Wall clock time and date at job start Wed Apr 1 2020 03:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00046 * 2 1 4 4 H 1.48503 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47032 * 299.99931 * 3 2 1 6 6 H 1.48498 * 109.47158 * 60.00260 * 3 2 1 7 7 C 1.38817 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99789 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47267 * 179.97438 * 10 9 7 12 12 C 1.50692 * 109.47432 * 180.02562 * 11 10 9 13 13 C 1.38236 * 120.00381 * 89.99717 * 12 11 10 14 14 C 1.38233 * 120.00356 * 179.97438 * 13 12 11 15 15 C 1.38231 * 120.00197 * 0.02729 * 14 13 12 16 16 C 1.50699 * 120.00136 * 179.97438 * 15 14 13 17 17 N 1.46493 * 109.47567 * 89.99458 * 16 15 14 18 18 C 1.34775 * 120.00177 * 179.97438 * 17 16 15 19 19 O 1.21287 * 119.99487 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00061 * 180.02562 * 18 17 16 21 21 H 1.08997 * 115.57348 * 34.17999 * 20 18 17 22 22 C 1.53265 * 117.52686 * 248.26512 * 20 18 17 23 23 C 1.51772 * 117.52804 * 180.02562 * 20 18 17 24 24 C 1.53686 * 122.36466 * 219.13119 * 23 20 18 25 25 C 1.54366 * 103.79831 * 163.03630 * 24 23 20 26 26 O 1.43845 * 107.31119 * 2.74930 * 25 24 23 27 27 C 1.44613 * 107.22149 * 333.86278 * 26 25 24 28 28 C 1.38241 * 119.99614 * 0.24961 * 15 14 13 29 29 C 1.38234 * 120.00123 * 359.47591 * 28 15 14 30 30 H 0.97002 * 119.99594 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00640 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.46635 * 60.00241 * 10 9 7 33 33 H 1.08996 * 109.47239 * 300.00497 * 10 9 7 34 34 H 1.08999 * 109.46689 * 59.99794 * 11 10 9 35 35 H 1.08996 * 109.47460 * 300.00440 * 11 10 9 36 36 H 1.08005 * 119.99549 * 359.97438 * 13 12 11 37 37 H 1.08002 * 119.99416 * 180.02562 * 14 13 12 38 38 H 1.08996 * 109.46564 * 329.99366 * 16 15 14 39 39 H 1.09008 * 109.46704 * 209.99946 * 16 15 14 40 40 H 0.97000 * 120.00010 * 0.02562 * 17 16 15 41 41 H 1.09000 * 117.52762 * 145.21071 * 22 20 18 42 42 H 1.09001 * 117.53193 * 359.97438 * 22 20 18 43 43 H 1.08999 * 110.55781 * 44.46195 * 24 23 20 44 44 H 1.08998 * 110.68562 * 281.67751 * 24 23 20 45 45 H 1.09005 * 109.87748 * 243.32233 * 25 24 23 46 46 H 1.09001 * 109.87996 * 122.17795 * 25 24 23 47 47 H 1.09004 * 110.63939 * 157.09387 * 27 26 25 48 48 H 1.08993 * 110.64497 * 280.15798 * 27 26 25 49 49 H 1.08002 * 119.99599 * 179.73069 * 28 15 14 50 50 H 1.08000 * 120.00213 * 180.29600 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8198 0.0001 12 6 1.8171 -6.1248 0.0007 13 6 2.1629 -6.7229 1.1982 14 6 2.8535 -7.9203 1.1987 15 6 3.1990 -8.5195 0.0019 16 6 3.9524 -9.8247 0.0026 17 7 3.0005 -10.9381 0.0033 18 6 3.4497 -12.2088 0.0035 19 8 4.6422 -12.4303 0.0035 20 6 2.4705 -13.3542 0.0037 21 1 1.5465 -13.1834 -0.5486 22 6 2.3928 -14.2195 1.2664 23 6 3.0376 -14.7620 0.0045 24 6 2.4113 -15.9017 -0.8145 25 6 3.5221 -16.9725 -0.8648 26 8 4.6248 -16.4824 -0.0818 27 6 4.5482 -15.0384 -0.0910 28 6 2.8583 -7.9186 -1.1955 29 6 2.1627 -6.7241 -1.1961 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6846 -3.7145 0.8896 33 1 2.6847 -3.7146 -0.8904 34 1 0.4368 -4.7621 -0.8896 35 1 0.4374 -4.7618 0.8902 36 1 1.8933 -6.2544 2.1333 37 1 3.1232 -8.3876 2.1343 38 1 4.5792 -9.8818 0.8925 39 1 4.5790 -9.8828 -0.8875 40 1 2.0468 -10.7609 0.0030 41 1 1.4172 -14.6178 1.5449 42 1 3.0504 -13.9602 2.0961 43 1 2.1635 -15.5597 -1.8193 44 1 1.5250 -16.2928 -0.3149 45 1 3.8401 -17.1284 -1.8957 46 1 3.1547 -17.9079 -0.4428 47 1 5.0704 -14.6204 0.7696 48 1 4.9541 -14.6380 -1.0199 49 1 3.1321 -8.3846 -2.1306 50 1 1.8923 -6.2570 -2.1317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713385652.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:51 Heat of formation + Delta-G solvation = -48.449896 kcal Electronic energy + Delta-G solvation = -27975.929454 eV Core-core repulsion = 23967.719118 eV Total energy + Delta-G solvation = -4008.210336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.61769 -40.59637 -39.76915 -37.29653 -36.80213 -35.97315 -34.29620 -32.57174 -31.85075 -31.39575 -30.04336 -28.47405 -27.21533 -25.57107 -24.40837 -23.64607 -23.52988 -23.07808 -21.61128 -21.50410 -20.50584 -19.23353 -18.35812 -17.49494 -17.08019 -16.89563 -16.84044 -16.58739 -16.38959 -16.11736 -15.99213 -15.69024 -15.42149 -15.23616 -15.06194 -14.96876 -14.37648 -14.26939 -14.07393 -13.74456 -13.59419 -13.51011 -13.36906 -13.07384 -12.95777 -12.90139 -12.51558 -12.42907 -12.37861 -12.11371 -12.02975 -12.01713 -11.81180 -11.69439 -11.50394 -11.05418 -10.97328 -10.85880 -10.59218 -10.13937 -9.82808 -9.55765 -9.03880 -7.97969 -5.27573 0.25278 0.49797 1.42270 1.46836 1.47447 1.57859 2.09440 2.54086 2.65092 2.86307 3.09520 3.31561 3.35902 3.61557 3.67209 3.75434 3.82033 3.87158 3.88248 4.02177 4.13865 4.17594 4.21383 4.37117 4.44052 4.44997 4.48690 4.52697 4.56081 4.67978 4.68930 4.74145 4.77869 4.80172 4.83790 4.90790 4.93667 5.06173 5.08077 5.10027 5.10371 5.24594 5.26199 5.35744 5.45090 5.49311 5.61092 5.77859 5.89693 6.06206 6.24740 6.51678 7.19803 7.30951 8.05163 8.29666 9.25673 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.042557 B = 0.001339 C = 0.001328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.784484 B =20913.048555 C =21085.989145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.161 3.839 11 C -0.079 4.079 12 C -0.071 4.071 13 C -0.126 4.126 14 C -0.095 4.095 15 C -0.115 4.115 16 C 0.171 3.829 17 N -0.708 5.708 18 C 0.537 3.463 19 O -0.577 6.577 20 C -0.166 4.166 21 H 0.157 0.843 22 C -0.117 4.117 23 C -0.145 4.145 24 C -0.112 4.112 25 C 0.039 3.961 26 O -0.408 6.408 27 C 0.097 3.903 28 C -0.096 4.096 29 C -0.126 4.126 30 H 0.252 0.748 31 H 0.375 0.625 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.127 0.873 37 H 0.139 0.861 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.415 0.585 41 H 0.137 0.863 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.055 0.945 49 H 0.139 0.861 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 -35.711 -0.619 35.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.803 3.197 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.381 4.381 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.035 3.965 11 C -0.117 4.117 12 C -0.072 4.072 13 C -0.144 4.144 14 C -0.114 4.114 15 C -0.115 4.115 16 C 0.048 3.952 17 N -0.360 5.360 18 C 0.324 3.676 19 O -0.457 6.457 20 C -0.187 4.187 21 H 0.174 0.826 22 C -0.155 4.155 23 C -0.146 4.146 24 C -0.149 4.149 25 C -0.038 4.038 26 O -0.328 6.328 27 C 0.021 3.979 28 C -0.114 4.114 29 C -0.144 4.144 30 H 0.061 0.939 31 H 0.207 0.793 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.145 0.855 37 H 0.157 0.843 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.251 0.749 41 H 0.155 0.845 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.122 0.878 45 H 0.081 0.919 46 H 0.116 0.884 47 H 0.099 0.901 48 H 0.073 0.927 49 H 0.157 0.843 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.013 -35.891 -0.525 36.021 hybrid contribution -0.424 1.745 -0.185 1.805 sum 2.589 -34.146 -0.710 34.252 Atomic orbital electron populations 1.69818 1.06595 1.26144 1.59324 1.25578 0.96443 1.01109 1.03413 0.85064 0.78179 0.79626 0.76832 1.19159 1.21802 1.21790 1.19670 0.91496 0.85421 1.41562 0.90844 1.42592 1.05717 1.01200 1.89502 1.20703 0.93823 0.84507 0.97469 1.20635 0.97189 0.90829 1.03044 1.19905 0.97865 0.95229 0.94159 1.21219 0.99313 0.96088 0.97739 1.21194 0.97089 0.94826 0.98277 1.19771 1.01423 0.96829 0.93489 1.20049 0.90564 0.81826 1.02800 1.45936 1.11182 1.04467 1.74398 1.20105 0.88573 0.83947 0.74956 1.90705 1.18398 1.85110 1.51455 1.22185 1.01322 0.88833 1.06359 0.82568 1.23041 1.03705 0.98841 0.89870 1.22089 0.95903 0.93964 1.02615 1.22394 0.98895 0.92734 1.00918 1.23402 0.86087 0.98276 0.95999 1.88901 1.49924 1.20736 1.73269 1.22728 0.93792 0.79766 1.01601 1.21198 0.97085 0.94864 0.98266 1.21219 0.99280 0.96117 0.97742 0.93866 0.79288 0.96508 0.96495 0.90931 0.90940 0.85517 0.84285 0.90972 0.90958 0.74865 0.84542 0.88816 0.88931 0.87848 0.91866 0.88374 0.90075 0.92676 0.84279 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.28 13.06 21.65 0.28 -59.00 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 3 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.25 -14.19 9.99 84.03 0.84 -13.35 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.75 -38.57 5.60 -343.44 -1.92 -40.50 16 10 C 0.16 6.54 6.24 86.38 0.54 7.08 16 11 C -0.08 -2.50 5.46 29.85 0.16 -2.33 16 12 C -0.07 -1.82 5.13 -19.87 -0.10 -1.92 16 13 C -0.13 -2.85 9.70 22.27 0.22 -2.63 16 14 C -0.10 -1.74 9.70 22.27 0.22 -1.53 16 15 C -0.11 -1.94 5.25 -19.87 -0.10 -2.05 16 16 C 0.17 2.64 5.80 85.63 0.50 3.13 16 17 N -0.71 -8.96 5.55 -466.80 -2.59 -11.55 16 18 C 0.54 8.51 7.61 87.66 0.67 9.18 16 19 O -0.58 -13.73 13.96 -3.05 -0.04 -13.78 16 20 C -0.17 -1.61 6.10 -11.86 -0.07 -1.68 16 21 H 0.16 0.63 8.14 -2.39 -0.02 0.61 16 22 C -0.12 -1.02 10.04 30.27 0.30 -0.72 16 23 C -0.14 -1.74 2.39 -52.48 -0.13 -1.87 16 24 C -0.11 -0.86 6.85 31.29 0.21 -0.64 16 25 C 0.04 0.44 7.72 72.45 0.56 1.00 16 26 O -0.41 -8.15 11.52 -148.98 -1.72 -9.86 16 27 C 0.10 1.84 5.66 72.27 0.41 2.25 16 28 C -0.10 -1.74 9.70 22.27 0.22 -1.53 16 29 C -0.13 -2.84 9.70 22.27 0.22 -2.63 16 30 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 31 H 0.38 20.31 7.67 -92.71 -0.71 19.59 16 32 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 2.27 8.09 -2.39 -0.02 2.25 16 35 H 0.07 2.27 8.08 -2.39 -0.02 2.25 16 36 H 0.13 2.77 8.06 -2.91 -0.02 2.74 16 37 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.07 1.20 8.08 -2.39 -0.02 1.18 16 39 H 0.07 1.21 8.08 -2.38 -0.02 1.19 16 40 H 0.41 3.50 8.46 -92.71 -0.78 2.71 16 41 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.08 1.78 7.52 -2.38 -0.02 1.76 16 48 H 0.06 1.18 7.82 -2.39 -0.02 1.16 16 49 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 50 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -72.91 414.57 0.61 -72.31 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: -0.55 Total: 28.12 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 5.12 Total: -13.99 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -4.23 Total: -111.04 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -1.76 Total: -23.64 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -72.91 0.61 -72.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713385652.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.857 kcal (2) G-P(sol) polarization free energy of solvation -72.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds