Wall clock time and date at job start Wed Apr 1 2020 03:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00046 * 2 1 4 4 H 1.48503 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47032 * 299.99931 * 3 2 1 6 6 H 1.48498 * 109.47158 * 60.00260 * 3 2 1 7 7 C 1.38817 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99789 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47267 * 179.97438 * 10 9 7 12 12 C 1.50692 * 109.47432 * 180.02562 * 11 10 9 13 13 C 1.38236 * 120.00381 * 89.99717 * 12 11 10 14 14 C 1.38233 * 120.00356 * 179.97438 * 13 12 11 15 15 C 1.38231 * 120.00197 * 0.02729 * 14 13 12 16 16 C 1.50699 * 120.00136 * 179.97438 * 15 14 13 17 17 N 1.46493 * 109.47567 * 89.99458 * 16 15 14 18 18 C 1.34775 * 120.00177 * 179.97438 * 17 16 15 19 19 O 1.21287 * 119.99487 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00061 * 180.02562 * 18 17 16 21 21 H 1.08997 * 115.57348 * 34.17999 * 20 18 17 22 22 C 1.53265 * 117.52686 * 248.26512 * 20 18 17 23 23 C 1.51772 * 117.52804 * 180.02562 * 20 18 17 24 24 C 1.53686 * 122.36466 * 219.13119 * 23 20 18 25 25 C 1.54366 * 103.79831 * 163.03630 * 24 23 20 26 26 O 1.43845 * 107.31119 * 2.74930 * 25 24 23 27 27 C 1.44613 * 107.22149 * 333.86278 * 26 25 24 28 28 C 1.38241 * 119.99614 * 0.24961 * 15 14 13 29 29 C 1.38234 * 120.00123 * 359.47591 * 28 15 14 30 30 H 0.97002 * 119.99594 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00640 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.46635 * 60.00241 * 10 9 7 33 33 H 1.08996 * 109.47239 * 300.00497 * 10 9 7 34 34 H 1.08999 * 109.46689 * 59.99794 * 11 10 9 35 35 H 1.08996 * 109.47460 * 300.00440 * 11 10 9 36 36 H 1.08005 * 119.99549 * 359.97438 * 13 12 11 37 37 H 1.08002 * 119.99416 * 180.02562 * 14 13 12 38 38 H 1.08996 * 109.46564 * 329.99366 * 16 15 14 39 39 H 1.09008 * 109.46704 * 209.99946 * 16 15 14 40 40 H 0.97000 * 120.00010 * 0.02562 * 17 16 15 41 41 H 1.09000 * 117.52762 * 145.21071 * 22 20 18 42 42 H 1.09001 * 117.53193 * 359.97438 * 22 20 18 43 43 H 1.08999 * 110.55781 * 44.46195 * 24 23 20 44 44 H 1.08998 * 110.68562 * 281.67751 * 24 23 20 45 45 H 1.09005 * 109.87748 * 243.32233 * 25 24 23 46 46 H 1.09001 * 109.87996 * 122.17795 * 25 24 23 47 47 H 1.09004 * 110.63939 * 157.09387 * 27 26 25 48 48 H 1.08993 * 110.64497 * 280.15798 * 27 26 25 49 49 H 1.08002 * 119.99599 * 179.73069 * 28 15 14 50 50 H 1.08000 * 120.00213 * 180.29600 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8198 0.0001 12 6 1.8171 -6.1248 0.0007 13 6 2.1629 -6.7229 1.1982 14 6 2.8535 -7.9203 1.1987 15 6 3.1990 -8.5195 0.0019 16 6 3.9524 -9.8247 0.0026 17 7 3.0005 -10.9381 0.0033 18 6 3.4497 -12.2088 0.0035 19 8 4.6422 -12.4303 0.0035 20 6 2.4705 -13.3542 0.0037 21 1 1.5465 -13.1834 -0.5486 22 6 2.3928 -14.2195 1.2664 23 6 3.0376 -14.7620 0.0045 24 6 2.4113 -15.9017 -0.8145 25 6 3.5221 -16.9725 -0.8648 26 8 4.6248 -16.4824 -0.0818 27 6 4.5482 -15.0384 -0.0910 28 6 2.8583 -7.9186 -1.1955 29 6 2.1627 -6.7241 -1.1961 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6846 -3.7145 0.8896 33 1 2.6847 -3.7146 -0.8904 34 1 0.4368 -4.7621 -0.8896 35 1 0.4374 -4.7618 0.8902 36 1 1.8933 -6.2544 2.1333 37 1 3.1232 -8.3876 2.1343 38 1 4.5792 -9.8818 0.8925 39 1 4.5790 -9.8828 -0.8875 40 1 2.0468 -10.7609 0.0030 41 1 1.4172 -14.6178 1.5449 42 1 3.0504 -13.9602 2.0961 43 1 2.1635 -15.5597 -1.8193 44 1 1.5250 -16.2928 -0.3149 45 1 3.8401 -17.1284 -1.8957 46 1 3.1547 -17.9079 -0.4428 47 1 5.0704 -14.6204 0.7696 48 1 4.9541 -14.6380 -1.0199 49 1 3.1321 -8.3846 -2.1306 50 1 1.8923 -6.2570 -2.1317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713385652.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:52 Heat of formation + Delta-G solvation = -27.778987 kcal Electronic energy + Delta-G solvation = -27975.033096 eV Core-core repulsion = 23967.719118 eV Total energy + Delta-G solvation = -4007.313978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.02297 -39.77780 -39.04571 -36.40368 -35.74326 -34.78376 -32.84436 -31.07102 -30.98611 -30.81877 -28.78988 -27.76325 -26.09574 -24.29193 -23.26669 -23.04511 -22.77736 -21.61759 -20.95492 -20.53942 -19.94060 -17.74976 -17.19568 -16.84446 -16.49299 -15.99360 -15.96221 -15.70846 -15.43652 -15.19495 -14.93778 -14.66228 -14.55298 -13.89322 -13.66743 -13.58734 -13.49656 -13.37205 -13.30039 -12.85039 -12.71275 -12.65696 -12.55069 -12.37328 -11.96299 -11.51789 -11.26675 -11.23597 -11.13241 -11.00443 -10.91934 -10.71508 -10.63456 -10.54340 -10.25210 -10.05698 -9.94915 -9.74397 -9.45524 -8.97834 -8.88680 -8.60666 -6.94922 -5.78793 -3.07732 1.14212 1.36474 2.04372 2.72589 3.17015 3.42149 3.47919 3.50174 3.60162 3.73879 3.82487 4.12592 4.21992 4.36287 4.43433 4.55515 4.58391 4.61747 4.71268 4.87620 4.93466 4.95708 5.00116 5.08687 5.14334 5.23543 5.28527 5.35532 5.40372 5.44523 5.46530 5.48443 5.50368 5.57844 5.66727 5.73165 5.82193 5.87765 6.00941 6.04238 6.16925 6.24804 6.41506 6.44917 6.47732 6.57823 6.78587 6.90000 6.95526 7.11030 7.69063 7.81748 8.40099 9.51372 10.08410 10.43353 11.44212 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.042557 B = 0.001339 C = 0.001328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.784484 B =20913.048555 C =21085.989145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.161 3.839 11 C -0.095 4.095 12 C -0.051 4.051 13 C -0.118 4.118 14 C -0.098 4.098 15 C -0.128 4.128 16 C 0.166 3.834 17 N -0.719 5.719 18 C 0.541 3.459 19 O -0.538 6.538 20 C -0.173 4.173 21 H 0.128 0.872 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.121 4.121 25 C 0.049 3.951 26 O -0.382 6.382 27 C 0.097 3.903 28 C -0.098 4.098 29 C -0.118 4.118 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.404 0.596 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.072 0.928 49 H 0.120 0.880 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.291 -34.231 -0.519 34.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.379 5.379 10 C 0.033 3.967 11 C -0.132 4.132 12 C -0.052 4.052 13 C -0.136 4.136 14 C -0.117 4.117 15 C -0.129 4.129 16 C 0.043 3.957 17 N -0.370 5.370 18 C 0.327 3.673 19 O -0.415 6.415 20 C -0.194 4.194 21 H 0.146 0.854 22 C -0.164 4.164 23 C -0.134 4.134 24 C -0.159 4.159 25 C -0.028 4.028 26 O -0.301 6.301 27 C 0.021 3.979 28 C -0.117 4.117 29 C -0.136 4.136 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.238 0.762 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.119 0.881 48 H 0.090 0.910 49 H 0.138 0.862 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.483 -34.387 -0.422 34.565 hybrid contribution -0.662 1.406 -0.218 1.569 sum 2.821 -32.981 -0.640 33.107 Atomic orbital electron populations 1.69671 1.05129 1.25562 1.57895 1.24747 0.95543 0.97721 1.02994 0.86108 0.78821 0.84025 0.77210 1.20516 1.21828 1.21820 1.19288 0.91109 0.84117 1.42557 0.91103 1.42378 1.05887 1.00001 1.89593 1.20587 0.93111 0.84910 0.98066 1.20876 0.98124 0.91049 1.03195 1.20094 0.96328 0.95815 0.92939 1.21130 0.98977 0.95385 0.98126 1.21009 0.97920 0.95552 0.97182 1.19690 1.02531 0.96842 0.93813 1.20171 0.90531 0.81949 1.03033 1.46052 1.10778 1.05068 1.75090 1.19619 0.88633 0.83177 0.75823 1.90709 1.16559 1.84557 1.49704 1.22133 1.01279 0.90425 1.05577 0.85436 1.22934 1.02928 0.99852 0.90719 1.22073 0.97515 0.92821 1.00962 1.22392 0.98981 0.94083 1.00394 1.23146 0.86384 0.97200 0.96033 1.88940 1.48167 1.20480 1.72480 1.22898 0.91792 0.79885 1.03324 1.21011 0.97923 0.95591 0.97171 1.21129 0.98948 0.95419 0.98131 0.93550 0.78284 0.96243 0.96238 0.90767 0.90768 0.85681 0.86179 0.90642 0.90643 0.76187 0.87241 0.87647 0.89960 0.89976 0.92268 0.89800 0.88130 0.91021 0.86196 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.70 5.60 -59.91 -0.34 -19.04 16 10 C 0.16 3.24 6.24 -4.04 -0.03 3.21 16 11 C -0.09 -1.49 5.46 -27.89 -0.15 -1.64 16 12 C -0.05 -0.68 5.13 -104.63 -0.54 -1.21 16 13 C -0.12 -1.41 9.70 -39.58 -0.38 -1.80 16 14 C -0.10 -1.00 9.70 -39.59 -0.38 -1.38 16 15 C -0.13 -1.23 5.25 -104.62 -0.55 -1.78 16 16 C 0.17 1.43 5.80 -5.20 -0.03 1.40 16 17 N -0.72 -5.32 5.55 -61.48 -0.34 -5.66 16 18 C 0.54 4.67 7.61 -10.99 -0.08 4.59 16 19 O -0.54 -6.40 13.96 5.55 0.08 -6.33 16 20 C -0.17 -1.05 6.10 -92.26 -0.56 -1.61 16 21 H 0.13 0.52 8.14 -51.93 -0.42 0.09 16 22 C -0.13 -0.70 10.04 -27.23 -0.27 -0.98 16 23 C -0.13 -0.90 2.39 -154.97 -0.37 -1.27 16 24 C -0.12 -0.62 6.85 -25.66 -0.18 -0.79 16 25 C 0.05 0.31 7.72 37.87 0.29 0.61 16 26 O -0.38 -3.76 11.52 -35.23 -0.41 -4.17 16 27 C 0.10 0.89 5.66 37.60 0.21 1.10 16 28 C -0.10 -1.00 9.70 -39.58 -0.38 -1.39 16 29 C -0.12 -1.41 9.70 -39.58 -0.38 -1.80 16 30 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 31 H 0.38 10.15 7.67 -40.82 -0.31 9.84 16 32 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 35 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 36 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.08 0.69 8.08 -51.92 -0.42 0.27 16 40 H 0.40 2.29 8.46 -40.82 -0.35 1.95 16 41 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.10 1.02 7.52 -51.93 -0.39 0.63 16 48 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 49 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 50 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 414.57 15.07 6.25 6.25 Total: -1.00 -33.37 414.57 -11.27 -44.64 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -8.18 Total: 6.57 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -4.04 Total: -12.17 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.05 Total: -52.21 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.33 Total: -10.49 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.37 -11.27 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713385652.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.862 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds