Wall clock time and date at job start Wed Apr 1 2020 03:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99975 * 2 1 4 4 H 1.48498 * 109.47038 * 269.99699 * 3 2 1 5 5 H 1.48498 * 109.47377 * 30.00042 * 3 2 1 6 6 H 1.48502 * 109.47093 * 150.00310 * 3 2 1 7 7 C 1.38815 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99718 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99885 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47314 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47551 * 180.02562 * 11 10 9 13 13 C 1.38240 * 119.99597 * 89.99969 * 12 11 10 14 14 C 1.38234 * 119.99291 * 179.97438 * 13 12 11 15 15 C 1.38236 * 120.00644 * 359.97438 * 14 13 12 16 16 C 1.50690 * 120.00325 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47072 * 89.99715 * 16 15 14 18 18 C 1.34773 * 119.99968 * 179.97438 * 17 16 15 19 19 O 1.21283 * 120.00360 * 359.73034 * 18 17 16 20 20 C 1.50706 * 120.00081 * 180.02562 * 18 17 16 21 21 H 1.09004 * 115.55876 * 325.30803 * 20 18 17 22 22 C 1.53182 * 117.52182 * 111.08331 * 20 18 17 23 23 C 1.52104 * 117.52465 * 179.53335 * 20 18 17 24 24 C 1.53712 * 121.73568 * 3.68192 * 23 20 18 25 25 C 1.54697 * 103.69530 * 143.46623 * 24 23 20 26 26 O 1.44495 * 104.87146 * 23.84277 * 25 24 23 27 27 C 1.44638 * 105.46257 * 320.02524 * 26 25 24 28 28 C 1.38239 * 119.99556 * 0.27085 * 15 14 13 29 29 C 1.38231 * 119.99974 * 269.97994 * 12 11 10 30 30 H 0.96996 * 120.00058 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00057 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.46761 * 60.00535 * 10 9 7 33 33 H 1.08995 * 109.47587 * 300.00696 * 10 9 7 34 34 H 1.08998 * 109.47222 * 60.00074 * 11 10 9 35 35 H 1.09003 * 109.46904 * 300.00372 * 11 10 9 36 36 H 1.07996 * 120.00243 * 359.97438 * 13 12 11 37 37 H 1.08009 * 119.99626 * 179.97438 * 14 13 12 38 38 H 1.09004 * 109.47343 * 330.00265 * 16 15 14 39 39 H 1.08998 * 109.47656 * 210.00123 * 16 15 14 40 40 H 0.96998 * 119.99507 * 0.02562 * 17 16 15 41 41 H 1.09000 * 117.52131 * 214.84951 * 22 20 18 42 42 H 1.08998 * 117.52477 * 359.95204 * 22 20 18 43 43 H 1.09004 * 110.57790 * 262.01784 * 24 23 20 44 44 H 1.09003 * 110.58646 * 24.75860 * 24 23 20 45 45 H 1.09003 * 110.36096 * 142.68902 * 25 24 23 46 46 H 1.09002 * 110.35404 * 264.99235 * 25 24 23 47 47 H 1.09008 * 110.41725 * 280.87936 * 27 26 25 48 48 H 1.08996 * 110.42198 * 158.41977 * 27 26 25 49 49 H 1.07997 * 119.99934 * 179.72501 * 28 15 14 50 50 H 1.08001 * 119.99827 * 359.97438 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8198 -0.0021 12 6 1.8173 -6.1249 -0.0026 13 6 2.1629 -6.7239 1.1944 14 6 2.8536 -7.9213 1.1938 15 6 3.1982 -8.5200 -0.0035 16 6 3.9516 -9.8251 -0.0040 17 7 2.9995 -10.9386 -0.0031 18 6 3.4487 -12.2092 -0.0039 19 8 4.6411 -12.4310 -0.0103 20 6 2.4694 -13.3547 -0.0035 21 1 1.5497 -13.1869 0.5570 22 6 2.3798 -14.2099 -1.2713 23 6 3.0378 -14.7655 -0.0154 24 6 4.5506 -15.0283 0.0565 25 6 4.6595 -16.3068 0.9206 26 8 3.3806 -16.9633 0.7746 27 6 2.3978 -15.9023 0.7969 28 6 2.8570 -7.9184 -1.2004 29 6 2.1624 -6.7232 -1.2000 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6853 -3.7149 0.8879 33 1 2.6841 -3.7142 -0.8920 34 1 0.4369 -4.7615 -0.8918 35 1 0.4375 -4.7626 0.8882 36 1 1.8933 -6.2563 2.1299 37 1 3.1240 -8.3891 2.1290 38 1 4.5790 -9.8828 0.8855 39 1 4.5776 -9.8830 -0.8945 40 1 2.0459 -10.7612 -0.0027 41 1 1.4014 -14.6052 -1.5441 42 1 3.0287 -13.9433 -2.1056 43 1 4.9568 -15.2035 -0.9398 44 1 5.0622 -14.1940 0.5363 45 1 5.4594 -16.9480 0.5501 46 1 4.8346 -16.0452 1.9642 47 1 2.2104 -15.5791 1.8210 48 1 1.4718 -16.2317 0.3257 49 1 3.1301 -8.3839 -2.1359 50 1 1.8918 -6.2555 -2.1351 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713385653.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:56 Heat of formation + Delta-G solvation = -24.263074 kcal Electronic energy + Delta-G solvation = -27990.612791 eV Core-core repulsion = 23983.451275 eV Total energy + Delta-G solvation = -4007.161516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.02677 -39.77397 -39.04882 -36.41269 -35.73643 -34.79405 -32.85634 -31.04122 -30.99077 -30.61722 -28.81919 -27.83823 -26.04924 -24.24861 -23.26027 -23.12860 -22.78238 -21.62074 -20.97228 -20.54690 -19.92967 -17.63158 -17.20305 -16.85266 -16.51061 -16.04264 -15.97058 -15.65220 -15.52459 -15.19054 -15.03312 -14.66374 -14.33651 -14.08315 -13.67086 -13.58087 -13.42804 -13.30606 -13.23900 -12.98611 -12.75223 -12.66484 -12.57562 -12.37773 -11.83786 -11.42385 -11.26815 -11.21754 -11.11793 -10.98077 -10.91177 -10.72169 -10.62995 -10.56669 -10.20401 -10.09356 -9.87336 -9.73825 -9.45673 -8.98154 -8.88331 -8.60658 -6.95073 -5.78680 -3.07721 1.13823 1.36033 2.05051 2.75879 3.15855 3.42495 3.47584 3.49353 3.53386 3.71368 3.96142 4.12243 4.21355 4.39723 4.46383 4.57219 4.60035 4.70611 4.76621 4.92842 4.93950 4.97026 4.99999 5.07994 5.11910 5.14879 5.26704 5.34979 5.38788 5.41996 5.45974 5.50099 5.57497 5.63962 5.72825 5.80857 5.82140 5.87575 6.03838 6.08907 6.16678 6.24628 6.34776 6.41249 6.44367 6.57522 6.78362 6.89769 6.95110 7.11006 7.68387 7.83369 8.40201 9.51346 10.08402 10.43340 11.44244 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.041338 B = 0.001343 C = 0.001332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.187166 B =20845.819637 C =21018.314207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.161 3.839 11 C -0.095 4.095 12 C -0.051 4.051 13 C -0.118 4.118 14 C -0.098 4.098 15 C -0.128 4.128 16 C 0.166 3.834 17 N -0.719 5.719 18 C 0.543 3.457 19 O -0.536 6.536 20 C -0.177 4.177 21 H 0.127 0.873 22 C -0.131 4.131 23 C -0.129 4.129 24 C -0.129 4.129 25 C 0.043 3.957 26 O -0.375 6.375 27 C 0.082 3.918 28 C -0.098 4.098 29 C -0.118 4.118 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.404 0.596 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.116 0.884 45 H 0.091 0.909 46 H 0.060 0.940 47 H 0.067 0.933 48 H 0.094 0.906 49 H 0.120 0.880 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.942 -33.340 0.160 33.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.132 4.132 12 C -0.052 4.052 13 C -0.136 4.136 14 C -0.117 4.117 15 C -0.129 4.129 16 C 0.043 3.957 17 N -0.370 5.370 18 C 0.330 3.670 19 O -0.413 6.413 20 C -0.198 4.198 21 H 0.145 0.855 22 C -0.168 4.168 23 C -0.130 4.130 24 C -0.166 4.166 25 C -0.033 4.033 26 O -0.294 6.294 27 C 0.005 3.995 28 C -0.117 4.117 29 C -0.136 4.136 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.238 0.762 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.094 0.906 44 H 0.134 0.866 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.113 0.887 49 H 0.138 0.862 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.926 -33.591 0.150 33.951 hybrid contribution -0.368 1.499 0.025 1.544 sum 4.558 -32.092 0.175 32.415 Atomic orbital electron populations 1.69659 1.05126 1.25685 1.57792 1.24746 0.95543 0.97718 1.02965 0.86175 0.78662 0.83732 0.77553 1.21678 1.21716 1.20737 1.19241 0.91076 0.84133 1.42719 0.91165 1.42368 1.05882 0.99988 1.89609 1.20584 0.93110 0.84914 0.98055 1.20879 0.98125 0.91046 1.03200 1.20095 0.96317 0.95821 0.92937 1.21129 0.98975 0.95376 0.98133 1.21009 0.97955 0.95571 0.97166 1.19687 1.02546 0.96840 0.93815 1.20166 0.90546 0.81988 1.02986 1.46112 1.10784 1.05111 1.75023 1.19648 0.88613 0.83135 0.75634 1.90610 1.16739 1.84064 1.49921 1.22165 1.01249 0.90896 1.05470 0.85486 1.23004 1.02876 1.00155 0.90748 1.22179 0.96967 0.92770 1.01044 1.22725 0.93003 0.99069 1.01789 1.23541 0.86597 0.93821 0.99353 1.89162 1.16133 1.29450 1.94610 1.22802 0.92386 0.85598 0.98696 1.21009 0.97918 0.95567 0.97173 1.21129 0.98942 0.95413 0.98129 0.93497 0.78279 0.96245 0.96260 0.90759 0.90767 0.85682 0.86198 0.90668 0.90678 0.76195 0.87246 0.87802 0.90627 0.86646 0.89052 0.92206 0.91523 0.88739 0.86195 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.73 -18.69 5.60 -59.91 -0.34 -19.03 16 10 C 0.16 3.24 6.24 -4.04 -0.03 3.21 16 11 C -0.09 -1.49 5.46 -27.88 -0.15 -1.64 16 12 C -0.05 -0.67 5.13 -104.62 -0.54 -1.21 16 13 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 14 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 15 C -0.13 -1.22 5.25 -104.63 -0.55 -1.77 16 16 C 0.17 1.41 5.80 -5.20 -0.03 1.38 16 17 N -0.72 -5.27 5.55 -61.47 -0.34 -5.61 16 18 C 0.54 4.63 7.61 -10.98 -0.08 4.54 16 19 O -0.54 -6.22 13.34 5.56 0.07 -6.14 16 20 C -0.18 -1.07 6.08 -92.13 -0.56 -1.63 16 21 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 22 C -0.13 -0.72 10.01 -27.01 -0.27 -0.99 16 23 C -0.13 -0.88 2.51 -154.61 -0.39 -1.26 16 24 C -0.13 -1.03 5.98 -25.47 -0.15 -1.18 16 25 C 0.04 0.32 7.65 38.05 0.29 0.61 16 26 O -0.37 -3.34 11.65 -35.23 -0.41 -3.75 16 27 C 0.08 0.53 7.44 37.51 0.28 0.81 16 28 C -0.10 -0.99 9.70 -39.58 -0.38 -1.38 16 29 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.38 10.15 7.67 -40.82 -0.31 9.84 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 35 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 36 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.08 0.67 8.09 -51.93 -0.42 0.26 16 39 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.40 2.29 8.46 -40.82 -0.35 1.94 16 41 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.12 1.12 5.44 -51.93 -0.28 0.84 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 48 H 0.09 0.45 8.12 -51.93 -0.42 0.03 16 49 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 50 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 413.22 15.07 6.23 6.23 Total: -1.00 -33.19 413.22 -11.13 -44.31 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -8.08 Total: 7.02 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -3.96 Total: -12.92 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.05 Total: -52.13 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.34 Total: -9.90 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.19 -11.13 -44.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713385653.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.051 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds