15 C -0.015 4.015 16 N -0.343 5.343 17 C 0.298 3.702 18 O -0.461 6.461 19 C -0.165 4.165 20 C 0.078 3.922 21 H 0.092 0.908 22 O -0.295 6.295 23 C 0.004 3.996 24 C -0.146 4.146 25 C -0.121 4.121 26 C -0.134 4.134 27 C -0.135 4.135 28 C -0.112 4.112 29 C -0.140 4.140 30 C 0.004 3.996 31 H 0.060 0.940 32 H 0.206 0.794 33 H 0.048 0.952 34 H 0.028 0.972 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.119 0.881 39 H 0.132 0.868 40 H 0.113 0.887 41 H 0.131 0.869 42 H 0.163 0.837 43 H 0.123 0.877 44 H 0.097 0.903 45 H 0.158 0.842 46 H 0.170 0.830 47 H 0.173 0.827 48 H 0.167 0.833 49 H 0.104 0.896 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.441 -33.653 2.260 34.338 hybrid contribution 0.175 1.503 -0.595 1.626 sum -6.266 -32.149 1.665 32.797 Atomic orbital electron populations 1.69819 1.06610 1.26119 1.59460 1.25599 0.96474 1.01178 1.03632 0.85101 0.77754 0.79296 0.77368 1.21624 1.21879 1.19300 1.19653 0.91528 0.85398 1.41328 0.90724 1.42533 1.05594 1.01003 1.89353 1.20730 0.93698 0.84855 0.97606 1.21553 0.97226 0.93743 0.98776 0.93586 1.21455 0.98101 0.98730 0.96141 1.21916 0.97604 0.94013 1.03264 1.22077 0.93507 0.98562 0.87394 1.48236 1.38495 1.24105 1.23428 1.21149 0.83947 0.83816 0.81276 1.90701 1.45760 1.77786 1.31883 1.21894 0.99971 0.94521 1.00091 1.21040 0.96580 0.89253 0.85359 0.90775 1.89217 1.78811 1.30677 1.30834 1.21913 0.98415 0.86287 0.92957 1.21184 0.99053 0.98422 0.95972 1.20702 0.96979 0.93846 1.00592 1.21546 0.99778 0.99586 0.92507 1.21549 0.95977 0.97132 0.98837 1.20757 0.98330 0.94295 0.97794 1.20983 0.98980 0.98170 0.95894 1.21460 0.91134 0.84316 1.02655 0.93955 0.79360 0.95165 0.97156 0.93709 0.90865 0.92947 0.88105 0.86754 0.88735 0.86909 0.83687 0.87725 0.90300 0.84156 0.82972 0.82669 0.83301 0.89572 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 3 Si 0.98 47.33 29.55 68.60 2.03 49.36 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 8 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.74 -39.45 5.32 -343.45 -1.83 -41.27 16 10 C 0.16 6.70 5.66 86.38 0.49 7.19 16 11 C -0.09 -3.22 2.39 -10.57 -0.03 -3.24 16 12 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 13 C -0.11 -3.16 5.05 30.62 0.15 -3.01 16 14 C -0.13 -2.73 6.08 30.67 0.19 -2.54 16 15 C 0.11 1.70 6.34 86.36 0.55 2.24 16 16 N -0.61 -14.92 2.97 -818.07 -2.43 -17.35 16 17 C 0.51 13.76 7.62 87.66 0.67 14.43 16 18 O -0.58 -21.53 14.98 5.56 0.08 -21.45 16 19 C -0.13 -2.24 3.71 29.85 0.11 -2.13 16 20 C 0.14 2.93 2.84 29.97 0.09 3.02 16 21 H 0.07 1.80 7.92 -2.39 -0.02 1.78 16 22 O -0.38 -10.40 10.90 -140.38 -1.53 -11.93 16 23 C 0.08 1.60 7.63 71.36 0.54 2.15 16 24 C -0.15 -2.53 6.32 -19.72 -0.12 -2.65 16 25 C -0.10 -1.31 10.04 22.22 0.22 -1.08 16 26 C -0.12 -1.09 10.05 22.29 0.22 -0.87 16 27 C -0.12 -1.03 10.05 22.29 0.22 -0.81 16 28 C -0.09 -1.06 9.78 22.22 0.22 -0.84 16 29 C -0.14 -2.36 5.72 -19.72 -0.11 -2.47 16 30 C 0.13 3.78 5.75 86.51 0.50 4.28 16 31 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.37 21.06 6.85 -92.71 -0.63 20.42 16 33 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.04 1.64 7.15 -2.38 -0.02 1.62 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.11 1.10 5.93 -2.39 -0.01 1.09 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.11 1.84 7.69 -2.39 -0.02 1.82 16 42 H 0.15 1.35 7.62 -2.39 -0.02 1.33 16 43 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 46 H 0.15 0.61 8.06 -2.90 -0.02 0.59 16 47 H 0.16 0.49 8.06 -2.91 -0.02 0.46 16 48 H 0.15 0.88 7.86 -2.91 -0.02 0.85 16 49 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 50 H 0.07 2.33 7.00 -2.39 -0.02 2.31 16 Total: -1.00 -80.39 398.36 2.13 -78.26 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.30 Total: 28.74 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 5.21 Total: -3.91 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -3.97 Total: -119.07 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.45 Total: -33.38 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -80.39 2.13 -78.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713244562.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.187 kcal (2) G-P(sol) polarization free energy of solvation -80.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds